ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28g22 |
|---|---|
| Clone Library Name | barley_pub |
>Y750_METJA (Q58160) Hypothetical protein MJ0750| Length = 238 Score = 35.4 bits (80), Expect = 0.15 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = -3 Query: 271 IISLVATYY*ILYCICSRCNVGRYRCLLFVAKGLCIMGCVLLVMY---ISFLHQFCLDCS 101 I+SLV TYY +Y C C +G L L I+ L + + ++F FC + Sbjct: 110 ILSLVLTYYLSIYAFCQVCPIGFLTNLYGTVISLIILIFFLSLSFFVPMAFCRYFCPLGA 169 Query: 100 FLHVYSSEP 74 FL ++S +P Sbjct: 170 FLSIFSIKP 178
>ATP6_TRYBB (P24499) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 229 Score = 35.0 bits (79), Expect = 0.20 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = -3 Query: 202 YRCLLFVAKGLCIMGCVLLVMYISFLHQFCLDCSFL---HVYSSEPGLFCCHLRFVLCML 32 Y C+ ++ L ++ C++ ++YI+FL FC C F ++ + + +RF+LC L Sbjct: 73 YYCITYL--NLYLLFCIVFLLYIAFLFLFCFLCDFFLFNNLLVGDSFMDVFFIRFLLCFL 130
>PARC_STAAW (Q8NWU8) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -2 Query: 650 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 471 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAU (P50073) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -2 Query: 650 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 471 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAS (Q6G9K4) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -2 Query: 650 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 471 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAR (Q6GH50) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -2 Query: 650 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 471 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAN (Q93KF4) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -2 Query: 650 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 471 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAM (Q931S2) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -2 Query: 650 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 471 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAAC (Q5HG64) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -2 Query: 650 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 471 Y D+ HN++ I+ T Y ++PD I N ++ + G D GI++GI+G Sbjct: 175 YATDIPPHNLAEVIQATLKYIDNPD---------ITVNQLMKYIKGPDFPTGGIIQGIDG 225
>PARC_STAES (Q8CSN8) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/60 (31%), Positives = 29/60 (48%) Frame = -2 Query: 650 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 471 Y D+ HN++ I+ T Y + PD I N ++ + G D GI++GIEG Sbjct: 175 YATDIPPHNLAEVIQGTLKYIDQPD---------ITINQLMKYIKGPDFPTGGIIQGIEG 225
>PARC_STAEQ (Q5HPI5) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 800 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/60 (31%), Positives = 29/60 (48%) Frame = -2 Query: 650 YIADVSMHNVSMAIRITGNYGEHPDSKYDKNALPIISNITIENVVGIDVGVAGILEGIEG 471 Y D+ HN++ I+ T Y + PD I N ++ + G D GI++GIEG Sbjct: 175 YATDIPPHNLAEVIQGTLKYIDQPD---------ITINQLMKYIKGPDFPTGGIIQGIEG 225
>MP44_YLDV (Q9DHR2) Probable metalloendopeptidase G1-type (EC 3.4.24.-)| Length = 590 Score = 29.6 bits (65), Expect = 8.5 Identities = 22/69 (31%), Positives = 37/69 (53%) Frame = -2 Query: 578 DSKYDKNALPIISNITIENVVGIDVGVAGILEGIEGDNFSSICISNVSLSVRSRYPWNCS 399 +S +K+ I++ EN +G +G+A +LE I SS ++N S + + W CS Sbjct: 13 NSNMNKDIYLGIASFGFENDIGEILGIAHLLEHILISFDSSKFVANASTARKYMSFWCCS 72 Query: 398 RIQGYSNSV 372 I+G SN + Sbjct: 73 -IKGKSNYI 80
>CVP1_PIMHY (Q8T0W5) Cysteine-rich venom protein 1 precursor| Length = 85 Score = 29.6 bits (65), Expect = 8.5 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = -2 Query: 401 SRIQGYSNSVTPESCEQLKTDCEETPICYNGGSSLAFRSRASIHNKPSGNILLNSL 234 +RI P +CE DC ETP C G F I N GN + SL Sbjct: 32 NRIYKTCGPACPPTCEDPDPDCNETPQCKAG----CFCIPGLIENMKGGNCISPSL 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,110,554 Number of Sequences: 219361 Number of extensions: 1970098 Number of successful extensions: 6370 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5868 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6358 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
