ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28i15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_780232.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 48 0.011
2ref|XM_500389.1| Yarrowia lipolytica CLIB122, YALI0B01540g predi... 46 0.044
3emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 46 0.044
4ref|XM_366233.1| Magnaporthe grisea 70-15 predicted protein (MG1... 44 0.17
5ref|XM_363564.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 0.69
6gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI ... 42 0.69
7emb|AJ296686.1|PAB296686 Picea abies ATC microsatellite DNA, clo... 42 0.69
8emb|AJ890137.1| Murid Herpesvirus 2 r138 gene (partial), r139 ge... 42 0.69
9gb|AC023723.4| Drosophila melanogaster X BAC RP98-48E6 (Roswell ... 42 0.69
10gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell... 42 0.69
11gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 42 0.69
12ref|NM_132413.1| Drosophila melanogaster CG15295-RA (CG15295), mRNA 42 0.69
13gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 ... 42 0.69
14gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence 42 0.69
15gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence 42 0.69
16gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 2.7
17ref|XM_754221.1| Ustilago maydis 521 hypothetical protein (UM031... 40 2.7
18ref|XM_754531.1| Ustilago maydis 521 hypothetical protein (UM034... 40 2.7
19ref|XM_380961.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 2.7
20gb|AF315713.1| Malus x domestica 3-hydroxy-3-methylglutaryl coen... 40 2.7
21gb|AC161114.4| Mus musculus BAC clone RP24-338A5 from chromosome... 40 2.7
22gb|AY043490.1| Malus x domestica 3-hydroxy-3-methylglutaryl coen... 40 2.7
23gb|AY039230.1| Malus x domestica 3-hydroxy-3-methylglutaryl coen... 40 2.7
24dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
25gb|DQ022844.1| Oryza sativa (japonica cultivar-group) cytochrome... 40 2.7
26gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 2.7
27dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 2.7
28gb|AE005004.1| Halobacterium sp. NRC-1 section 35 of 170 of the ... 40 2.7
29dbj|AB125365.1| Corvus macrorhynchos DRD4 gene for dopamine rece... 40 2.7
30dbj|AK121238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
31gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
32emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310... 40 2.7

>ref|XM_780232.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC580159 (LOC580159), mRNA
          Length = 1902

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 152  ctcgtcatcctcgtcatcgtcggc 175
            ||||||||||||||||||||||||
Sbjct: 1131 ctcgtcatcctcgtcatcgtcggc 1108



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  tcatcctcgtcatcgtcggc 175
            ||||||||||||||||||||
Sbjct: 1187 tcatcctcgtcatcgtcggc 1168



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>ref|XM_500389.1| Yarrowia lipolytica CLIB122, YALI0B01540g predicted mRNA
          Length = 210

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 151 actcgtcatcctcgtcatcgtcg 173
           |||||||||||||||||||||||
Sbjct: 208 actcgtcatcctcgtcatcgtcg 186



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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 151    actcgtcatcctcgtcatcgtcg 173
              |||||||||||||||||||||||
Sbjct: 245151 actcgtcatcctcgtcatcgtcg 245173



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>ref|XM_366233.1| Magnaporthe grisea 70-15 predicted protein (MG10452.4) partial mRNA
          Length = 738

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 156 tcatcctcgtcatcgtcggcggcaccagca 185
           ||||| |||||||||||||||||| |||||
Sbjct: 452 tcatcgtcgtcatcgtcggcggcagcagca 423



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 156 tcatcctcgtcatcgtcggcggcaccagca 185
           ||||| |||||||||||||||||| |||||
Sbjct: 383 tcatcgtcgtcatcgtcggcggcagcagca 354



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 162 tcgtcatcgtcggcggcaccagca 185
           |||||||||||||||||| |||||
Sbjct: 653 tcgtcatcgtcggcggcagcagca 630



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>ref|XM_363564.1| Magnaporthe grisea 70-15 hypothetical protein (MG01490.4) partial
           mRNA
          Length = 873

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 157 catcctcgtcatcgtcggcgg 177
           |||||||||||||||||||||
Sbjct: 261 catcctcgtcatcgtcggcgg 281



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>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila
              melanogaster library) complete sequence
          Length = 166613

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 153    tcgtcatcctcgtcatcgtcg 173
              |||||||||||||||||||||
Sbjct: 150462 tcgtcatcctcgtcatcgtcg 150442



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>emb|AJ296686.1|PAB296686 Picea abies ATC microsatellite DNA, clone EATC1A02
          Length = 421

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 153 tcgtcatcctcgtcatcgtcg 173
           |||||||||||||||||||||
Sbjct: 191 tcgtcatcctcgtcatcgtcg 211



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>emb|AJ890137.1| Murid Herpesvirus 2 r138 gene (partial), r139 gene, r140 gene, r141
            gene and r142 gene (partial)
          Length = 7462

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 153  tcgtcatcctcgtcatcgtcg 173
            |||||||||||||||||||||
Sbjct: 3340 tcgtcatcctcgtcatcgtcg 3360



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>gb|AC023723.4| Drosophila melanogaster X BAC RP98-48E6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179363

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   tcgtcatcctcgtcatcgtcg 173
             |||||||||||||||||||||
Sbjct: 13719 tcgtcatcctcgtcatcgtcg 13699



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>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163710

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 153    tcgtcatcctcgtcatcgtcg 173
              |||||||||||||||||||||
Sbjct: 111766 tcgtcatcctcgtcatcgtcg 111746



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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    tcgtcatcctcgtcatcgtcg 173
              |||||||||||||||||||||
Sbjct: 190797 tcgtcatcctcgtcatcgtcg 190817



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>ref|NM_132413.1| Drosophila melanogaster CG15295-RA (CG15295), mRNA
          Length = 2288

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 153 tcgtcatcctcgtcatcgtcg 173
           |||||||||||||||||||||
Sbjct: 962 tcgtcatcctcgtcatcgtcg 942



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>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete
              sequence
          Length = 285729

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    tcgtcatcctcgtcatcgtcg 173
              |||||||||||||||||||||
Sbjct: 130980 tcgtcatcctcgtcatcgtcg 131000



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>gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence
          Length = 282600

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    tcgtcatcctcgtcatcgtcg 173
              |||||||||||||||||||||
Sbjct: 115897 tcgtcatcctcgtcatcgtcg 115917



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>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
          Length = 339089

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    tcgtcatcctcgtcatcgtcg 173
              |||||||||||||||||||||
Sbjct: 129620 tcgtcatcctcgtcatcgtcg 129640



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    cctcgtcatcgtcggcggca 179
              ||||||||||||||||||||
Sbjct: 302688 cctcgtcatcgtcggcggca 302669



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>ref|XM_754221.1| Ustilago maydis 521 hypothetical protein (UM03167.1) partial mRNA
          Length = 2610

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 153  tcgtcatcctcgtcatcgtc 172
            ||||||||||||||||||||
Sbjct: 1748 tcgtcatcctcgtcatcgtc 1729



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>ref|XM_754531.1| Ustilago maydis 521 hypothetical protein (UM03477.1) partial mRNA
          Length = 3900

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 153  tcgtcatcctcgtcatcgtc 172
            ||||||||||||||||||||
Sbjct: 1019 tcgtcatcctcgtcatcgtc 1000



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>ref|XM_380961.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00785.1)
           partial mRNA
          Length = 600

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 153 tcgtcatcctcgtcatcgtc 172
           ||||||||||||||||||||
Sbjct: 593 tcgtcatcctcgtcatcgtc 574



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>gb|AF315713.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase
           mRNA, partial cds
          Length = 1767

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 tcctcgtcatcgtcggcggc 178
           ||||||||||||||||||||
Sbjct: 323 tcctcgtcatcgtcggcggc 304



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>gb|AC161114.4| Mus musculus BAC clone RP24-338A5 from chromosome 12, complete sequence
          Length = 220746

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    gttgagggcgttgagcctct 210
              ||||||||||||||||||||
Sbjct: 125822 gttgagggcgttgagcctct 125841



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>gb|AY043490.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase
           (hmg1) mRNA, complete cds
          Length = 1827

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 tcctcgtcatcgtcggcggc 178
           ||||||||||||||||||||
Sbjct: 383 tcctcgtcatcgtcggcggc 364



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>gb|AY039230.1| Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase
           (hmgr) mRNA, complete cds
          Length = 2301

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 tcctcgtcatcgtcggcggc 178
           ||||||||||||||||||||
Sbjct: 536 tcctcgtcatcgtcggcggc 517



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 151      actcgtcatcctcgtcatcgtcggcggc 178
                ||||||| |||||||| |||||||||||
Sbjct: 24219624 actcgtcctcctcgtcgtcgtcggcggc 24219597



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>gb|DQ022844.1| Oryza sativa (japonica cultivar-group) cytochrome P450 mRNA,
           complete cds
          Length = 1719

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 151 actcgtcatcctcgtcatcgtcggcggc 178
           ||||||| |||||||| |||||||||||
Sbjct: 549 actcgtcctcctcgtcgtcgtcggcggc 576



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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 152     ctcgtcatcctcgtcatcgtcggcggca 179
               |||||| || ||||||||||||||||||
Sbjct: 2243576 ctcgtcttcatcgtcatcgtcggcggca 2243603



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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    gagggcgttgagcctctcga 213
              ||||||||||||||||||||
Sbjct: 433386 gagggcgttgagcctctcga 433367



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>gb|AE005004.1| Halobacterium sp. NRC-1 section 35 of 170 of the complete genome
          Length = 11030

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 159  tcctcgtcatcgtcggcggc 178
            ||||||||||||||||||||
Sbjct: 5096 tcctcgtcatcgtcggcggc 5077



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>dbj|AB125365.1| Corvus macrorhynchos DRD4 gene for dopamine receptor D4, exon 1,
           partial cds
          Length = 182

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 156 tcatcctcgtcatcgtcggcggca 179
           |||||||| |||||||||||||||
Sbjct: 61  tcatcctcctcatcgtcggcggca 84



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>dbj|AK121238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096A02, full
           insert sequence
          Length = 1698

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 151 actcgtcatcctcgtcatcgtcggcggc 178
           ||||||| |||||||| |||||||||||
Sbjct: 543 actcgtcctcctcgtcgtcgtcggcggc 570



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 151      actcgtcatcctcgtcatcgtcggcggc 178
                ||||||| |||||||| |||||||||||
Sbjct: 24147830 actcgtcctcctcgtcgtcgtcggcggc 24147803



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>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132733

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 151    actcgtcatcctcgtcatcgtcggcggc 178
              ||||||| |||||||| |||||||||||
Sbjct: 104315 actcgtcctcctcgtcgtcgtcggcggc 104288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,049,652
Number of Sequences: 3902068
Number of extensions: 1049652
Number of successful extensions: 74170
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73900
Number of HSP's gapped (non-prelim): 270
length of query: 215
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 193
effective length of database: 17,147,199,772
effective search space: 3309409555996
effective search space used: 3309409555996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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