| Clone Name | rbags28h16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX088686.5| Zebrafish DNA sequence from clone CH211-157M21 in linkage group 20, complete sequence Length = 102917 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 atgatttcaataccacaaatt 41 ||||||||||||||||||||| Sbjct: 99685 atgatttcaataccacaaatt 99705
>gb|AF100663.2| Caenorhabditis elegans cosmid K08B4, complete sequence Length = 34919 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 aatttcagtaaatgatttca 29 |||||||||||||||||||| Sbjct: 211 aatttcagtaaatgatttca 192
>gb|AC006659.1| Caenorhabditis elegans fosmid H16O14, complete sequence Length = 26644 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 aatttcagtaaatgatttca 29 |||||||||||||||||||| Sbjct: 25955 aatttcagtaaatgatttca 25936
>gb|AC022015.6| Homo sapiens chromosome 10 clone RP11-153O5, complete sequence Length = 135198 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atttcagtaaatgatttcaa 30 |||||||||||||||||||| Sbjct: 118564 atttcagtaaatgatttcaa 118583
>gb|AC023687.3| Drosophila melanogaster X BAC RP98-36C7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185848 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gcctttcgccattctccatt 183 |||||||||||||||||||| Sbjct: 93922 gcctttcgccattctccatt 93903
>gb|AC017109.5| Homo sapiens chromosome 4 clone RP11-568O24, complete sequence Length = 195169 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ttcgccattctccattataa 187 |||||||||||||||||||| Sbjct: 38953 ttcgccattctccattataa 38972
>gb|AE003488.3| Drosophila melanogaster chromosome X, section 40 of 74 of the complete sequence Length = 315134 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gcctttcgccattctccatt 183 |||||||||||||||||||| Sbjct: 256216 gcctttcgccattctccatt 256235
>ref|XM_632583.1| Dictyostelium discoideum hypothetical protein (DDB0218841), partial mRNA Length = 13779 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 gtaaatgatttcaatacca 35 ||||||||||||||||||| Sbjct: 4207 gtaaatgatttcaatacca 4225
>gb|AC139130.10| Mus musculus chromosome 15, clone RP23-210B16, complete sequence Length = 198154 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 19 aaatgatttcaataccacaaatt 41 ||||| ||||||||||||||||| Sbjct: 75287 aaatgctttcaataccacaaatt 75265
>ref|XM_459463.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E03861g) partial mRNA Length = 1764 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 172 ccattctccattataatta 190 ||||||||||||||||||| Sbjct: 1095 ccattctccattataatta 1077
>gb|AC161213.3| Mus musculus chromosome 3, clone RP23-77D22, complete sequence Length = 196596 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 aaatgatttcaataccaca 37 ||||||||||||||||||| Sbjct: 95627 aaatgatttcaataccaca 95609
>gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, complete sequence Length = 205123 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 tacatgaatccacaagtgt 70 ||||||||||||||||||| Sbjct: 168126 tacatgaatccacaagtgt 168144
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 atttcagtaaatgatttca 29 ||||||||||||||||||| Sbjct: 31697715 atttcagtaaatgatttca 31697697
>gb|AC121992.3| Mus musculus BAC clone RP24-300I17 from chromosome 12, complete sequence Length = 139943 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 tacatgaatccacaagtgt 70 ||||||||||||||||||| Sbjct: 101028 tacatgaatccacaagtgt 101010
>gb|AC129305.4| Mus musculus BAC clone RP24-472F1 from chromosome 12, complete sequence Length = 159429 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 tacatgaatccacaagtgt 70 ||||||||||||||||||| Sbjct: 17136 tacatgaatccacaagtgt 17154
>emb|AL391385.8| Human DNA sequence from clone RP11-60D15 on chromosome 6 Contains part of gene KIAA1733 and a CpG island, complete sequence Length = 77564 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 atttcagtaaatgatttca 29 ||||||||||||||||||| Sbjct: 54381 atttcagtaaatgatttca 54399
>emb|AL359925.9| Human DNA sequence from clone RP11-199B17 on chromosome 13 Contains a novel gene, complete sequence Length = 150088 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 atgatttcaataccacaaa 39 ||||||||||||||||||| Sbjct: 11102 atgatttcaataccacaaa 11084
>emb|AL035447.6|HS1183I21 Human DNA sequence from clone RP5-1183I21 on chromosome 20q12 Contains a novel gene, the 5' end of a novel gene, the 5' end of the JPH2 gene for junctophilin 2 (JP2, JP-2) and a CpG island, complete sequence Length = 54084 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 56 tgaatccacaagtgtagaa 74 ||||||||||||||||||| Sbjct: 37634 tgaatccacaagtgtagaa 37616
>emb|AL772233.6| Mouse DNA sequence from clone RP23-432I13 on chromosome 4, complete sequence Length = 191553 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 gaactagtgtaagagaaat 90 ||||||||||||||||||| Sbjct: 21709 gaactagtgtaagagaaat 21691
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 atttcagtaaatgatttca 29 ||||||||||||||||||| Sbjct: 22941 atttcagtaaatgatttca 22923
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 172 ccattctccattataatta 190 ||||||||||||||||||| Sbjct: 276570 ccattctccattataatta 276588
>emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, complete sequence Length = 90800 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 aagtgtagaactagtgtaa 83 ||||||||||||||||||| Sbjct: 86324 aagtgtagaactagtgtaa 86342
>gb|AC021887.4|AC021887 Homo sapiens BAC clone RP11-777M17 from 12, complete sequence Length = 194497 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 ctacatgaatccacaagtg 69 ||||||||||||||||||| Sbjct: 140539 ctacatgaatccacaagtg 140557
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 atttcagtaaatgatttca 29 ||||||||||||||||||| Sbjct: 31788231 atttcagtaaatgatttca 31788213
>gb|AC026756.15|AC026756 Homo sapiens chromosome 13 clone RP11-286P8, complete sequence Length = 156555 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 atgatttcaataccacaaa 39 ||||||||||||||||||| Sbjct: 68497 atgatttcaataccacaaa 68515
>gb|AC132572.3| Mus musculus BAC clone RP24-409B13 from chromosome 12, complete sequence Length = 131385 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 tacatgaatccacaagtgt 70 ||||||||||||||||||| Sbjct: 3304 tacatgaatccacaagtgt 3286
>dbj|BS000053.1| Pan troglodytes chromosome 22 clone:RP43-183N09, map 22, complete sequences Length = 32467 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 ttcaataccacaaattttc 44 ||||||||||||||||||| Sbjct: 18793 ttcaataccacaaattttc 18811
>gb|AC103389.10| Mus musculus chromosome 3, clone RP24-419J17, complete sequence Length = 162643 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 aaatgatttcaataccaca 37 ||||||||||||||||||| Sbjct: 12221 aaatgatttcaataccaca 12203
>emb|CR628386.8| Zebrafish DNA sequence from clone CH211-241O7 in linkage group 10, complete sequence Length = 148044 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 179 ccattataattaaacagaa 197 ||||||||||||||||||| Sbjct: 43834 ccattataattaaacagaa 43852
>emb|AL121768.4|CNS01DSB Human chromosome 14 DNA sequence BAC R-976B16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 213239 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 177 ctccattataattaaacag 195 ||||||||||||||||||| Sbjct: 208963 ctccattataattaaacag 208981
>emb|AL133238.3|CNS01DUB Human chromosome 14 DNA sequence BAC C-2510G9 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 185132 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 177 ctccattataattaaacag 195 ||||||||||||||||||| Sbjct: 173987 ctccattataattaaacag 173969
>emb|AL713894.12| Mouse DNA sequence from clone RP23-48J18 on chromosome X, complete sequence Length = 264395 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 164 gcctttcgccattctccattata 186 ||||||||||||||||| ||||| Sbjct: 164656 gcctttcgccattctcccttata 164678 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,922,626 Number of Sequences: 3902068 Number of extensions: 1922626 Number of successful extensions: 126909 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126723 Number of HSP's gapped (non-prelim): 186 length of query: 197 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 175 effective length of database: 17,147,199,772 effective search space: 3000759960100 effective search space used: 3000759960100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)