ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF072517.1| Illex argentinus microsatellite Ia422 38 6.5
2gb|AC165280.3| Mus musculus chromosome 3, clone RP23-389C4, comp... 38 6.5
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 6.5
4gb|DQ400502.1| Acanthopagrus latus D-loop, partial sequence; mit... 38 6.5
5gb|AC121099.8| Mus musculus chromosome 3, clone RP24-501F21, com... 38 6.5
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
7gb|AC093388.4| Homo sapiens BAC clone RP11-647K16 from 2, comple... 38 6.5
8gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 38 6.5
9gb|AF549524.1| Acanthopagrus latus isolate A06 mitochondrial D-l... 38 6.5
10gb|AF549515.1| Acanthopagrus latus isolate A07 mitochondrial D-l... 38 6.5
11gb|AF549514.1| Acanthopagrus latus isolate A05 mitochondrial D-l... 38 6.5
12gb|AF549513.1| Acanthopagrus latus isolate A04 mitochondrial D-l... 38 6.5
13gb|AF549512.1| Acanthopagrus latus isolate A03 mitochondrial D-l... 38 6.5
14gb|AF549511.1| Acanthopagrus latus isolate A02 mitochondrial D-l... 38 6.5
15gb|AF549510.1| Acanthopagrus latus isolate A01 mitochondrial D-l... 38 6.5
16gb|DQ247922.1| Zea mays spermidine synthase 2 gene, partial cds 38 6.5

>gb|AF072517.1| Illex argentinus microsatellite Ia422
          Length = 564

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 58  gtaaaagcaggaacaacga 76
           |||||||||||||||||||
Sbjct: 165 gtaaaagcaggaacaacga 147



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>gb|AC165280.3| Mus musculus chromosome 3, clone RP23-389C4, complete sequence
          Length = 201348

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     gatgtatgtgcaggtaaaa 63
              |||||||||||||||||||
Sbjct: 162057 gatgtatgtgcaggtaaaa 162039



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 50       atgtgcaggtaaaagcagg 68
                |||||||||||||||||||
Sbjct: 12271596 atgtgcaggtaaaagcagg 12271614



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>gb|DQ400502.1| Acanthopagrus latus D-loop, partial sequence; mitochondrial
          Length = 419

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                
Query: 35 cacanatatagatgtatgtgca 56
          |||| |||||||||||||||||
Sbjct: 67 cacatatatagatgtatgtgca 46



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>gb|AC121099.8| Mus musculus chromosome 3, clone RP24-501F21, complete sequence
          Length = 157318

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 45     gatgtatgtgcaggtaaaa 63
              |||||||||||||||||||
Sbjct: 126798 gatgtatgtgcaggtaaaa 126816



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 50       atgtgcaggtaaaagcagg 68
                |||||||||||||||||||
Sbjct: 12268359 atgtgcaggtaaaagcagg 12268377



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>gb|AC093388.4| Homo sapiens BAC clone RP11-647K16 from 2, complete sequence
          Length = 111996

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    atatagatgtatgtgcagg 58
             |||||||||||||||||||
Sbjct: 95716 atatagatgtatgtgcagg 95734



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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 50    atgtgcaggtaaaagcagg 68
             |||||||||||||||||||
Sbjct: 41129 atgtgcaggtaaaagcagg 41147



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>gb|AF549524.1| Acanthopagrus latus isolate A06 mitochondrial D-loop, partial
           sequence
          Length = 579

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 35  cacanatatagatgtatgtgca 56
           |||| |||||||||||||||||
Sbjct: 227 cacatatatagatgtatgtgca 206



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>gb|AF549515.1| Acanthopagrus latus isolate A07 mitochondrial D-loop, partial
           sequence
          Length = 580

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 35  cacanatatagatgtatgtgca 56
           |||| |||||||||||||||||
Sbjct: 228 cacatatatagatgtatgtgca 207



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>gb|AF549514.1| Acanthopagrus latus isolate A05 mitochondrial D-loop, partial
           sequence
          Length = 580

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 35  cacanatatagatgtatgtgca 56
           |||| |||||||||||||||||
Sbjct: 228 cacatatatagatgtatgtgca 207



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>gb|AF549513.1| Acanthopagrus latus isolate A04 mitochondrial D-loop, partial
           sequence
          Length = 580

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 35  cacanatatagatgtatgtgca 56
           |||| |||||||||||||||||
Sbjct: 228 cacatatatagatgtatgtgca 207



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>gb|AF549512.1| Acanthopagrus latus isolate A03 mitochondrial D-loop, partial
           sequence
          Length = 580

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 35  cacanatatagatgtatgtgca 56
           |||| |||||||||||||||||
Sbjct: 228 cacatatatagatgtatgtgca 207



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>gb|AF549511.1| Acanthopagrus latus isolate A02 mitochondrial D-loop, partial
           sequence
          Length = 580

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 35  cacanatatagatgtatgtgca 56
           |||| |||||||||||||||||
Sbjct: 228 cacatatatagatgtatgtgca 207



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>gb|AF549510.1| Acanthopagrus latus isolate A01 mitochondrial D-loop, partial
           sequence
          Length = 580

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 35  cacanatatagatgtatgtgca 56
           |||| |||||||||||||||||
Sbjct: 228 cacatatatagatgtatgtgca 207



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>gb|DQ247922.1| Zea mays spermidine synthase 2 gene, partial cds
          Length = 892

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gatgtatgtgcaggtaaaa 63
           |||||||||||||||||||
Sbjct: 294 gatgtatgtgcaggtaaaa 312


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 533,457
Number of Sequences: 3902068
Number of extensions: 533457
Number of successful extensions: 33512
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33473
Number of HSP's gapped (non-prelim): 39
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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