| Clone Name | rbags28g06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF072517.1| Illex argentinus microsatellite Ia422 Length = 564 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 gtaaaagcaggaacaacga 76 ||||||||||||||||||| Sbjct: 165 gtaaaagcaggaacaacga 147
>gb|AC165280.3| Mus musculus chromosome 3, clone RP23-389C4, complete sequence Length = 201348 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 gatgtatgtgcaggtaaaa 63 ||||||||||||||||||| Sbjct: 162057 gatgtatgtgcaggtaaaa 162039
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 atgtgcaggtaaaagcagg 68 ||||||||||||||||||| Sbjct: 12271596 atgtgcaggtaaaagcagg 12271614
>gb|DQ400502.1| Acanthopagrus latus D-loop, partial sequence; mitochondrial Length = 419 Score = 38.2 bits (19), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 cacanatatagatgtatgtgca 56 |||| ||||||||||||||||| Sbjct: 67 cacatatatagatgtatgtgca 46
>gb|AC121099.8| Mus musculus chromosome 3, clone RP24-501F21, complete sequence Length = 157318 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 gatgtatgtgcaggtaaaa 63 ||||||||||||||||||| Sbjct: 126798 gatgtatgtgcaggtaaaa 126816
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 atgtgcaggtaaaagcagg 68 ||||||||||||||||||| Sbjct: 12268359 atgtgcaggtaaaagcagg 12268377
>gb|AC093388.4| Homo sapiens BAC clone RP11-647K16 from 2, complete sequence Length = 111996 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 atatagatgtatgtgcagg 58 ||||||||||||||||||| Sbjct: 95716 atatagatgtatgtgcagg 95734
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 atgtgcaggtaaaagcagg 68 ||||||||||||||||||| Sbjct: 41129 atgtgcaggtaaaagcagg 41147
>gb|AF549524.1| Acanthopagrus latus isolate A06 mitochondrial D-loop, partial sequence Length = 579 Score = 38.2 bits (19), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 cacanatatagatgtatgtgca 56 |||| ||||||||||||||||| Sbjct: 227 cacatatatagatgtatgtgca 206
>gb|AF549515.1| Acanthopagrus latus isolate A07 mitochondrial D-loop, partial sequence Length = 580 Score = 38.2 bits (19), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 cacanatatagatgtatgtgca 56 |||| ||||||||||||||||| Sbjct: 228 cacatatatagatgtatgtgca 207
>gb|AF549514.1| Acanthopagrus latus isolate A05 mitochondrial D-loop, partial sequence Length = 580 Score = 38.2 bits (19), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 cacanatatagatgtatgtgca 56 |||| ||||||||||||||||| Sbjct: 228 cacatatatagatgtatgtgca 207
>gb|AF549513.1| Acanthopagrus latus isolate A04 mitochondrial D-loop, partial sequence Length = 580 Score = 38.2 bits (19), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 cacanatatagatgtatgtgca 56 |||| ||||||||||||||||| Sbjct: 228 cacatatatagatgtatgtgca 207
>gb|AF549512.1| Acanthopagrus latus isolate A03 mitochondrial D-loop, partial sequence Length = 580 Score = 38.2 bits (19), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 cacanatatagatgtatgtgca 56 |||| ||||||||||||||||| Sbjct: 228 cacatatatagatgtatgtgca 207
>gb|AF549511.1| Acanthopagrus latus isolate A02 mitochondrial D-loop, partial sequence Length = 580 Score = 38.2 bits (19), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 cacanatatagatgtatgtgca 56 |||| ||||||||||||||||| Sbjct: 228 cacatatatagatgtatgtgca 207
>gb|AF549510.1| Acanthopagrus latus isolate A01 mitochondrial D-loop, partial sequence Length = 580 Score = 38.2 bits (19), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 cacanatatagatgtatgtgca 56 |||| ||||||||||||||||| Sbjct: 228 cacatatatagatgtatgtgca 207
>gb|DQ247922.1| Zea mays spermidine synthase 2 gene, partial cds Length = 892 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 gatgtatgtgcaggtaaaa 63 ||||||||||||||||||| Sbjct: 294 gatgtatgtgcaggtaaaa 312 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 533,457 Number of Sequences: 3902068 Number of extensions: 533457 Number of successful extensions: 33512 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33473 Number of HSP's gapped (non-prelim): 39 length of query: 137 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 116 effective length of database: 17,151,101,840 effective search space: 1989527813440 effective search space used: 1989527813440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)