| Clone Name | rbags28j03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC081897.1| Rattus norvegicus C-type lectin domain family 14, member a, mRNA (cDNA clone MGC:93813 IMAGE:7110446), complete cds Length = 3165 Score = 46.1 bits (23), Expect = 0.044 Identities = 23/23 (100%) Strand = Plus / Plus Query: 57 aaatgaaaaaggaaatagctata 79 ||||||||||||||||||||||| Sbjct: 1844 aaatgaaaaaggaaatagctata 1866
>ref|NM_001014077.1| Rattus norvegicus C-type lectin domain family 14, member a (Clec14a), mRNA Length = 3165 Score = 46.1 bits (23), Expect = 0.044 Identities = 23/23 (100%) Strand = Plus / Plus Query: 57 aaatgaaaaaggaaatagctata 79 ||||||||||||||||||||||| Sbjct: 1844 aaatgaaaaaggaaatagctata 1866
>emb|CR377220.10| Zebrafish DNA sequence from clone DKEY-279E10 in linkage group 1, complete sequence Length = 169012 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 cacatgcatcatctcaaaaca 29 ||||||||||||||||||||| Sbjct: 145578 cacatgcatcatctcaaaaca 145598
>dbj|AB016877.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLF18 Length = 74842 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 aagagaaaaagaagcaacatc 177 ||||||||||||||||||||| Sbjct: 42714 aagagaaaaagaagcaacatc 42734
>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0115F21, complete sequence Length = 128493 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tcatctcaaaacacaacaac 36 |||||||||||||||||||| Sbjct: 33604 tcatctcaaaacacaacaac 33623
>gb|AC146075.3| Pan troglodytes BAC clone RP43-15H6 from 7, complete sequence Length = 174752 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 acttttacttgaagagaaaaagaa 169 ||||||||||||| |||||||||| Sbjct: 156557 acttttacttgaaaagaaaaagaa 156580
>gb|AC146252.3| Pan troglodytes BAC clone RP43-31D18 from 7, complete sequence Length = 155242 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 acttttacttgaagagaaaaagaa 169 ||||||||||||| |||||||||| Sbjct: 129673 acttttacttgaaaagaaaaagaa 129650
>gb|AC146386.3| Pan troglodytes BAC clone RP43-126O23 from 7, complete sequence Length = 160593 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 acttttacttgaagagaaaaagaa 169 ||||||||||||| |||||||||| Sbjct: 71698 acttttacttgaaaagaaaaagaa 71721
>gb|AC080064.6| Homo sapiens BAC clone RP13-492P3 from 7, complete sequence Length = 82149 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 acttttacttgaagagaaaaagaa 169 ||||||||||||| |||||||||| Sbjct: 40615 acttttacttgaaaagaaaaagaa 40592
>gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156422 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 aaatgaaaaaggaaatagct 76 |||||||||||||||||||| Sbjct: 40388 aaatgaaaaaggaaatagct 40369
>gb|AC159329.8| Mus musculus 10 BAC RP23-205H9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 213287 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 ctcaaaacacaacaactata 40 |||||||||||||||||||| Sbjct: 128923 ctcaaaacacaacaactata 128904
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tcatctcaaaacacaacaac 36 |||||||||||||||||||| Sbjct: 6471126 tcatctcaaaacacaacaac 6471145 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,663,732 Number of Sequences: 3902068 Number of extensions: 2663732 Number of successful extensions: 223151 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 222942 Number of HSP's gapped (non-prelim): 209 length of query: 214 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 192 effective length of database: 17,147,199,772 effective search space: 3292262356224 effective search space used: 3292262356224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)