ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479065.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3665 Score = 93.7 bits (47), Expect = 3e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 214 attgggggctggagttgctttagtcgttgaacaacttgcttcatagttggccgtatagag 273 ||||| ||||| ||||||||||| |||||||| || |||||||||||||| |||| |||| Sbjct: 3434 attggtggctgaagttgctttagccgttgaacgacctgcttcatagttggtcgtacagag 3375 Query: 274 agcgattcaacagtacacatcactgattaatgcaa 308 || || |||||||| |||||||||| | ||||||| Sbjct: 3374 agtgaatcaacagtgcacatcactgctaaatgcaa 3340 Score = 69.9 bits (35), Expect = 5e-09 Identities = 103/119 (86%), Gaps = 5/119 (4%) Strand = Plus / Minus Query: 1 tgttaatttacatnctgcttctacttatatgcagnatacattagtgggcaattaagtggg 60 ||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||| |||| Sbjct: 3628 tgttaatttacat-ctgct-cttcttatctgcag-atacattagtgagcaattcagtgaa 3572 Query: 61 gaactctattatacaaagctggcatctacaagataagatctagttaaacaattgattag 119 |||| ||||||||| |||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 3571 -aactgtattatacagagctggcatctacaagataa-atctagtcaaacagatgattag 3515
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 93.7 bits (47), Expect = 3e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 214 attgggggctggagttgctttagtcgttgaacaacttgcttcatagttggccgtatagag 273 ||||| ||||| ||||||||||| |||||||| || |||||||||||||| |||| |||| Sbjct: 24570916 attggtggctgaagttgctttagccgttgaacgacctgcttcatagttggtcgtacagag 24570857 Query: 274 agcgattcaacagtacacatcactgattaatgcaa 308 || || |||||||| |||||||||| | ||||||| Sbjct: 24570856 agtgaatcaacagtgcacatcactgctaaatgcaa 24570822 Score = 69.9 bits (35), Expect = 5e-09 Identities = 103/119 (86%), Gaps = 5/119 (4%) Strand = Plus / Minus Query: 1 tgttaatttacatnctgcttctacttatatgcagnatacattagtgggcaattaagtggg 60 ||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||| |||| Sbjct: 24571110 tgttaatttacat-ctgct-cttcttatctgcag-atacattagtgagcaattcagtgaa 24571054 Query: 61 gaactctattatacaaagctggcatctacaagataagatctagttaaacaattgattag 119 |||| ||||||||| |||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 24571053 -aactgtattatacagagctggcatctacaagataa-atctagtcaaacagatgattag 24570997
>dbj|AP005809.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0039M16 Length = 133229 Score = 93.7 bits (47), Expect = 3e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 214 attgggggctggagttgctttagtcgttgaacaacttgcttcatagttggccgtatagag 273 ||||| ||||| ||||||||||| |||||||| || |||||||||||||| |||| |||| Sbjct: 26983 attggtggctgaagttgctttagccgttgaacgacctgcttcatagttggtcgtacagag 26924 Query: 274 agcgattcaacagtacacatcactgattaatgcaa 308 || || |||||||| |||||||||| | ||||||| Sbjct: 26923 agtgaatcaacagtgcacatcactgctaaatgcaa 26889 Score = 69.9 bits (35), Expect = 5e-09 Identities = 103/119 (86%), Gaps = 5/119 (4%) Strand = Plus / Minus Query: 1 tgttaatttacatnctgcttctacttatatgcagnatacattagtgggcaattaagtggg 60 ||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||| |||| Sbjct: 27177 tgttaatttacat-ctgct-cttcttatctgcag-atacattagtgagcaattcagtgaa 27121 Query: 61 gaactctattatacaaagctggcatctacaagataagatctagttaaacaattgattag 119 |||| ||||||||| |||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 27120 -aactgtattatacagagctggcatctacaagataa-atctagtcaaacagatgattag 27064
>dbj|AP005807.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0018H10 Length = 135879 Score = 93.7 bits (47), Expect = 3e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 214 attgggggctggagttgctttagtcgttgaacaacttgcttcatagttggccgtatagag 273 ||||| ||||| ||||||||||| |||||||| || |||||||||||||| |||| |||| Sbjct: 64210 attggtggctgaagttgctttagccgttgaacgacctgcttcatagttggtcgtacagag 64151 Query: 274 agcgattcaacagtacacatcactgattaatgcaa 308 || || |||||||| |||||||||| | ||||||| Sbjct: 64150 agtgaatcaacagtgcacatcactgctaaatgcaa 64116 Score = 69.9 bits (35), Expect = 5e-09 Identities = 103/119 (86%), Gaps = 5/119 (4%) Strand = Plus / Minus Query: 1 tgttaatttacatnctgcttctacttatatgcagnatacattagtgggcaattaagtggg 60 ||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||| |||| Sbjct: 64404 tgttaatttacat-ctgct-cttcttatctgcag-atacattagtgagcaattcagtgaa 64348 Query: 61 gaactctattatacaaagctggcatctacaagataagatctagttaaacaattgattag 119 |||| ||||||||| |||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 64347 -aactgtattatacagagctggcatctacaagataa-atctagtcaaacagatgattag 64291
>dbj|AK100000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N21, full insert sequence Length = 3666 Score = 93.7 bits (47), Expect = 3e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 214 attgggggctggagttgctttagtcgttgaacaacttgcttcatagttggccgtatagag 273 ||||| ||||| ||||||||||| |||||||| || |||||||||||||| |||| |||| Sbjct: 3434 attggtggctgaagttgctttagccgttgaacgacctgcttcatagttggtcgtacagag 3375 Query: 274 agcgattcaacagtacacatcactgattaatgcaa 308 || || |||||||| |||||||||| | ||||||| Sbjct: 3374 agtgaatcaacagtgcacatcactgctaaatgcaa 3340 Score = 69.9 bits (35), Expect = 5e-09 Identities = 103/119 (86%), Gaps = 5/119 (4%) Strand = Plus / Minus Query: 1 tgttaatttacatnctgcttctacttatatgcagnatacattagtgggcaattaagtggg 60 ||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||| |||| Sbjct: 3628 tgttaatttacat-ctgct-cttcttatctgcag-atacattagtgagcaattcagtgaa 3572 Query: 61 gaactctattatacaaagctggcatctacaagataagatctagttaaacaattgattag 119 |||| ||||||||| |||||||||||||||||||| ||||||| ||||| ||||||| Sbjct: 3571 -aactgtattatacagagctggcatctacaagataa-atctagtcaaacagatgattag 3515
>ref|XM_469815.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3744 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 225 gagttgctttagtcgttgaacaacttgcttcat 257 ||||| |||||||||| |||||||||||||||| Sbjct: 3132 gagttcctttagtcgtcgaacaacttgcttcat 3100
>ref|XM_507071.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0081K01.8 patrial mRNA Length = 4315 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 225 gagttgctttagtcgttgaacaacttgcttcat 257 ||||| |||||||||| |||||||||||||||| Sbjct: 3132 gagttcctttagtcgtcgaacaacttgcttcat 3100
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 225 gagttgctttagtcgttgaacaacttgcttcat 257 ||||| |||||||||| |||||||||||||||| Sbjct: 30905202 gagttcctttagtcgtcgaacaacttgcttcat 30905234
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete sequence Length = 122496 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 225 gagttgctttagtcgttgaacaacttgcttcat 257 ||||| |||||||||| |||||||||||||||| Sbjct: 37888 gagttcctttagtcgtcgaacaacttgcttcat 37856
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 225 gagttgctttagtcgttgaacaacttgcttcat 257 ||||| |||||||||| |||||||||||||||| Sbjct: 30995725 gagttcctttagtcgtcgaacaacttgcttcat 30995757
>dbj|AK111668.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153P21, full insert sequence Length = 4499 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 225 gagttgctttagtcgttgaacaacttgcttcat 257 ||||| |||||||||| |||||||||||||||| Sbjct: 3292 gagttcctttagtcgtcgaacaacttgcttcat 3260
>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence Length = 171426 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 agtattgggggctggagttgc 231 ||||||||||||||||||||| Sbjct: 78283 agtattgggggctggagttgc 78303
>ref|XM_472118.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2031 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 acttgcttcatagttggccgt 267 ||||||||||||||||||||| Sbjct: 1817 acttgcttcatagttggccgt 1797
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08, complete sequence Length = 186642 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 acttgcttcatagttggccgt 267 ||||||||||||||||||||| Sbjct: 50760 acttgcttcatagttggccgt 50780
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 acttgcttcatagttggccgt 267 ||||||||||||||||||||| Sbjct: 17678386 acttgcttcatagttggccgt 17678406
>emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081G05, complete sequence Length = 173950 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 acttgcttcatagttggccgt 267 ||||||||||||||||||||| Sbjct: 159125 acttgcttcatagttggccgt 159145
>gb|AC131747.5| Mus musculus BAC clone RP23-36O24 from chromosome 14, complete sequence Length = 212930 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 agctggcatctacaagataagatc 100 ||||||| |||||||||||||||| Sbjct: 57947 agctggcttctacaagataagatc 57924
>emb|CR391975.8| Zebrafish DNA sequence from clone CH211-276C20 in linkage group 18, complete sequence Length = 122652 Score = 40.1 bits (20), Expect = 4.1 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 286 gtacacatcactgattaatgcaacacct 313 |||||||| ||||||||||||||||||| Sbjct: 67571 gtacacat-actgattaatgcaacacct 67597 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,866,551 Number of Sequences: 3902068 Number of extensions: 1866551 Number of successful extensions: 27898 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 27824 Number of HSP's gapped (non-prelim): 70 length of query: 314 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 292 effective length of database: 17,147,199,772 effective search space: 5006982333424 effective search space used: 5006982333424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
