| Clone Name | rbags28i03 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | CAR15_MOUSE (Q8K3Z0) Caspase recruitment domain-containing prote... | 29 | 3.5 | 2 | CSMD1_HUMAN (Q96PZ7) CUB and sushi domain-containing protein 1 p... | 28 | 5.9 |
|---|
>CAR15_MOUSE (Q8K3Z0) Caspase recruitment domain-containing protein 15 (Nod2| protein) Length = 1020 Score = 28.9 bits (63), Expect = 3.5 Identities = 19/56 (33%), Positives = 24/56 (42%) Frame = -2 Query: 272 HPRISGAVHSPAIVREKAGRFKXGKAQHKEAGFVSQAGCPSE*IAMLPIYIYRERA 105 HP H PAIVR + +E GF+SQ C LPI+ +RA Sbjct: 109 HPTRDLQSHRPAIVRRLYNHVEAMLELAREGGFLSQYECEE---IRLPIFTSSQRA 161
>CSMD1_HUMAN (Q96PZ7) CUB and sushi domain-containing protein 1 precursor (CUB and| sushi multiple domains protein 1) Length = 3565 Score = 28.1 bits (61), Expect = 5.9 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 225 FTDDGWGVDSPTDSGMSRSSFT 290 F +D WG+D SG+ R FT Sbjct: 3429 FENDNWGLDGYVSSGLERGGFT 3450 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,917,188 Number of Sequences: 219361 Number of extensions: 739897 Number of successful extensions: 1596 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1578 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1596 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)