>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2|
          Length = 112

 Score =  165 bits (418), Expect = 9e-41
 Identities = 83/102 (81%), Positives = 91/102 (89%)
 Frame = -3

Query: 597 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRI 418
           M   Q K+GLFVG+NKGHVVT+REL PRP  RKGK +KR +F+RNLI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 417 TELLKVDKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 292
           TELLKV KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 102

>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3|
          Length = 108

 Score =  164 bits (415), Expect = 2e-40
 Identities = 81/95 (85%), Positives = 90/95 (94%)
 Frame = -3

Query: 576 SGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVD 397
           +GLFVG+NKGHVVTKRE PPRP++RKGK +KR +F+RNLI+EVAG APYEKRITELLKV 
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 396 KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 292
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 98

>RL36A_ARATH (O80929) 60S ribosomal protein L36-1|
          Length = 113

 Score =  164 bits (414), Expect = 3e-40
 Identities = 81/96 (84%), Positives = 89/96 (92%)
 Frame = -3

Query: 579 KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 400
           K+GLFVG+NKGHVVT+REL PRP+ RKGK +KR +F+R LIREVAG APYEKRITELLKV
Sbjct: 7   KTGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKV 66

Query: 399 DKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 292
            KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS
Sbjct: 67  GKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 102

>RL36_DAUCA (P52866) 60S ribosomal protein L36|
          Length = 106

 Score =  135 bits (340), Expect(2) = 1e-34
 Identities = 67/91 (73%), Positives = 76/91 (83%)
 Frame = -3

Query: 597 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRI 418
           MAP QP +GLFVG+NKGH+VTK+EL PRPSDRKGK +KR  FVRNLIREVAGF PYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 417 TELLKVDKDKRALKVAKRKLGTHKRAKKKRE 325
           TELLKV KDKRALKV + K+G H +  K+ E
Sbjct: 61  TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90



 Score = 31.2 bits (69), Expect(2) = 1e-34
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 328 RGDVKCPQEDEVWWW 284
           RGDV+C   DE WWW
Sbjct: 91  RGDVQCSPPDEGWWW 105

>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36|
          Length = 101

 Score =  123 bits (308), Expect = 5e-28
 Identities = 62/91 (68%), Positives = 75/91 (82%)
 Frame = -3

Query: 564 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVDKDKR 385
           VG+NKGH VTK+   PRPS RKG  ++RV  VR ++REVAG+APYE+R+ ELLKV KDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 384 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 292
           ALK+ KRKLGTH R KKKREEM+ VLRKM++
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQA 96

>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A|
          Length = 99

 Score =  118 bits (295), Expect = 2e-26
 Identities = 57/93 (61%), Positives = 77/93 (82%)
 Frame = -3

Query: 573 GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVDK 394
           GL VG+NKG V+TKR+LP RPS RKG+ +KR  FVR+++REVAGFAPYE+R+ EL++  +
Sbjct: 4   GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQ 63

Query: 393 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
           DKRA K+AK++LGT KRAK K EE++SV++  R
Sbjct: 64  DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96

>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36|
          Length = 104

 Score =  116 bits (290), Expect = 7e-26
 Identities = 58/90 (64%), Positives = 70/90 (77%)
 Frame = -3

Query: 564 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVDKDKR 385
           VG+NKGH VTK    PR S R+G+ TK   FVR++IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 384 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
           ALK  K+++GTH RAK+KREE+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36|
          Length = 104

 Score =  116 bits (290), Expect = 7e-26
 Identities = 58/90 (64%), Positives = 70/90 (77%)
 Frame = -3

Query: 564 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVDKDKR 385
           VG+NKGH VTK    PR S R+G+ TK   FVR++IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 384 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
           ALK  K+++GTH RAK+KREE+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B|
          Length = 99

 Score =  116 bits (290), Expect = 7e-26
 Identities = 56/93 (60%), Positives = 75/93 (80%)
 Frame = -3

Query: 573 GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVDK 394
           GL VG+NKG  +TKR+LP RPS RKG  +KR  FVR+++REVAGFAPYE+R+ EL++  +
Sbjct: 4   GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQ 63

Query: 393 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
           DKRA K+AK++LGT KRAK K EE++SV++  R
Sbjct: 64  DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96

>RL36_BOVIN (Q3T171) 60S ribosomal protein L36|
          Length = 104

 Score =  115 bits (288), Expect = 1e-25
 Identities = 58/90 (64%), Positives = 70/90 (77%)
 Frame = -3

Query: 564 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVDKDKR 385
           VG+NKGH VTK    PR S R+G+ TK   FVR++IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 384 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
           ALK  K+++GTH RAK+KREE+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36_RAT (P39032) 60S ribosomal protein L36|
          Length = 104

 Score =  114 bits (284), Expect = 3e-25
 Identities = 57/90 (63%), Positives = 69/90 (76%)
 Frame = -3

Query: 564 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVDKDKR 385
           VG+NKGH VTK    PR S R+G+ TK   FVR++IREV  FAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKR 67

Query: 384 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
           ALK  K+++GTH RAK+KREE+S+VL  MR
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97

>RL36_MOUSE (P47964) 60S ribosomal protein L36|
          Length = 104

 Score =  107 bits (268), Expect = 2e-23
 Identities = 54/89 (60%), Positives = 66/89 (74%)
 Frame = -3

Query: 564 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVDKDKR 385
           VG+NKGH VTK    PR S R+ + T    FVR++IREV GFAPYE+R  ELLKV K KR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKR 67

Query: 384 ALKVAKRKLGTHKRAKKKREEMSSVLRKM 298
           ALK  K+++GTH RAK+KREE+S+VL  M
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAM 96

>RL36_CAEEL (P49181) 60S ribosomal protein L36|
          Length = 103

 Score =  105 bits (263), Expect = 9e-23
 Identities = 48/93 (51%), Positives = 67/93 (72%)
 Frame = -3

Query: 573 GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVDK 394
           GL VG+NKGH  T+  +  R +  KG  +K+   VR L+RE+ GFAPYE+R+ E+L++ K
Sbjct: 7   GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISK 66

Query: 393 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
           DKRALK  KR++GTH+RAK KREE+ +V+   R
Sbjct: 67  DKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 99

>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)|
          Length = 105

 Score =  104 bits (259), Expect = 3e-22
 Identities = 54/102 (52%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
 Frame = -3

Query: 597 MAPSQP-KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKR 421
           MA   P K+GL VG+NKGH  T R + PR S  KG  +KR  FVR +++EVAG APYE+R
Sbjct: 1   MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERR 60

Query: 420 ITELLKVDKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
           + ELL+  KDKRA K+AK++LGT  RAK+K +E+  V+ + R
Sbjct: 61  VIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESR 102

>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)|
          Length = 99

 Score =  103 bits (257), Expect = 4e-22
 Identities = 48/95 (50%), Positives = 72/95 (75%)
 Frame = -3

Query: 579 KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 400
           KSG+  G+NKG   T +E+ P+ S RKG  ++R +FVR++++EVAG APYE+R+ EL++ 
Sbjct: 3   KSGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRN 62

Query: 399 DKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
             +KRA K+AK++LGTHKRA +K EEM+ V+ + R
Sbjct: 63  AGEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97

>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)|
          Length = 115

 Score =  100 bits (248), Expect = 5e-21
 Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 10/102 (9%)
 Frame = -3

Query: 570 LFVGINKGHVVTKRELPPRPSDRKGKG----------TKRVLFVRNLIREVAGFAPYEKR 421
           L +G+NKGH  +K        D+K KG          T+   F+R+L+REV G APYEKR
Sbjct: 7   LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKR 66

Query: 420 ITELLKVDKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
             ELLKV KDKRALK  KR+LGTH RAK+KREE+S++L ++R
Sbjct: 67  TMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108

>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)|
          Length = 99

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 43/95 (45%), Positives = 68/95 (71%)
 Frame = -3

Query: 579 KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 400
           K+G+ +G+NKG  VT+    P+ S +KG  + R  FVR+L+RE+AG +PYE+R+ +L++ 
Sbjct: 3   KTGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRN 62

Query: 399 DKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
             +KRA KVAK++LG+  RAK K EEM++++   R
Sbjct: 63  SGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97

>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)|
          Length = 99

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 43/95 (45%), Positives = 67/95 (70%)
 Frame = -3

Query: 579 KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 400
           K+G+ +G+NKG  VT     P+ S +KG  + R  FVR+L+RE+AG +PYE+R+ +L++ 
Sbjct: 3   KTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRN 62

Query: 399 DKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 295
             +KRA KVAK++LG+  RAK K EEM++++   R
Sbjct: 63  SGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97

>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6|
          Length = 249

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 438 APYEKRITELLKVDKDKRALKVAKRKLGTHKRAKKKREEMS 316
           A Y K + + LK  K+KR  K+AKR+  +  RA + + E S
Sbjct: 207 AEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLRASQSKSESS 247

>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2|
          Length = 959

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
 Frame = -3

Query: 630 ASILKVSXRPAMAPSQPKSGLFVGINKGHVVTKRELP----------PRPSDRKGKGTKR 481
           A +   + +   APS P       + K HV  +R +           PRP+DR G     
Sbjct: 98  APVKAPATKAPAAPSAP-------VTKPHVAQQRPVHQRPGGQQAQRPRPADRSG----- 145

Query: 480 VLFVRNLIREVAGFAPYEKRITELLKVDKDKRALKVAKRKLGTHKRAKKKREE 322
            + +  L R             ++ +V++  RA++ AKR+     R  K+REE
Sbjct: 146 -MVLNTLSRSEMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREE 197

>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2|
          Length = 959

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
 Frame = -3

Query: 630 ASILKVSXRPAMAPSQPKSGLFVGINKGHVVTKRELP----------PRPSDRKGKGTKR 481
           A +   + +   APS P       + K HV  +R +           PRP+DR G     
Sbjct: 98  APVKAPATKAPAAPSAP-------VTKPHVAQQRPVHQRPGGQQAQRPRPADRSG----- 145

Query: 480 VLFVRNLIREVAGFAPYEKRITELLKVDKDKRALKVAKRKLGTHKRAKKKREE 322
            + +  L R             ++ +V++  RA++ AKR+     R  K+REE
Sbjct: 146 -MVLNTLSRSEMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREE 197

>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2|
          Length = 959

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
 Frame = -3

Query: 630 ASILKVSXRPAMAPSQPKSGLFVGINKGHVVTKRELP----------PRPSDRKGKGTKR 481
           A +   + +   APS P       + K HV  +R +           PRP+DR G     
Sbjct: 98  APVKAPATKAPAAPSAP-------VTKPHVAQQRPVHQRPGGQQAQRPRPADRSG----- 145

Query: 480 VLFVRNLIREVAGFAPYEKRITELLKVDKDKRALKVAKRKLGTHKRAKKKREE 322
            + +  L R             ++ +V++  RA++ AKR+     R  K+REE
Sbjct: 146 -MVLNTLSRSEMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEREE 197


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,738,984
Number of Sequences: 219361
Number of extensions: 1506350
Number of successful extensions: 4372
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4363
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)