>RM08_YEAST (P22353) Mitochondrial 60S ribosomal protein L8 (YmL8)|
          Length = 237

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -1

Query: 679 QIQIHSAHSICKEVKLKVCNLPYDVMYKRGNTDYRIKRAIISSCNRRLQRRSTFQML 509
           + Q+H    + K+V LK  +LPYD   +   T   +K    SS  ++ ++ S++ M+
Sbjct: 178 EAQLHGEIMLIKQVLLKEMSLPYDEALENERTQALLKEVYSSSLPKKTKKPSSYVMV 234

>MATK_BROIN (Q9MUZ3) Maturase K (Intron maturase)|
          Length = 511

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 24/70 (34%), Positives = 32/70 (45%)
 Frame = +1

Query: 154 YVVRPPFCIFARKKDSSCLVVHKTTVLHPRKRLCRKLMQACFIFLPFSFSRQSKNKWIGC 333
           YV    F +   +K SSCL +  +     R    RK M+  +I  P  FSR  KN W   
Sbjct: 219 YVSEYEFFLLFLRKQSSCLPLASSGTFLERIHFSRK-MEHFWIMYP-GFSR--KNLWFFM 274

Query: 334 SMLLHYAPYR 363
             L+HY  Y+
Sbjct: 275 DPLIHYVRYQ 284

>GYRA_STRP8 (Q8P116) DNA gyrase subunit A (EC 5.99.1.3)|
          Length = 828

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +1

Query: 355 PYRVNKL*THQQLVKVPNFRAMLGFSA---HQSRQGDTLIFKL---PGSQLLLNGLIRAS 516
           PY VNK   H+ +V++   + + G +A     SR+G   + ++     + ++LN L + +
Sbjct: 262 PYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFVIEIRREASATVILNNLFKLT 321

Query: 517 GMSTS 531
            + T+
Sbjct: 322 SLQTN 326

>GYRA_STRP6 (Q5XC58) DNA gyrase subunit A (EC 5.99.1.3)|
          Length = 828

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +1

Query: 355 PYRVNKL*THQQLVKVPNFRAMLGFSA---HQSRQGDTLIFKL---PGSQLLLNGLIRAS 516
           PY VNK   H+ +V++   + + G +A     SR+G   + ++     + ++LN L + +
Sbjct: 262 PYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFVIEIRREASATVILNNLFKLT 321

Query: 517 GMSTS 531
            + T+
Sbjct: 322 SLQTN 326

>GYRA_STRP3 (Q8K7H2) DNA gyrase subunit A (EC 5.99.1.3)|
          Length = 828

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +1

Query: 355 PYRVNKL*THQQLVKVPNFRAMLGFSA---HQSRQGDTLIFKL---PGSQLLLNGLIRAS 516
           PY VNK   H+ +V++   + + G +A     SR+G   + ++     + ++LN L + +
Sbjct: 262 PYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFVIEIRREASATVILNNLFKLT 321

Query: 517 GMSTS 531
            + T+
Sbjct: 322 SLQTN 326

>GYRA_STRP1 (Q9L7Q5) DNA gyrase subunit A (EC 5.99.1.3)|
          Length = 828

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +1

Query: 355 PYRVNKL*THQQLVKVPNFRAMLGFSA---HQSRQGDTLIFKL---PGSQLLLNGLIRAS 516
           PY VNK   H+ +V++   + + G +A     SR+G   + ++     + ++LN L + +
Sbjct: 262 PYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFVIEIRREASATVILNNLFKLT 321

Query: 517 GMSTS 531
            + T+
Sbjct: 322 SLQTN 326


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,187,298
Number of Sequences: 219361
Number of extensions: 1928985
Number of successful extensions: 3871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3870
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)