ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28j04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC112249.4| Homo sapiens BAC clone RP11-688H10 from 4, comple... 42 0.82
2gb|DQ176278.1| Anochetus sp. BLF m2 voucher CASENT0053696-D01 cy... 42 0.82
3gb|DQ176258.1| Anochetus sp. BLF m2 voucher CASENT0053760-D01 cy... 42 0.82
4gb|DQ176256.1| Anochetus sp. BLF m2 voucher CASENT0053776-D01 cy... 42 0.82
5gb|DQ176248.1| Anochetus sp. BLF m1 voucher CASENT0053785-D01 cy... 42 0.82
6gb|DQ176221.1| Anochetus sp. BLF m1 voucher CASENT0053814-D01 cy... 42 0.82
7gb|DQ176193.1| Anochetus sp. BLF m2 voucher CASENT0053870-D01 cy... 42 0.82
8gb|DQ176184.1| Anochetus sp. BLF m1 voucher CASENT0053884-D01 cy... 42 0.82
9gb|DQ176183.1| Anochetus sp. BLF m2 voucher CASENT0053944-D01 cy... 42 0.82
10ref|XM_640234.1| Dictyostelium discoideum hypothetical protein (... 40 3.2
11ref|XM_635556.1| Dictyostelium discoideum hypothetical protein (... 40 3.2
12gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, co... 40 3.2
13emb|AL451081.5| Human DNA sequence from clone RP11-302I18 on chr... 40 3.2
14emb|AJ719696.1| Gallus gallus mRNA for hypothetical protein, clo... 40 3.2
15ref|NM_001006185.1| Gallus gallus DEAD (Asp-Glu-Ala-Asp) box pol... 40 3.2
16gb|AC092354.2| Homo sapiens chromosome 5 clone RP11-307L14, comp... 40 3.2
17gb|AC115604.2| Dictyostelium discoideum chromosome 2 map 4354771... 40 3.2
18emb|AL935324.8| Zebrafish DNA sequence from clone CH211-197B6 in... 40 3.2
19emb|CR855192.10| Zebrafish DNA sequence from clone DKEY-202P3 in... 40 3.2
20emb|AL935208.8| Zebrafish DNA sequence from clone CH211-241N17, ... 40 3.2
21emb|AL627125.8| Mouse DNA sequence from clone RP23-466N19 on chr... 40 3.2

>gb|AC112249.4| Homo sapiens BAC clone RP11-688H10 from 4, complete sequence
          Length = 146551

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 94   atgaaattaaagaaggggaaa 114
            |||||||||||||||||||||
Sbjct: 9860 atgaaattaaagaaggggaaa 9880



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>gb|DQ176278.1| Anochetus sp. BLF m2 voucher CASENT0053696-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 650

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 85  ttgataataatgaaattaaagaagg 109
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271



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>gb|DQ176258.1| Anochetus sp. BLF m2 voucher CASENT0053760-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 85  ttgataataatgaaattaaagaagg 109
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271



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>gb|DQ176256.1| Anochetus sp. BLF m2 voucher CASENT0053776-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 85  ttgataataatgaaattaaagaagg 109
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271



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>gb|DQ176248.1| Anochetus sp. BLF m1 voucher CASENT0053785-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 85  ttgataataatgaaattaaagaagg 109
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271



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>gb|DQ176221.1| Anochetus sp. BLF m1 voucher CASENT0053814-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 656

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 85  ttgataataatgaaattaaagaagg 109
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271



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>gb|DQ176193.1| Anochetus sp. BLF m2 voucher CASENT0053870-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 85  ttgataataatgaaattaaagaagg 109
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271



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>gb|DQ176184.1| Anochetus sp. BLF m1 voucher CASENT0053884-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 85  ttgataataatgaaattaaagaagg 109
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271



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>gb|DQ176183.1| Anochetus sp. BLF m2 voucher CASENT0053944-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 85  ttgataataatgaaattaaagaagg 109
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271



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>ref|XM_640234.1| Dictyostelium discoideum hypothetical protein (DDB0216958), partial
           mRNA
          Length = 4941

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 86  tgataataatgaaattaaagaagg 109
           ||||||||||||||||| ||||||
Sbjct: 450 tgataataatgaaattatagaagg 473



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>ref|XM_635556.1| Dictyostelium discoideum hypothetical protein (DDB0218304), partial
           mRNA
          Length = 2061

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  ataataatgaaattaaagaa 107
           ||||||||||||||||||||
Sbjct: 752 ataataatgaaattaaagaa 771



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>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence
          Length = 153145

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    ttgataataatgaaattaaa 104
             ||||||||||||||||||||
Sbjct: 21933 ttgataataatgaaattaaa 21952



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>emb|AL451081.5| Human DNA sequence from clone RP11-302I18 on chromosome 1 Contains a
             thyroid autoantigen 70kDa (Ku antigen) (G22P1) pseudogene,
             a ribosomal protein, large, P0 (RPLP0) pseudogene and a
             novel gene, complete sequence
          Length = 76193

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    aaattaaagaaggggaaaat 116
             ||||||||||||||||||||
Sbjct: 38508 aaattaaagaaggggaaaat 38527



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>emb|AJ719696.1| Gallus gallus mRNA for hypothetical protein, clone 5g4
          Length = 1896

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 99   attaaagaaggggaaaatta 118
            ||||||||||||||||||||
Sbjct: 1715 attaaagaaggggaaaatta 1734



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>ref|NM_001006185.1| Gallus gallus DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 (DDX55), mRNA
          Length = 1896

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 99   attaaagaaggggaaaatta 118
            ||||||||||||||||||||
Sbjct: 1715 attaaagaaggggaaaatta 1734



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>gb|AC092354.2| Homo sapiens chromosome 5 clone RP11-307L14, complete sequence
          Length = 123581

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 89    taataatgaaattaaagaaggggaaaat 116
             |||||||| |||| ||||||||||||||
Sbjct: 72119 taataatgtaattgaagaaggggaaaat 72092



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>gb|AC115604.2| Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4,
            complete sequence
          Length = 60220

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 86   tgataataatgaaattaaagaagg 109
            ||||||||||||||||| ||||||
Sbjct: 8222 tgataataatgaaattatagaagg 8245



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>emb|AL935324.8| Zebrafish DNA sequence from clone CH211-197B6 in linkage group 10,
              complete sequence
          Length = 197730

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     gaaattaaagaaggggaaaa 115
              ||||||||||||||||||||
Sbjct: 135260 gaaattaaagaaggggaaaa 135279



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>emb|CR855192.10| Zebrafish DNA sequence from clone DKEY-202P3 in linkage group 10,
             complete sequence
          Length = 85127

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gaaattaaagaaggggaaaa 115
             ||||||||||||||||||||
Sbjct: 75606 gaaattaaagaaggggaaaa 75625



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>emb|AL935208.8| Zebrafish DNA sequence from clone CH211-241N17, complete sequence
          Length = 151406

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    ataataatgaaattaaagaa 107
             ||||||||||||||||||||
Sbjct: 68179 ataataatgaaattaaagaa 68160



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>emb|AL627125.8| Mouse DNA sequence from clone RP23-466N19 on chromosome 4, complete
             sequence
          Length = 179068

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    ataataatgaaattaaagaa 107
             ||||||||||||||||||||
Sbjct: 65099 ataataatgaaattaaagaa 65080


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,805,672
Number of Sequences: 3902068
Number of extensions: 1805672
Number of successful extensions: 43727
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43702
Number of HSP's gapped (non-prelim): 25
length of query: 251
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 229
effective length of database: 17,147,199,772
effective search space: 3926708747788
effective search space used: 3926708747788
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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