ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAR15_MOUSE (Q8K3Z0) Caspase recruitment domain-containing prote... 29 3.5
2CSMD1_HUMAN (Q96PZ7) CUB and sushi domain-containing protein 1 p... 28 5.9

>CAR15_MOUSE (Q8K3Z0) Caspase recruitment domain-containing protein 15 (Nod2|
           protein)
          Length = 1020

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -2

Query: 272 HPRISGAVHSPAIVREKAGRFKXGKAQHKEAGFVSQAGCPSE*IAMLPIYIYRERA 105
           HP      H PAIVR      +      +E GF+SQ  C       LPI+   +RA
Sbjct: 109 HPTRDLQSHRPAIVRRLYNHVEAMLELAREGGFLSQYECEE---IRLPIFTSSQRA 161



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>CSMD1_HUMAN (Q96PZ7) CUB and sushi domain-containing protein 1 precursor (CUB and|
            sushi multiple domains protein 1)
          Length = 3565

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 225  FTDDGWGVDSPTDSGMSRSSFT 290
            F +D WG+D    SG+ R  FT
Sbjct: 3429 FENDNWGLDGYVSSGLERGGFT 3450


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,917,188
Number of Sequences: 219361
Number of extensions: 739897
Number of successful extensions: 1596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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