ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28h16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX088686.5| Zebrafish DNA sequence from clone CH211-157M21 i... 42 0.63
2gb|AF100663.2| Caenorhabditis elegans cosmid K08B4, complete seq... 40 2.5
3gb|AC006659.1| Caenorhabditis elegans fosmid H16O14, complete se... 40 2.5
4gb|AC022015.6| Homo sapiens chromosome 10 clone RP11-153O5, comp... 40 2.5
5gb|AC023687.3| Drosophila melanogaster X BAC RP98-36C7 (Roswell ... 40 2.5
6gb|AC017109.5| Homo sapiens chromosome 4 clone RP11-568O24, comp... 40 2.5
7gb|AE003488.3| Drosophila melanogaster chromosome X, section 40 ... 40 2.5
8ref|XM_632583.1| Dictyostelium discoideum hypothetical protein (... 38 9.8
9gb|AC139130.10| Mus musculus chromosome 15, clone RP23-210B16, c... 38 9.8
10ref|XM_459463.1| Debaryomyces hansenii CBS767 hypothetical prote... 38 9.8
11gb|AC161213.3| Mus musculus chromosome 3, clone RP23-77D22, comp... 38 9.8
12gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, c... 38 9.8
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.8
14gb|AC121992.3| Mus musculus BAC clone RP24-300I17 from chromosom... 38 9.8
15gb|AC129305.4| Mus musculus BAC clone RP24-472F1 from chromosome... 38 9.8
16emb|AL391385.8| Human DNA sequence from clone RP11-60D15 on chro... 38 9.8
17emb|AL359925.9| Human DNA sequence from clone RP11-199B17 on chr... 38 9.8
18emb|AL035447.6|HS1183I21 Human DNA sequence from clone RP5-1183I... 38 9.8
19emb|AL772233.6| Mouse DNA sequence from clone RP23-432I13 on chr... 38 9.8
20gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genom... 38 9.8
21emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 38 9.8
22emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, c... 38 9.8
23gb|AC021887.4|AC021887 Homo sapiens BAC clone RP11-777M17 from 1... 38 9.8
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
25gb|AC026756.15|AC026756 Homo sapiens chromosome 13 clone RP11-28... 38 9.8
26gb|AC132572.3| Mus musculus BAC clone RP24-409B13 from chromosom... 38 9.8
27dbj|BS000053.1| Pan troglodytes chromosome 22 clone:RP43-183N09,... 38 9.8
28gb|AC103389.10| Mus musculus chromosome 3, clone RP24-419J17, co... 38 9.8
29emb|CR628386.8| Zebrafish DNA sequence from clone CH211-241O7 in... 38 9.8
30emb|AL121768.4|CNS01DSB Human chromosome 14 DNA sequence BAC R-9... 38 9.8
31emb|AL133238.3|CNS01DUB Human chromosome 14 DNA sequence BAC C-2... 38 9.8
32emb|AL713894.12| Mouse DNA sequence from clone RP23-48J18 on chr... 38 9.8

>emb|BX088686.5| Zebrafish DNA sequence from clone CH211-157M21 in linkage group 20,
             complete sequence
          Length = 102917

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    atgatttcaataccacaaatt 41
             |||||||||||||||||||||
Sbjct: 99685 atgatttcaataccacaaatt 99705



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>gb|AF100663.2| Caenorhabditis elegans cosmid K08B4, complete sequence
          Length = 34919

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 10  aatttcagtaaatgatttca 29
           ||||||||||||||||||||
Sbjct: 211 aatttcagtaaatgatttca 192



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>gb|AC006659.1| Caenorhabditis elegans fosmid H16O14, complete sequence
          Length = 26644

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aatttcagtaaatgatttca 29
             ||||||||||||||||||||
Sbjct: 25955 aatttcagtaaatgatttca 25936



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>gb|AC022015.6| Homo sapiens chromosome 10 clone RP11-153O5, complete sequence
          Length = 135198

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     atttcagtaaatgatttcaa 30
              ||||||||||||||||||||
Sbjct: 118564 atttcagtaaatgatttcaa 118583



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>gb|AC023687.3| Drosophila melanogaster X BAC RP98-36C7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 185848

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gcctttcgccattctccatt 183
             ||||||||||||||||||||
Sbjct: 93922 gcctttcgccattctccatt 93903



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>gb|AC017109.5| Homo sapiens chromosome 4 clone RP11-568O24, complete sequence
          Length = 195169

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   ttcgccattctccattataa 187
             ||||||||||||||||||||
Sbjct: 38953 ttcgccattctccattataa 38972



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>gb|AE003488.3| Drosophila melanogaster chromosome X, section 40 of 74 of the complete
              sequence
          Length = 315134

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    gcctttcgccattctccatt 183
              ||||||||||||||||||||
Sbjct: 256216 gcctttcgccattctccatt 256235



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>ref|XM_632583.1| Dictyostelium discoideum hypothetical protein (DDB0218841), partial
            mRNA
          Length = 13779

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 17   gtaaatgatttcaatacca 35
            |||||||||||||||||||
Sbjct: 4207 gtaaatgatttcaatacca 4225



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>gb|AC139130.10| Mus musculus chromosome 15, clone RP23-210B16, complete sequence
          Length = 198154

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 19    aaatgatttcaataccacaaatt 41
             ||||| |||||||||||||||||
Sbjct: 75287 aaatgctttcaataccacaaatt 75265



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>ref|XM_459463.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E03861g)
            partial mRNA
          Length = 1764

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 172  ccattctccattataatta 190
            |||||||||||||||||||
Sbjct: 1095 ccattctccattataatta 1077



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>gb|AC161213.3| Mus musculus chromosome 3, clone RP23-77D22, complete sequence
          Length = 196596

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    aaatgatttcaataccaca 37
             |||||||||||||||||||
Sbjct: 95627 aaatgatttcaataccaca 95609



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>gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, complete sequence
          Length = 205123

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 52     tacatgaatccacaagtgt 70
              |||||||||||||||||||
Sbjct: 168126 tacatgaatccacaagtgt 168144



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 11       atttcagtaaatgatttca 29
                |||||||||||||||||||
Sbjct: 31697715 atttcagtaaatgatttca 31697697



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>gb|AC121992.3| Mus musculus BAC clone RP24-300I17 from chromosome 12, complete sequence
          Length = 139943

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     tacatgaatccacaagtgt 70
              |||||||||||||||||||
Sbjct: 101028 tacatgaatccacaagtgt 101010



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>gb|AC129305.4| Mus musculus BAC clone RP24-472F1 from chromosome 12, complete sequence
          Length = 159429

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    tacatgaatccacaagtgt 70
             |||||||||||||||||||
Sbjct: 17136 tacatgaatccacaagtgt 17154



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>emb|AL391385.8| Human DNA sequence from clone RP11-60D15 on chromosome 6 Contains part
             of gene KIAA1733 and a CpG island, complete sequence
          Length = 77564

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    atttcagtaaatgatttca 29
             |||||||||||||||||||
Sbjct: 54381 atttcagtaaatgatttca 54399



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>emb|AL359925.9| Human DNA sequence from clone RP11-199B17 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 150088

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    atgatttcaataccacaaa 39
             |||||||||||||||||||
Sbjct: 11102 atgatttcaataccacaaa 11084



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>emb|AL035447.6|HS1183I21 Human DNA sequence from clone RP5-1183I21 on chromosome 20q12 Contains
             a novel gene, the 5' end of a novel gene, the 5' end of
             the JPH2 gene for junctophilin 2 (JP2, JP-2) and a CpG
             island, complete sequence
          Length = 54084

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    tgaatccacaagtgtagaa 74
             |||||||||||||||||||
Sbjct: 37634 tgaatccacaagtgtagaa 37616



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>emb|AL772233.6| Mouse DNA sequence from clone RP23-432I13 on chromosome 4, complete
             sequence
          Length = 191553

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    gaactagtgtaagagaaat 90
             |||||||||||||||||||
Sbjct: 21709 gaactagtgtaagagaaat 21691



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>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete
             sequence
          Length = 134496

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    atttcagtaaatgatttca 29
             |||||||||||||||||||
Sbjct: 22941 atttcagtaaatgatttca 22923



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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 172    ccattctccattataatta 190
              |||||||||||||||||||
Sbjct: 276570 ccattctccattataatta 276588



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>emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, complete sequence
          Length = 90800

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    aagtgtagaactagtgtaa 83
             |||||||||||||||||||
Sbjct: 86324 aagtgtagaactagtgtaa 86342



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>gb|AC021887.4|AC021887 Homo sapiens BAC clone RP11-777M17 from 12, complete sequence
          Length = 194497

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     ctacatgaatccacaagtg 69
              |||||||||||||||||||
Sbjct: 140539 ctacatgaatccacaagtg 140557



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 11       atttcagtaaatgatttca 29
                |||||||||||||||||||
Sbjct: 31788231 atttcagtaaatgatttca 31788213



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>gb|AC026756.15|AC026756 Homo sapiens chromosome 13 clone RP11-286P8, complete sequence
          Length = 156555

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    atgatttcaataccacaaa 39
             |||||||||||||||||||
Sbjct: 68497 atgatttcaataccacaaa 68515



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>gb|AC132572.3| Mus musculus BAC clone RP24-409B13 from chromosome 12, complete
            sequence
          Length = 131385

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 52   tacatgaatccacaagtgt 70
            |||||||||||||||||||
Sbjct: 3304 tacatgaatccacaagtgt 3286



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>dbj|BS000053.1| Pan troglodytes chromosome 22 clone:RP43-183N09, map 22, complete
             sequences
          Length = 32467

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    ttcaataccacaaattttc 44
             |||||||||||||||||||
Sbjct: 18793 ttcaataccacaaattttc 18811



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>gb|AC103389.10| Mus musculus chromosome 3, clone RP24-419J17, complete sequence
          Length = 162643

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    aaatgatttcaataccaca 37
             |||||||||||||||||||
Sbjct: 12221 aaatgatttcaataccaca 12203



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>emb|CR628386.8| Zebrafish DNA sequence from clone CH211-241O7 in linkage group 10,
             complete sequence
          Length = 148044

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 179   ccattataattaaacagaa 197
             |||||||||||||||||||
Sbjct: 43834 ccattataattaaacagaa 43852



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>emb|AL121768.4|CNS01DSB Human chromosome 14 DNA sequence BAC R-976B16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 213239

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 177    ctccattataattaaacag 195
              |||||||||||||||||||
Sbjct: 208963 ctccattataattaaacag 208981



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>emb|AL133238.3|CNS01DUB Human chromosome 14 DNA sequence BAC C-2510G9 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185132

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 177    ctccattataattaaacag 195
              |||||||||||||||||||
Sbjct: 173987 ctccattataattaaacag 173969



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>emb|AL713894.12| Mouse DNA sequence from clone RP23-48J18 on chromosome X, complete
              sequence
          Length = 264395

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 164    gcctttcgccattctccattata 186
              ||||||||||||||||| |||||
Sbjct: 164656 gcctttcgccattctcccttata 164678


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,922,626
Number of Sequences: 3902068
Number of extensions: 1922626
Number of successful extensions: 126909
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126723
Number of HSP's gapped (non-prelim): 186
length of query: 197
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 175
effective length of database: 17,147,199,772
effective search space: 3000759960100
effective search space used: 3000759960100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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