ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476984.1| Oryza sativa (japonica cultivar-group), mRNA 174 2e-40
2dbj|AK069901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 133 7e-28
4dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic D... 133 7e-28
5dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic D... 133 7e-28
6gb|AY108888.1| Zea mays PCO079915 mRNA sequence 88 4e-14
7gb|AC166090.23| Glycine max clone gmw1-103e11, complete sequence 60 8e-06
8gb|BT014612.1| Lycopersicon esculentum clone 134095R, mRNA sequence 50 0.008
9gb|AC144516.5| Medicago truncatula clone mth2-28p22, complete se... 48 0.031
10ref|NM_121812.2| Arabidopsis thaliana DRT101 (DNA-DAMAGE-REPAIR/... 44 0.49
11gb|AY075620.1| Arabidopsis thaliana AT5g18070/MRG7_2 mRNA, compl... 44 0.49
12gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 1... 44 0.49
13emb|BX831277.1|CNS0A1ZE Arabidopsis thaliana Full-length cDNA Co... 44 0.49
14dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.49
15dbj|AP002984.3| Homo sapiens genomic DNA, chromosome 11 clone:CT... 44 0.49
16gb|L11367.1|ATHUNIDA Arabidopsis thaliana unidentified mRNA sequ... 44 0.49
17gb|BC084691.1| Danio rerio phosphoglucomutase 3, mRNA (cDNA clon... 42 1.9
18ref|NM_001007053.1| Danio rerio phosphoglucomutase 3 (pgm3), mRNA 42 1.9
19ref|XM_717238.1| Candida albicans SC5314 phosphoacetylglucosamin... 42 1.9
20ref|XM_717124.1| Candida albicans SC5314 phosphoacetylglucosamin... 42 1.9
21gb|AC008751.7| Homo sapiens chromosome 19 clone CTD-2623H2, comp... 42 1.9
22gb|AF253056.1|AF253056 Candida albicans N-acetylglucosamine-phos... 42 1.9
23gb|AC124191.4| Mus musculus BAC clone RP23-275E4 from 18, comple... 42 1.9
24gb|AC147551.5| Mus musculus BAC clone RP23-77G5 from 18, complet... 42 1.9
25dbj|AB032082.1| Candida albicans CaAGM1 gene for phosphoacetylgl... 42 1.9
26gb|AC123697.19| Mus musculus chromosome 5, clone RP23-329M7, com... 40 7.6
27gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 7.6
28gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
29gb|AC132919.9| Mus musculus chromosome 12, clone RP24-356H3, com... 40 7.6
30emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in... 40 7.6
31emb|AL450325.5| Human DNA sequence from clone RP11-17F15 on chro... 40 7.6
32emb|AL355674.10| Human DNA sequence from clone RP11-171A24 on ch... 40 7.6
33emb|AL035465.4|HS197K23 Human DNA sequence from clone RP1-197K23... 40 7.6
34gb|AE008779.1| Salmonella typhimurium LT2, section 83 of 220 of ... 40 7.6
35emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 7.6
36gb|AC095351.5| Homo sapiens X BAC RP11-359C4 (Roswell Park Cance... 40 7.6
37dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 7.6
38gb|AC092671.2| Homo sapiens BAC clone RP11-598I5 from 4, complet... 40 7.6
39gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, comple... 40 7.6
40emb|BX248108.11| Zebrafish DNA sequence from clone CH211-221P4, ... 40 7.6
41dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
42gb|AC026433.4|AC026433 Homo sapiens chromosome 5 clone CTD-2239K... 40 7.6
43gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete... 40 7.6
44gb|AC154281.2| Mus musculus BAC clone RP24-271P6 from chromosome... 40 7.6
45gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 7.6
46emb|BX784032.4| Zebrafish DNA sequence from clone CH211-87N12 in... 40 7.6
47gb|AC154199.2| Mus musculus BAC clone RP24-396N5 from 13, comple... 40 7.6
48gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, com... 40 7.6
49gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 7.6
50gb|AC113980.29| Mus musculus chromosome 5, clone RP24-63G23, com... 40 7.6
51gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 7.6
52dbj|AP003462.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.6
53emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on ch... 40 7.6
54emb|CT027564.7| Mouse DNA sequence from clone RP24-293N14 on chr... 40 7.6
55gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
56gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, comple... 40 7.6
57gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome... 40 7.6
58emb|AL845449.4| Mouse DNA sequence from clone RP23-211M20 on chr... 40 7.6 
>ref|XM_476984.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1999

 Score =  174 bits (88), Expect = 2e-40
 Identities = 193/228 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  ttctgcatcggttgtaacaatagtagtccgatctttcactttaaccttgagttgtttgct 389
            ||||||||| ||||||||||||| | | |||||||  ||||||||||| | |||| | ||
Sbjct: 1562 ttctgcatctgttgtaacaatagaatttcgatcttgaactttaaccttcaattgtctact 1503

                                                                        
Query: 390  tggtagatcagtgtataggtcacaccaattctggaatgaccatctcttatgctgtaaaac 449
             || ||||||||||| ||||||||||||||||| || ||||| | ||| |  || |||||
Sbjct: 1502 gggcagatcagtgtacaggtcacaccaattctgaaacgaccagcccttgtattgcaaaac 1443

                                                                        
Query: 450  agcctccaccaaaagcattccacttatagcgtcacccactgcttgattaattaattgact 509
            |||||||||||||||||||||||||| ||| || || ||||| ||||||||||  |||||
Sbjct: 1442 agcctccaccaaaagcattccacttaaagcatctccaactgcctgattaattagctgact 1383

                                                            
Query: 510  tgtcgctaataatctcaaggcagcttggtgctgtggagaacctgcagc 557
            ||| || || |||||||  ||||||||||| |||| ||||||||||||
Sbjct: 1382 tgtggccaacaatctcatagcagcttggtgttgtgaagaacctgcagc 1335



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 112/133 (84%)
 Strand = Plus / Minus

                                                                        
Query: 139  ccaagaatgcgctcaacatgctgtgctacagattttgcaaggctgtctgctgcttccacg 198
            ||||||||||||||||||||||| || ||   |||||||||||  || ||||||||| | 
Sbjct: 1753 ccaagaatgcgctcaacatgctgcgccactcgttttgcaaggcaatcagctgcttcctct 1694

                                                                        
Query: 199  gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 258
            | |||||||||||||||||| |  ||||||||||| || |||||||| ||||| || || 
Sbjct: 1693 gaagatgcctctgcatatacacgcaccacatcctcggtaccagatggccgcacgaaacat 1634

                         
Query: 259  cgcccgtgagagt 271
            ||||| |||||||
Sbjct: 1633 cgcccatgagagt 1621
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>dbj|AK069901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034C14, full
            insert sequence
          Length = 1999

 Score =  174 bits (88), Expect = 2e-40
 Identities = 193/228 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  ttctgcatcggttgtaacaatagtagtccgatctttcactttaaccttgagttgtttgct 389
            ||||||||| ||||||||||||| | | |||||||  ||||||||||| | |||| | ||
Sbjct: 1562 ttctgcatctgttgtaacaatagaatttcgatcttgaactttaaccttcaattgtctact 1503

                                                                        
Query: 390  tggtagatcagtgtataggtcacaccaattctggaatgaccatctcttatgctgtaaaac 449
             || ||||||||||| ||||||||||||||||| || ||||| | ||| |  || |||||
Sbjct: 1502 gggcagatcagtgtacaggtcacaccaattctgaaacgaccagcccttgtattgcaaaac 1443

                                                                        
Query: 450  agcctccaccaaaagcattccacttatagcgtcacccactgcttgattaattaattgact 509
            |||||||||||||||||||||||||| ||| || || ||||| ||||||||||  |||||
Sbjct: 1442 agcctccaccaaaagcattccacttaaagcatctccaactgcctgattaattagctgact 1383

                                                            
Query: 510  tgtcgctaataatctcaaggcagcttggtgctgtggagaacctgcagc 557
            ||| || || |||||||  ||||||||||| |||| ||||||||||||
Sbjct: 1382 tgtggccaacaatctcatagcagcttggtgttgtgaagaacctgcagc 1335



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 112/133 (84%)
 Strand = Plus / Minus

                                                                        
Query: 139  ccaagaatgcgctcaacatgctgtgctacagattttgcaaggctgtctgctgcttccacg 198
            ||||||||||||||||||||||| || ||   |||||||||||  || ||||||||| | 
Sbjct: 1753 ccaagaatgcgctcaacatgctgcgccactcgttttgcaaggcaatcagctgcttcctct 1694

                                                                        
Query: 199  gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 258
            | |||||||||||||||||| |  ||||||||||| || |||||||| ||||| || || 
Sbjct: 1693 gaagatgcctctgcatatacacgcaccacatcctcggtaccagatggccgcacgaaacat 1634

                         
Query: 259  cgcccgtgagagt 271
            ||||| |||||||
Sbjct: 1633 cgcccatgagagt 1621
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  133 bits (67), Expect = 7e-28
 Identities = 136/159 (85%)
 Strand = Plus / Plus

                                                                           
Query: 394     agatcagtgtataggtcacaccaattctggaatgaccatctcttatgctgtaaaacagcc 453
               ||||||||||| ||||||||||||||||| || ||||| | ||| |  || |||||||||
Sbjct: 5211949 agatcagtgtacaggtcacaccaattctgaaacgaccagcccttgtattgcaaaacagcc 5212008

                                                                           
Query: 454     tccaccaaaagcattccacttatagcgtcacccactgcttgattaattaattgacttgtc 513
               |||||||||||||||||||||| ||| || || ||||| ||||||||||  |||||||| 
Sbjct: 5212009 tccaccaaaagcattccacttaaagcatctccaactgcctgattaattagctgacttgtg 5212068

                                                      
Query: 514     gctaataatctcaaggcagcttggtgctgtggagaacct 552
               || || |||||||  ||||||||||| |||| |||||||
Sbjct: 5212069 gccaacaatctcatagcagcttggtgttgtgaagaacct 5212107



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 112/133 (84%)
 Strand = Plus / Plus

                                                                           
Query: 139     ccaagaatgcgctcaacatgctgtgctacagattttgcaaggctgtctgctgcttccacg 198
               ||||||||||||||||||||||| || ||   |||||||||||  || ||||||||| | 
Sbjct: 5211488 ccaagaatgcgctcaacatgctgcgccactcgttttgcaaggcaatcagctgcttcctct 5211547

                                                                           
Query: 199     gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 258
               | |||||||||||||||||| |  ||||||||||| || |||||||| ||||| || || 
Sbjct: 5211548 gaagatgcctctgcatatacacgcaccacatcctcggtaccagatggccgcacgaaacat 5211607

                            
Query: 259     cgcccgtgagagt 271
               ||||| |||||||
Sbjct: 5211608 cgcccatgagagt 5211620



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 330     ttctgcatcggttgtaacaatagtagtccgatctttcactttaacct 376
               ||||||||| ||||||||||||| | | |||||||  ||||||||||
Sbjct: 5211782 ttctgcatctgttgtaacaatagaatttcgatcttgaactttaacct 5211828
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>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1715_A07
          Length = 130907

 Score =  133 bits (67), Expect = 7e-28
 Identities = 136/159 (85%)
 Strand = Plus / Plus

                                                                         
Query: 394   agatcagtgtataggtcacaccaattctggaatgaccatctcttatgctgtaaaacagcc 453
             ||||||||||| ||||||||||||||||| || ||||| | ||| |  || |||||||||
Sbjct: 78663 agatcagtgtacaggtcacaccaattctgaaacgaccagcccttgtattgcaaaacagcc 78722

                                                                         
Query: 454   tccaccaaaagcattccacttatagcgtcacccactgcttgattaattaattgacttgtc 513
             |||||||||||||||||||||| ||| || || ||||| ||||||||||  |||||||| 
Sbjct: 78723 tccaccaaaagcattccacttaaagcatctccaactgcctgattaattagctgacttgtg 78782

                                                    
Query: 514   gctaataatctcaaggcagcttggtgctgtggagaacct 552
             || || |||||||  ||||||||||| |||| |||||||
Sbjct: 78783 gccaacaatctcatagcagcttggtgttgtgaagaacct 78821



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 112/133 (84%)
 Strand = Plus / Plus

                                                                         
Query: 139   ccaagaatgcgctcaacatgctgtgctacagattttgcaaggctgtctgctgcttccacg 198
             ||||||||||||||||||||||| || ||   |||||||||||  || ||||||||| | 
Sbjct: 78202 ccaagaatgcgctcaacatgctgcgccactcgttttgcaaggcaatcagctgcttcctct 78261

                                                                         
Query: 199   gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 258
             | |||||||||||||||||| |  ||||||||||| || |||||||| ||||| || || 
Sbjct: 78262 gaagatgcctctgcatatacacgcaccacatcctcggtaccagatggccgcacgaaacat 78321

                          
Query: 259   cgcccgtgagagt 271
             ||||| |||||||
Sbjct: 78322 cgcccatgagagt 78334



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 330   ttctgcatcggttgtaacaatagtagtccgatctttcactttaacct 376
             ||||||||| ||||||||||||| | | |||||||  ||||||||||
Sbjct: 78496 ttctgcatctgttgtaacaatagaatttcgatcttgaactttaacct 78542
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>dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0589E08
          Length = 138416

 Score =  133 bits (67), Expect = 7e-28
 Identities = 136/159 (85%)
 Strand = Plus / Plus

                                                                         
Query: 394   agatcagtgtataggtcacaccaattctggaatgaccatctcttatgctgtaaaacagcc 453
             ||||||||||| ||||||||||||||||| || ||||| | ||| |  || |||||||||
Sbjct: 10712 agatcagtgtacaggtcacaccaattctgaaacgaccagcccttgtattgcaaaacagcc 10771

                                                                         
Query: 454   tccaccaaaagcattccacttatagcgtcacccactgcttgattaattaattgacttgtc 513
             |||||||||||||||||||||| ||| || || ||||| ||||||||||  |||||||| 
Sbjct: 10772 tccaccaaaagcattccacttaaagcatctccaactgcctgattaattagctgacttgtg 10831

                                                    
Query: 514   gctaataatctcaaggcagcttggtgctgtggagaacct 552
             || || |||||||  ||||||||||| |||| |||||||
Sbjct: 10832 gccaacaatctcatagcagcttggtgttgtgaagaacct 10870



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 112/133 (84%)
 Strand = Plus / Plus

                                                                         
Query: 139   ccaagaatgcgctcaacatgctgtgctacagattttgcaaggctgtctgctgcttccacg 198
             ||||||||||||||||||||||| || ||   |||||||||||  || ||||||||| | 
Sbjct: 10251 ccaagaatgcgctcaacatgctgcgccactcgttttgcaaggcaatcagctgcttcctct 10310

                                                                         
Query: 199   gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 258
             | |||||||||||||||||| |  ||||||||||| || |||||||| ||||| || || 
Sbjct: 10311 gaagatgcctctgcatatacacgcaccacatcctcggtaccagatggccgcacgaaacat 10370

                          
Query: 259   cgcccgtgagagt 271
             ||||| |||||||
Sbjct: 10371 cgcccatgagagt 10383



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 330   ttctgcatcggttgtaacaatagtagtccgatctttcactttaacct 376
             ||||||||| ||||||||||||| | | |||||||  ||||||||||
Sbjct: 10545 ttctgcatctgttgtaacaatagaatttcgatcttgaactttaacct 10591
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>gb|AY108888.1| Zea mays PCO079915 mRNA sequence
          Length = 450

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 125/152 (82%)
 Strand = Plus / Minus

                                                                       
Query: 199 gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 258
           |||||||||||||| || || | ||||||||| || || || ||||| ||||||||||| 
Sbjct: 212 gtagatgcctctgcgtacacccgtaccacatcttctgtaccggatggacgcacaaagcat 153

                                                                       
Query: 259 cgcccgtgagagtggttaacgacttccttatctatcaattcttgcaagccagatggttgg 318
           |||||||| | || |||  ||   ||||||||||||||||||||||| | ||| ||||||
Sbjct: 152 cgcccgtgggtgtagttggcggtctccttatctatcaattcttgcaaactagaaggttgg 93

                                           
Query: 319 caaactttccgttctgcatcggttgtaacaat 350
           | ||||||    |||||||| |||||||||||
Sbjct: 92  ctaacttttgtctctgcatctgttgtaacaat 61
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>gb|AC166090.23| Glycine max clone gmw1-103e11, complete sequence
          Length = 89397

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                         
Query: 199   gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 258
             ||||||||||| ||||| || |  || ||||| ||||| |||||||||||||||||||||
Sbjct: 37960 gtagatgcctcagcatacacacgaacaacatcttcagtgccagatggtcgcacaaagcac 38019

               
Query: 259   cg 260
             ||
Sbjct: 38020 cg 38021
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>gb|BT014612.1| Lycopersicon esculentum clone 134095R, mRNA sequence
          Length = 2594

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 211  gcatatactcttaccacatcctcagttccagatggtc 247
            |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 2314 gcatatactcttacaacatcctcagtcccagaaggtc 2278
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>gb|AC144516.5| Medicago truncatula clone mth2-28p22, complete sequence
          Length = 111130

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 226    acatcctcagttccagatggtcgcacaaagca 257
              |||||||||||||| |||||||| ||||||||
Sbjct: 109173 acatcctcagttcctgatggtcgaacaaagca 109142
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>ref|NM_121812.2| Arabidopsis thaliana DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101);
            intramolecular transferase, phosphotransferases AT5G18070
            (DRT101) mRNA, complete cds
          Length = 1928

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 205  gcctctgcatatactcttaccacatc 230
            ||||||||||||||||| ||||||||
Sbjct: 1705 gcctctgcatatactctcaccacatc 1680
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>gb|AY075620.1| Arabidopsis thaliana AT5g18070/MRG7_2 mRNA, complete cds
          Length = 1928

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 205  gcctctgcatatactcttaccacatc 230
            ||||||||||||||||| ||||||||
Sbjct: 1705 gcctctgcatatactctcaccacatc 1680
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>gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 11, complete sequence
          Length = 164472

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 92  gtttcagaaaaagatgaaagat 113
           ||||||||||||||||||||||
Sbjct: 444 gtttcagaaaaagatgaaagat 423
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>emb|BX831277.1|CNS0A1ZE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS74ZD05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 716

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 205 gcctctgcatatactcttaccacatc 230
           ||||||||||||||||| ||||||||
Sbjct: 512 gcctctgcatatactctcaccacatc 487
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>dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7
          Length = 83948

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 205  gcctctgcatatactcttaccacatc 230
            ||||||||||||||||| ||||||||
Sbjct: 6217 gcctctgcatatactctcaccacatc 6192
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>dbj|AP002984.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2198F5, complete
             sequence
          Length = 153042

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 92    gtttcagaaaaagatgaaagat 113
             ||||||||||||||||||||||
Sbjct: 58039 gtttcagaaaaagatgaaagat 58018
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>gb|L11367.1|ATHUNIDA Arabidopsis thaliana unidentified mRNA sequence, complete cds
          Length = 1254

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 205  gcctctgcatatactcttaccacatc 230
            ||||||||||||||||| ||||||||
Sbjct: 1055 gcctctgcatatactctcaccacatc 1030
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>gb|BC084691.1| Danio rerio phosphoglucomutase 3, mRNA (cDNA clone MGC:91932
            IMAGE:7040649), complete cds
          Length = 2714

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 223  accacatcctcagttccagatggtc 247
            ||||||||||||||||| |||||||
Sbjct: 1571 accacatcctcagttcctgatggtc 1547
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>ref|NM_001007053.1| Danio rerio phosphoglucomutase 3 (pgm3), mRNA
          Length = 2714

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 223  accacatcctcagttccagatggtc 247
            ||||||||||||||||| |||||||
Sbjct: 1571 accacatcctcagttcctgatggtc 1547
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>ref|XM_717238.1| Candida albicans SC5314 phosphoacetylglucosamine mutase
            (CaO19_12480), mRNA
          Length = 1635

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 481  tcacccactgcttgattaattaattgact 509
            |||||||| | ||||||||||||||||||
Sbjct: 1301 tcacccacagtttgattaattaattgact 1273
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>ref|XM_717124.1| Candida albicans SC5314 phosphoacetylglucosamine mutase (CaO19_5013),
            mRNA
          Length = 1635

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 481  tcacccactgcttgattaattaattgact 509
            |||||||| | ||||||||||||||||||
Sbjct: 1301 tcacccacagtttgattaattaattgact 1273
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>gb|AC008751.7| Homo sapiens chromosome 19 clone CTD-2623H2, complete sequence
          Length = 169089

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 32     atacatatatgtctacattct 52
              |||||||||||||||||||||
Sbjct: 111004 atacatatatgtctacattct 111024
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>gb|AF253056.1|AF253056 Candida albicans N-acetylglucosamine-phosphate mutase gene, complete
            cds
          Length = 2300

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 481  tcacccactgcttgattaattaattgact 509
            |||||||| | ||||||||||||||||||
Sbjct: 1629 tcacccacagtttgattaattaattgact 1601
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>gb|AC124191.4| Mus musculus BAC clone RP23-275E4 from 18, complete sequence
          Length = 203003

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 25     aaacaaaatacatatatgtctacat 49
              ||||||||||||| |||||||||||
Sbjct: 144746 aaacaaaatacatgtatgtctacat 144722
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>gb|AC147551.5| Mus musculus BAC clone RP23-77G5 from 18, complete sequence
          Length = 275269

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 25    aaacaaaatacatatatgtctacat 49
             ||||||||||||| |||||||||||
Sbjct: 22811 aaacaaaatacatgtatgtctacat 22787
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>dbj|AB032082.1| Candida albicans CaAGM1 gene for phosphoacetylglucosamine mutase,
            complete cds
          Length = 3091

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 481  tcacccactgcttgattaattaattgact 509
            |||||||| | ||||||||||||||||||
Sbjct: 2359 tcacccacagtttgattaattaattgact 2331
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>gb|AC123697.19| Mus musculus chromosome 5, clone RP23-329M7, complete sequence
          Length = 183171

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 408    gtcacaccaattctggaatg 427
              ||||||||||||||||||||
Sbjct: 154195 gtcacaccaattctggaatg 154176
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 109     aagataaaagaagaacgcaa 128
               ||||||||||||||||||||
Sbjct: 1860915 aagataaaagaagaacgcaa 1860896
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>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0052H02, complete sequence
          Length = 159632

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    taaaattgaaaattacacgtttca 97
             ||||||| ||||||||||||||||
Sbjct: 14508 taaaattaaaaattacacgtttca 14531
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>gb|AC132919.9| Mus musculus chromosome 12, clone RP24-356H3, complete sequence
          Length = 163965

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   aaagatgaaagataaaagaa 120
             ||||||||||||||||||||
Sbjct: 96008 aaagatgaaagataaaagaa 96027
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>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15,
             complete sequence
          Length = 179357

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    aaaaagatgaaagataaaagaaga 122
             ||||||||||||||||||| ||||
Sbjct: 65605 aaaaagatgaaagataaaacaaga 65628
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>emb|AL450325.5| Human DNA sequence from clone RP11-17F15 on chromosome 6 Contains the
             5' end of the TReP-132 gene for zinc finger transcription
             protein, complete sequence
          Length = 88119

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 97    agaaaaagatgaaagataaaagaa 120
             ||||||| ||||||||||||||||
Sbjct: 30257 agaaaaaaatgaaagataaaagaa 30280
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>emb|AL355674.10| Human DNA sequence from clone RP11-171A24 on chromosome 9 Contains the
             5' end of the RORB gene for RAR-related orphan receptor B
             protein (RZRB, ROR-BETA), two novel genes and two CpG
             islands, complete sequence
          Length = 174874

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 486   cactgcttgattaattaattgact 509
             ||||| ||||||||||||||||||
Sbjct: 52767 cactggttgattaattaattgact 52790
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>emb|AL035465.4|HS197K23 Human DNA sequence from clone RP1-197K23 on chromosome 6q22.2-23.3
             Contains part of the PTPRK gene for protein tyrosine
             phosphatase receptor type K (R-PTP-KAPPA) and the 5' end
             of a novel gene, complete sequence
          Length = 48634

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   gatgaaagataaaagaagaa 123
             ||||||||||||||||||||
Sbjct: 13433 gatgaaagataaaagaagaa 13414
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>gb|AE008779.1| Salmonella typhimurium LT2, section 83 of 220 of the complete genome
          Length = 25184

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   ggcaaactttccgttctgca 336
             ||||||||||||||||||||
Sbjct: 13702 ggcaaactttccgttctgca 13721
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>emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 7/20
          Length = 233050

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    ggcaaactttccgttctgca 336
              ||||||||||||||||||||
Sbjct: 230506 ggcaaactttccgttctgca 230525
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>gb|AC095351.5| Homo sapiens X BAC RP11-359C4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 194296

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     aaatacatatatgtctacat 49
              ||||||||||||||||||||
Sbjct: 138843 aaatacatatatgtctacat 138824
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 217     actcttaccacatcctcagttcca 240
               |||||||||| |||||||||||||
Sbjct: 3102598 actcttaccatatcctcagttcca 3102575
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>gb|AC092671.2| Homo sapiens BAC clone RP11-598I5 from 4, complete sequence
          Length = 164229

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     aaatacatatatgtctacat 49
              ||||||||||||||||||||
Sbjct: 107767 aaatacatatatgtctacat 107786
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>gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, complete sequence
          Length = 186092

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     agaaaaagatgaaagataaa 116
              ||||||||||||||||||||
Sbjct: 130517 agaaaaagatgaaagataaa 130498
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>emb|BX248108.11| Zebrafish DNA sequence from clone CH211-221P4, complete sequence
          Length = 230610

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    aaagatgaaagataaaagaa 120
              ||||||||||||||||||||
Sbjct: 229931 aaagatgaaagataaaagaa 229912
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 74      taaaattgaaaattacacgtttca 97
               ||||||| ||||||||||||||||
Sbjct: 2734701 taaaattaaaaattacacgtttca 2734724
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>gb|AC026433.4|AC026433 Homo sapiens chromosome 5 clone CTD-2239K20, complete sequence
          Length = 96951

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    aaaaagatgaaagataaaag 118
             ||||||||||||||||||||
Sbjct: 59654 aaaaagatgaaagataaaag 59673
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>gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete sequence
          Length = 182627

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     aaatacatatatgtctacat 49
              ||||||||||||||||||||
Sbjct: 129387 aaatacatatatgtctacat 129368
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>gb|AC154281.2| Mus musculus BAC clone RP24-271P6 from chromosome 13, complete sequence
          Length = 182797

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   acttccttatctatcaattc 299
             ||||||||||||||||||||
Sbjct: 80830 acttccttatctatcaattc 80849
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 317     ggcaaactttccgttctgca 336
               ||||||||||||||||||||
Sbjct: 1160221 ggcaaactttccgttctgca 1160202
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>emb|BX784032.4| Zebrafish DNA sequence from clone CH211-87N12 in linkage group 18,
              complete sequence
          Length = 112053

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 97     agaaaaagatgaaagataaaagaa 120
              |||||||||||||| |||||||||
Sbjct: 111377 agaaaaagatgaaatataaaagaa 111400
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>gb|AC154199.2| Mus musculus BAC clone RP24-396N5 from 13, complete sequence
          Length = 120685

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   atctcaaggcagcttggtgc 540
             ||||||||||||||||||||
Sbjct: 36086 atctcaaggcagcttggtgc 36067
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>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence
          Length = 153206

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aaatacatatatgtctacat 49
             ||||||||||||||||||||
Sbjct: 71179 aaatacatatatgtctacat 71198
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 317     ggcaaactttccgttctgca 336
               ||||||||||||||||||||
Sbjct: 1177626 ggcaaactttccgttctgca 1177607
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>gb|AC113980.29| Mus musculus chromosome 5, clone RP24-63G23, complete sequence
          Length = 193657

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    gtcacaccaattctggaatg 427
              ||||||||||||||||||||
Sbjct: 170680 gtcacaccaattctggaatg 170699
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 317     ggcaaactttccgttctgca 336
               ||||||||||||||||||||
Sbjct: 1894884 ggcaaactttccgttctgca 1894903
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>dbj|AP003462.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-480C22, complete
             sequences
          Length = 190032

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   ccaccaaaagcattccactt 474
             ||||||||||||||||||||
Sbjct: 85191 ccaccaaaagcattccactt 85172
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>emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on chromosome 13, complete
             sequence
          Length = 225179

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   atctcaaggcagcttggtgc 540
             ||||||||||||||||||||
Sbjct: 64768 atctcaaggcagcttggtgc 64787
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>emb|CT027564.7| Mouse DNA sequence from clone RP24-293N14 on chromosome 16, complete
             sequence
          Length = 180784

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    acatatatgtctacattcttcaaa 57
             |||| |||||||||||||||||||
Sbjct: 23253 acatttatgtctacattcttcaaa 23276
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 74      taaaattgaaaattacacgtttca 97
               ||||||| ||||||||||||||||
Sbjct: 2743732 taaaattaaaaattacacgtttca 2743755
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>gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, complete sequence
          Length = 192938

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   aaagatgaaagataaaagaa 120
             ||||||||||||||||||||
Sbjct: 94485 aaagatgaaagataaaagaa 94504
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>gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome 16, complete sequence
          Length = 206740

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    acatatatgtctacattcttcaaa 57
             |||| |||||||||||||||||||
Sbjct: 22936 acatttatgtctacattcttcaaa 22913
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>emb|AL845449.4| Mouse DNA sequence from clone RP23-211M20 on chromosome 2, complete
              sequence
          Length = 226324

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 99     aaaaagatgaaagataaaagaaga 122
              |||||||| |||||||||||||||
Sbjct: 204712 aaaaagattaaagataaaagaaga 204689


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,071,851
Number of Sequences: 3902068
Number of extensions: 6071851
Number of successful extensions: 133293
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132960
Number of HSP's gapped (non-prelim): 332
length of query: 560
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 537
effective length of database: 17,143,297,704
effective search space: 9205950867048
effective search space used: 9205950867048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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