ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28j03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC081897.1| Rattus norvegicus C-type lectin domain family 14,... 46 0.044
2ref|NM_001014077.1| Rattus norvegicus C-type lectin domain famil... 46 0.044
3emb|CR377220.10| Zebrafish DNA sequence from clone DKEY-279E10 i... 42 0.69
4dbj|AB016877.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 0.69
5gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
6gb|AC146075.3| Pan troglodytes BAC clone RP43-15H6 from 7, compl... 40 2.7
7gb|AC146252.3| Pan troglodytes BAC clone RP43-31D18 from 7, comp... 40 2.7
8gb|AC146386.3| Pan troglodytes BAC clone RP43-126O23 from 7, com... 40 2.7
9gb|AC080064.6| Homo sapiens BAC clone RP13-492P3 from 7, complet... 40 2.7
10gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Can... 40 2.7
11gb|AC159329.8| Mus musculus 10 BAC RP23-205H9 (Roswell Park Canc... 40 2.7
12dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7

>gb|BC081897.1| Rattus norvegicus C-type lectin domain family 14, member a, mRNA
            (cDNA clone MGC:93813 IMAGE:7110446), complete cds
          Length = 3165

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 57   aaatgaaaaaggaaatagctata 79
            |||||||||||||||||||||||
Sbjct: 1844 aaatgaaaaaggaaatagctata 1866



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>ref|NM_001014077.1| Rattus norvegicus C-type lectin domain family 14, member a (Clec14a),
            mRNA
          Length = 3165

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 57   aaatgaaaaaggaaatagctata 79
            |||||||||||||||||||||||
Sbjct: 1844 aaatgaaaaaggaaatagctata 1866



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>emb|CR377220.10| Zebrafish DNA sequence from clone DKEY-279E10 in linkage group 1,
              complete sequence
          Length = 169012

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      cacatgcatcatctcaaaaca 29
              |||||||||||||||||||||
Sbjct: 145578 cacatgcatcatctcaaaaca 145598



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>dbj|AB016877.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLF18
          Length = 74842

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   aagagaaaaagaagcaacatc 177
             |||||||||||||||||||||
Sbjct: 42714 aagagaaaaagaagcaacatc 42734



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>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0115F21, complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    tcatctcaaaacacaacaac 36
             ||||||||||||||||||||
Sbjct: 33604 tcatctcaaaacacaacaac 33623



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>gb|AC146075.3| Pan troglodytes BAC clone RP43-15H6 from 7, complete sequence
          Length = 174752

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 146    acttttacttgaagagaaaaagaa 169
              ||||||||||||| ||||||||||
Sbjct: 156557 acttttacttgaaaagaaaaagaa 156580



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>gb|AC146252.3| Pan troglodytes BAC clone RP43-31D18 from 7, complete sequence
          Length = 155242

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 146    acttttacttgaagagaaaaagaa 169
              ||||||||||||| ||||||||||
Sbjct: 129673 acttttacttgaaaagaaaaagaa 129650



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>gb|AC146386.3| Pan troglodytes BAC clone RP43-126O23 from 7, complete sequence
          Length = 160593

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 146   acttttacttgaagagaaaaagaa 169
             ||||||||||||| ||||||||||
Sbjct: 71698 acttttacttgaaaagaaaaagaa 71721



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>gb|AC080064.6| Homo sapiens BAC clone RP13-492P3 from 7, complete sequence
          Length = 82149

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 146   acttttacttgaagagaaaaagaa 169
             ||||||||||||| ||||||||||
Sbjct: 40615 acttttacttgaaaagaaaaagaa 40592



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>gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 156422

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    aaatgaaaaaggaaatagct 76
             ||||||||||||||||||||
Sbjct: 40388 aaatgaaaaaggaaatagct 40369



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>gb|AC159329.8| Mus musculus 10 BAC RP23-205H9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 213287

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     ctcaaaacacaacaactata 40
              ||||||||||||||||||||
Sbjct: 128923 ctcaaaacacaacaactata 128904



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 17      tcatctcaaaacacaacaac 36
               ||||||||||||||||||||
Sbjct: 6471126 tcatctcaaaacacaacaac 6471145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,663,732
Number of Sequences: 3902068
Number of extensions: 2663732
Number of successful extensions: 223151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 222942
Number of HSP's gapped (non-prelim): 209
length of query: 214
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 192
effective length of database: 17,147,199,772
effective search space: 3292262356224
effective search space used: 3292262356224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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