| Clone Name | rbags28i15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_780232.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC580159 (LOC580159), mRNA Length = 1902 Score = 48.1 bits (24), Expect = 0.011 Identities = 24/24 (100%) Strand = Plus / Minus Query: 152 ctcgtcatcctcgtcatcgtcggc 175 |||||||||||||||||||||||| Sbjct: 1131 ctcgtcatcctcgtcatcgtcggc 1108 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tcatcctcgtcatcgtcggc 175 |||||||||||||||||||| Sbjct: 1187 tcatcctcgtcatcgtcggc 1168
>ref|XM_500389.1| Yarrowia lipolytica CLIB122, YALI0B01540g predicted mRNA Length = 210 Score = 46.1 bits (23), Expect = 0.044 Identities = 23/23 (100%) Strand = Plus / Minus Query: 151 actcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||||| Sbjct: 208 actcgtcatcctcgtcatcgtcg 186
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 46.1 bits (23), Expect = 0.044 Identities = 23/23 (100%) Strand = Plus / Plus Query: 151 actcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||||| Sbjct: 245151 actcgtcatcctcgtcatcgtcg 245173
>ref|XM_366233.1| Magnaporthe grisea 70-15 predicted protein (MG10452.4) partial mRNA Length = 738 Score = 44.1 bits (22), Expect = 0.17 Identities = 28/30 (93%) Strand = Plus / Minus Query: 156 tcatcctcgtcatcgtcggcggcaccagca 185 ||||| |||||||||||||||||| ||||| Sbjct: 452 tcatcgtcgtcatcgtcggcggcagcagca 423 Score = 44.1 bits (22), Expect = 0.17 Identities = 28/30 (93%) Strand = Plus / Minus Query: 156 tcatcctcgtcatcgtcggcggcaccagca 185 ||||| |||||||||||||||||| ||||| Sbjct: 383 tcatcgtcgtcatcgtcggcggcagcagca 354 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 tcgtcatcgtcggcggcaccagca 185 |||||||||||||||||| ||||| Sbjct: 653 tcgtcatcgtcggcggcagcagca 630
>ref|XM_363564.1| Magnaporthe grisea 70-15 hypothetical protein (MG01490.4) partial mRNA Length = 873 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 catcctcgtcatcgtcggcgg 177 ||||||||||||||||||||| Sbjct: 261 catcctcgtcatcgtcggcgg 281
>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila melanogaster library) complete sequence Length = 166613 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 tcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||| Sbjct: 150462 tcgtcatcctcgtcatcgtcg 150442
>emb|AJ296686.1|PAB296686 Picea abies ATC microsatellite DNA, clone EATC1A02 Length = 421 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 tcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||| Sbjct: 191 tcgtcatcctcgtcatcgtcg 211
>emb|AJ890137.1| Murid Herpesvirus 2 r138 gene (partial), r139 gene, r140 gene, r141 gene and r142 gene (partial) Length = 7462 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 tcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||| Sbjct: 3340 tcgtcatcctcgtcatcgtcg 3360
>gb|AC023723.4| Drosophila melanogaster X BAC RP98-48E6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179363 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 tcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||| Sbjct: 13719 tcgtcatcctcgtcatcgtcg 13699
>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163710 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 tcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||| Sbjct: 111766 tcgtcatcctcgtcatcgtcg 111746
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 tcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||| Sbjct: 190797 tcgtcatcctcgtcatcgtcg 190817
>ref|NM_132413.1| Drosophila melanogaster CG15295-RA (CG15295), mRNA Length = 2288 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 tcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||| Sbjct: 962 tcgtcatcctcgtcatcgtcg 942
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete sequence Length = 285729 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 tcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||| Sbjct: 130980 tcgtcatcctcgtcatcgtcg 131000
>gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence Length = 282600 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 tcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||| Sbjct: 115897 tcgtcatcctcgtcatcgtcg 115917
>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence Length = 339089 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 tcgtcatcctcgtcatcgtcg 173 ||||||||||||||||||||| Sbjct: 129620 tcgtcatcctcgtcatcgtcg 129640
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cctcgtcatcgtcggcggca 179 |||||||||||||||||||| Sbjct: 302688 cctcgtcatcgtcggcggca 302669
>ref|XM_754221.1| Ustilago maydis 521 hypothetical protein (UM03167.1) partial mRNA Length = 2610 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tcgtcatcctcgtcatcgtc 172 |||||||||||||||||||| Sbjct: 1748 tcgtcatcctcgtcatcgtc 1729
>ref|XM_754531.1| Ustilago maydis 521 hypothetical protein (UM03477.1) partial mRNA Length = 3900 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tcgtcatcctcgtcatcgtc 172 |||||||||||||||||||| Sbjct: 1019 tcgtcatcctcgtcatcgtc 1000
>ref|XM_380961.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00785.1) partial mRNA Length = 600 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tcgtcatcctcgtcatcgtc 172 |||||||||||||||||||| Sbjct: 593 tcgtcatcctcgtcatcgtc 574
>gb|AF315713.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase mRNA, partial cds Length = 1767 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tcctcgtcatcgtcggcggc 178 |||||||||||||||||||| Sbjct: 323 tcctcgtcatcgtcggcggc 304
>gb|AC161114.4| Mus musculus BAC clone RP24-338A5 from chromosome 12, complete sequence Length = 220746 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 gttgagggcgttgagcctct 210 |||||||||||||||||||| Sbjct: 125822 gttgagggcgttgagcctct 125841
>gb|AY043490.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase (hmg1) mRNA, complete cds Length = 1827 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tcctcgtcatcgtcggcggc 178 |||||||||||||||||||| Sbjct: 383 tcctcgtcatcgtcggcggc 364
>gb|AY039230.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase (hmgr) mRNA, complete cds Length = 2301 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tcctcgtcatcgtcggcggc 178 |||||||||||||||||||| Sbjct: 536 tcctcgtcatcgtcggcggc 517
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 151 actcgtcatcctcgtcatcgtcggcggc 178 ||||||| |||||||| ||||||||||| Sbjct: 24219624 actcgtcctcctcgtcgtcgtcggcggc 24219597
>gb|DQ022844.1| Oryza sativa (japonica cultivar-group) cytochrome P450 mRNA, complete cds Length = 1719 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 151 actcgtcatcctcgtcatcgtcggcggc 178 ||||||| |||||||| ||||||||||| Sbjct: 549 actcgtcctcctcgtcgtcgtcggcggc 576
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 ctcgtcatcctcgtcatcgtcggcggca 179 |||||| || |||||||||||||||||| Sbjct: 2243576 ctcgtcttcatcgtcatcgtcggcggca 2243603
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gagggcgttgagcctctcga 213 |||||||||||||||||||| Sbjct: 433386 gagggcgttgagcctctcga 433367
>gb|AE005004.1| Halobacterium sp. NRC-1 section 35 of 170 of the complete genome Length = 11030 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tcctcgtcatcgtcggcggc 178 |||||||||||||||||||| Sbjct: 5096 tcctcgtcatcgtcggcggc 5077
>dbj|AB125365.1| Corvus macrorhynchos DRD4 gene for dopamine receptor D4, exon 1, partial cds Length = 182 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 tcatcctcgtcatcgtcggcggca 179 |||||||| ||||||||||||||| Sbjct: 61 tcatcctcctcatcgtcggcggca 84
>dbj|AK121238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096A02, full insert sequence Length = 1698 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 151 actcgtcatcctcgtcatcgtcggcggc 178 ||||||| |||||||| ||||||||||| Sbjct: 543 actcgtcctcctcgtcgtcgtcggcggc 570
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 151 actcgtcatcctcgtcatcgtcggcggc 178 ||||||| |||||||| ||||||||||| Sbjct: 24147830 actcgtcctcctcgtcgtcgtcggcggc 24147803
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 151 actcgtcatcctcgtcatcgtcggcggc 178 ||||||| |||||||| ||||||||||| Sbjct: 104315 actcgtcctcctcgtcgtcgtcggcggc 104288 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,049,652 Number of Sequences: 3902068 Number of extensions: 1049652 Number of successful extensions: 74170 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73900 Number of HSP's gapped (non-prelim): 270 length of query: 215 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 193 effective length of database: 17,147,199,772 effective search space: 3309409555996 effective search space used: 3309409555996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)