>T2FA_XENLA (Q04870) Transcription initiation factor IIF alpha subunit (EC|
           2.7.11.1) (TFIIF-alpha) (Transcription initiation factor
           RAP74)
          Length = 524

 Score = 38.1 bits (87), Expect = 0.025
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -2

Query: 595 TPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF---KSRLRGPEDK 425
           T   S P P++  S  S+    +TE+ +R  L    P+TT+DL+ +F   K+ L   +  
Sbjct: 439 TSGKSTPQPQSGKSTPSSGDIQLTEEAVRRYLTR-KPMTTKDLLKKFQTKKTGLSSEQTV 497

Query: 424 NAFAEILKKISKIQK 380
           N  A+ILK+++  +K
Sbjct: 498 NVLAQILKRLNPDRK 512

>T2FA_HUMAN (P35269) Transcription initiation factor IIF alpha subunit (EC|
           2.7.11.1) (TFIIF-alpha) (Transcription initiation factor
           RAP74) (General transcription factor IIF polypeptide 1
           74 kDa subunit protein)
          Length = 517

 Score = 36.2 bits (82), Expect = 0.095
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
 Frame = -2

Query: 583 SKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF---KSRLRGPEDKNAFA 413
           S P P +  +  ++    VTED +R  L    P+TT+DL+ +F   K+ L   +  N  A
Sbjct: 436 STPQPPSGKTTPNSGDVQVTEDAVRRYLTR-KPMTTKDLLKKFQTKKTGLSSEQTVNVLA 494

Query: 412 EILKKISKIQK 380
           +ILK+++  +K
Sbjct: 495 QILKRLNPERK 505

>FIB2_ADEG1 (Q64762) Fiber protein 2|
          Length = 410

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 408 ISAKAFLSSGPRSLDLNLDTKSCVVTGATARRTVLISSSVTGDTLALFNEAQAFGVGFDE 587
           IS    L++    +DLN+D K+ VV G++ +  + +     G   AL + AQ  GV  DE
Sbjct: 101 ISTAGPLTTTANGIDLNIDPKTLVVDGSSGKNVLGVLLKGQG---ALQSSAQGIGVAVDE 157

Query: 588 A 590
           +
Sbjct: 158 S 158

>KI67_HUMAN (P46013) Antigen KI-67|
          Length = 3256

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = -2

Query: 619  KTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF---KS 449
            K + +++E  A  K TP A  ++ +   +   E +I T +    PV   DL+      K 
Sbjct: 1882 KKADVEEEFLAFRKLTPSAGKAMHTPKAAVGEEKDINTFV--GTPVEKLDLLGNLPGSKR 1939

Query: 448  RLRGPEDKNAFAEILKKISKIQKTNGHNYVVLREDK 341
            R + P++K    E L    ++ +T GH    + +DK
Sbjct: 1940 RPQTPKEKAKALEDLAGFKELFQTPGHTEESMTDDK 1975

>IF2_STRT1 (Q5M1B9) Translation initiation factor IF-2|
          Length = 943

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = -2

Query: 634 VESDTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF 455
           + S  K  + KDE    SKP PKA  + K   V P   D+      A A  T++  V   
Sbjct: 46  ITSSLKAGTAKDE----SKPAPKATPTPKEEKVEPKV-DKASVAKSAPAKETSKAEVKEA 100

Query: 454 KSRLRGPEDKNAFAE 410
              L+ P+ +N  AE
Sbjct: 101 SVALKKPKSRNFKAE 115

>IF2_STRT2 (Q5M5V5) Translation initiation factor IF-2|
          Length = 943

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = -2

Query: 634 VESDTKTSSIKDETPASSKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRF 455
           + S  K  + KDE    SKP PKA  + K   V P   D+      A A  T++  V   
Sbjct: 46  ITSSLKPGTAKDE----SKPAPKATPTPKEEKVEPKV-DKASVAKSAPAKETSKAEVKEA 100

Query: 454 KSRLRGPEDKNAFAE 410
              L+ P+ +N  AE
Sbjct: 101 SVALKKPKSRNFKAE 115

>IL1AP_MACMU (P59822) Interleukin-1 receptor accessory protein precursor (IL-1|
           receptor accessory protein) (IL-1RAcP)
          Length = 570

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 526 TEDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVV 356
           TEDE RT +L++  VT++DL   +    R     +A  E+ K  +  QK     Y V
Sbjct: 307 TEDETRTQILSIKKVTSEDLKRSYVCHAR-----SAKGEVAKAATVKQKVPAPRYTV 358

>IL1AP_HUMAN (Q9NPH3) Interleukin-1 receptor accessory protein precursor (IL-1|
           receptor accessory protein) (IL-1RAcP)
          Length = 570

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 526 TEDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVV 356
           TEDE RT +L++  VT++DL   +    R     +A  E+ K     QK     Y V
Sbjct: 307 TEDETRTQILSIKKVTSEDLKRSYVCHAR-----SAKGEVAKAAKVKQKVPAPRYTV 358

>AMPE_MOUSE (P16406) Glutamyl aminopeptidase (EC 3.4.11.7) (EAP)|
           (Aminopeptidase A) (APA) (BP-1/6C3 antigen)
          Length = 945

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -2

Query: 604 KDETPASSKPTPKACASL--KSANVSPVTEDE 515
           +D TPA S+P P+A  +L  +  NV P +EDE
Sbjct: 45  QDTTPAPSQPPPEASTALPPQDQNVCPDSEDE 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,771,678
Number of Sequences: 219361
Number of extensions: 1696152
Number of successful extensions: 4347
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4329
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)