ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28f24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC147925.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032N11 map near 50283S, complete sequence Length = 139217 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Minus Query: 664 aatgtatctgaatctgatatggtaaaatcatcacacctccatttctcaagttgctggt 721 ||||||||||| || || || || ||||||||||| ||||||||||| |||||||||| Sbjct: 4641 aatgtatctgagtcagaaatagtgaaatcatcacatctccatttctctagttgctggt 4584
>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0039A07 map near 50283S, complete sequence Length = 158158 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Minus Query: 664 aatgtatctgaatctgatatggtaaaatcatcacacctccatttctcaagttgctggt 721 ||||||||||| || || || || ||||||||||| ||||||||||| |||||||||| Sbjct: 135417 aatgtatctgagtcagaaatagtgaaatcatcacatctccatttctctagttgctggt 135360
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Minus Query: 664 aatgtatctgaatctgatatggtaaaatcatcacacctccatttctcaagttgctggt 721 ||||||||||| || || || || ||||||||||| ||||||||||| |||||||||| Sbjct: 14389805 aatgtatctgagtcagaaatagtgaaatcatcacatctccatttctctagttgctggt 14389748
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Minus Query: 664 aatgtatctgaatctgatatggtaaaatcatcacacctccatttctcaagttgctggt 721 ||||||||||| || || || || ||||||||||| ||||||||||| |||||||||| Sbjct: 14471807 aatgtatctgagtcagaaatagtgaaatcatcacatctccatttctctagttgctggt 14471750
>emb|BX927361.31| Zebrafish DNA sequence from clone CH211-121K8 in linkage group 9, complete sequence Length = 177986 Score = 48.1 bits (24), Expect = 0.041 Identities = 27/28 (96%) Strand = Plus / Minus Query: 37 tagctctcattttaatgtatttcatctt 64 ||||||||||||||| |||||||||||| Sbjct: 52350 tagctctcattttaaagtatttcatctt 52323
>emb|AL023285.1|HS474A14 Human DNA sequence from clone RP3-474A14 on chromosome 1q24.1-25.2 Contains the 5' end of the TNR gene for tenascin R (restrictin, janusin), complete sequence Length = 107352 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 266 tgcaagcttgcttcatctttct 287 |||||||||||||||||||||| Sbjct: 268 tgcaagcttgcttcatctttct 247
>emb|AJ488930.1|TAE488930 Triticum aestivum TAA1b gene promoter region Length = 1616 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Plus Query: 34 gtgtagctctcattttaatgtatttc 59 ||||||| |||||||||||||||||| Sbjct: 652 gtgtagcactcattttaatgtatttc 677
>emb|AL672290.16| Mouse DNA sequence from clone RP23-471M13 on chromosome X, complete sequence Length = 178341 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 ttcatctttcttcccttttcct 298 |||||||||||||||||||||| Sbjct: 113430 ttcatctttcttcccttttcct 113451
>gb|AC120180.19| Mus musculus chromosome 1, clone RP24-499I2, complete sequence Length = 183516 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 635 ttttacttccttacatattga 655 ||||||||||||||||||||| Sbjct: 59238 ttttacttccttacatattga 59218
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 31 tttgtgtagctctcattttaatgtatttc 59 ||||||||| || |||||||||||||||| Sbjct: 326640 tttgtgtagatcacattttaatgtatttc 326612
>gb|U40061.1| Caenorhabditis elegans cosmid ZK563, complete sequence Length = 29655 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 aatttttacaaaatctgtgaa 126 ||||||||||||||||||||| Sbjct: 21077 aatttttacaaaatctgtgaa 21057
>emb|AL136958.9| Human DNA sequence from clone RP11-147L20 on chromosome 13q14.11-14.2 Contains the ESD gene for esterase D/formylglutathione hydrolase, the 3' end of the HTR2A gene for 5-hydroxytryptamine (serotonin) receptor 2A, the 3' end of a variant of gene KIAA1016 and a CpG island, complete sequence Length = 106317 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 tttgtgtagctctcattttaatgta 55 ||||||||||||||||||| ||||| Sbjct: 95944 tttgtgtagctctcatttttatgta 95920
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 agctctcattttaatgtattt 58 ||||||||||||||||||||| Sbjct: 365655 agctctcattttaatgtattt 365675
>gb|AC016761.10| Homo sapiens BAC clone RP11-538A12 from 2, complete sequence Length = 159338 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 tcattttaatgtatttcatct 63 ||||||||||||||||||||| Sbjct: 111919 tcattttaatgtatttcatct 111939
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 34 gtgtagctctcattttaatgtatttcatc 62 ||||||||| ||| ||||||||||||||| Sbjct: 80277 gtgtagctcgcatgttaatgtatttcatc 80249
>gb|AC154781.2| Mus musculus BAC clone RP24-463K5 from 16, complete sequence Length = 173258 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 tttttaaaaattaaggcctat 154 ||||||||||||||||||||| Sbjct: 93583 tttttaaaaattaaggcctat 93563
>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete sequence Length = 132371 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 atcttgaagactaatacacatgta 83 ||||||||||||||| |||||||| Sbjct: 70716 atcttgaagactaattcacatgta 70739
>gb|AC111115.13| Mus musculus chromosome 5, clone RP23-213H20, complete sequence Length = 201694 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 tatttttaaaaattaaggcctata 155 |||||||||||||||| ||||||| Sbjct: 32025 tatttttaaaaattaaagcctata 32002
>gb|AC099645.11| Mus musculus chromosome 15, clone RP23-426G4, complete sequence Length = 208095 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 tcattttaatgtatttcatcttga 66 ||||||||||||||| |||||||| Sbjct: 76321 tcattttaatgtattgcatcttga 76344
>ref|NM_123503.2| Arabidopsis thaliana unknown protein AT5G41380 mRNA, complete cds Length = 1954 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaaagagtatttttaaaaat 144 |||||||||||||||||||| Sbjct: 1820 aaaagagtatttttaaaaat 1801
>gb|AY800647.1| Arabidopsis thaliana clone H0000001190 hypothetical protein (AT5G41380) mRNA, complete cds Length = 1983 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaaagagtatttttaaaaat 144 |||||||||||||||||||| Sbjct: 1820 aaaagagtatttttaaaaat 1801
>ref|NM_181789.1| Homo sapiens gliomedin (GLDN), mRNA Length = 4654 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tgaaaagagtatttttaaaa 142 |||||||||||||||||||| Sbjct: 3411 tgaaaagagtatttttaaaa 3392
>gb|AC129553.10| Mus musculus chromosome 5, clone RP24-351J24, complete sequence Length = 152414 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 tatttttaaaaattaaggcctata 155 |||||||||||||||| ||||||| Sbjct: 147269 tatttttaaaaattaaagcctata 147246
>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence Length = 378763 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ggcctccattttgcattttc 183 |||||||||||||||||||| Sbjct: 305676 ggcctccattttgcattttc 305657
>emb|AL023844.1|CEY48A6B Caenorhabditis elegans YAC Y48A6B, complete sequence Length = 75073 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tttttacaaaatctgtgaaa 127 |||||||||||||||||||| Sbjct: 27304 tttttacaaaatctgtgaaa 27285
>gb|DQ102708.1| Rattus norvegicus glutathione S-transferase class-Pi (Gst) gene, partial sequence Length = 2713 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 cttgcttcatctttcttccctttt 295 |||||||||| ||||||||||||| Sbjct: 2264 cttgcttcatttttcttccctttt 2287
>emb|AL450333.13| Human DNA sequence from clone RP11-25O6 on chromosome 6, complete sequence Length = 156964 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 40 ctctcattttaatgtatttcatcttgaa 67 ||||||||||||| |||||||| ||||| Sbjct: 97528 ctctcattttaatttatttcattttgaa 97501
>emb|AL392044.7| Human DNA sequence from clone RP11-195E11 on chromosome 9 Contains the 5' end of a novel gene (MGC21981), three novel genes and a CpG island, complete sequence Length = 167206 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 atctgtgaaaagagtatttt 137 |||||||||||||||||||| Sbjct: 69347 atctgtgaaaagagtatttt 69328
>emb|AL390791.15| Human DNA sequence from clone RP11-204A14 on chromosome 9, complete sequence Length = 177425 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gagtatttttaaaaattaag 148 |||||||||||||||||||| Sbjct: 95350 gagtatttttaaaaattaag 95369
>emb|AL360006.15| Human DNA sequence from clone RP11-528D17 on chromosome 1, complete sequence Length = 113420 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 aaagagtatttttaaaaatt 145 |||||||||||||||||||| Sbjct: 61626 aaagagtatttttaaaaatt 61645
>emb|AL357141.8| Human DNA sequence from clone RP11-702N8 on chromosome 6 Contains the FRK gene for fyn-related kinase (GTK, RAK) and a TPI1 (triosephosphate isomerase 1) pseudogene, complete sequence Length = 125184 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 catctttcttcccttttcct 298 |||||||||||||||||||| Sbjct: 80136 catctttcttcccttttcct 80155
>gb|AC095402.7| Rattus norvegicus 2 BAC CH230-7A22 (Children's Hospital Oakland Research Institute) complete sequence Length = 224026 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 tctgtgaaaagagtatttttaaaaatta 146 ||||| |||| ||||||||||||||||| Sbjct: 153916 tctgttaaaatagtatttttaaaaatta 153889
>emb|AL158069.16| Human DNA sequence from clone RP13-57D9 on chromosome Xq11.2-13.2 Contains the gene for TED protein (TED), the 5' end of the ED1 gene for ectodermal dysplasia 1, anhidrotic, two novel genes and three CpG islands, complete sequence Length = 186538 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 gaaaagagtatttttaaaaattaa 147 |||||||| ||||||||||||||| Sbjct: 89285 gaaaagagaatttttaaaaattaa 89308
>emb|AL139805.15| Human DNA sequence from clone RP3-323K23 on chromosome 6 Contains the 5' end of the ENPP1 gene for ectonucleotide pyrophosphatase/phosphodiesterase 1, a novel pseudogene and a pseudogene (KIAA0231), complete sequence Length = 34002 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaaagagtatttttaaaaat 144 |||||||||||||||||||| Sbjct: 2537 aaaagagtatttttaaaaat 2518
>emb|AL139812.11| Human DNA sequence from clone RP1-19N1 on chromosome Xq21.33-22.3 Contains the gene for a novel protein similar to chondroitin sulfate GalNAcT-2 (GALNACT-2), complete sequence Length = 144242 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 tcccttttccttctctagac 307 |||||||||||||||||||| Sbjct: 110266 tcccttttccttctctagac 110247
>gb|AC183605.3| Pan troglodytes BAC clone CH251-334E18 from chromosome 4, complete sequence Length = 191017 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 agagtatttttaaaaattaa 147 |||||||||||||||||||| Sbjct: 91660 agagtatttttaaaaattaa 91641
>gb|AC141020.2| Rattus norvegicus BAC CH230-497A18 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 168022 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 cttgcttcatctttcttccctttt 295 |||||||||| ||||||||||||| Sbjct: 162401 cttgcttcatttttcttccctttt 162424
>emb|BX511134.8| Zebrafish DNA sequence from clone CH211-134C9 in linkage group 1, complete sequence Length = 188290 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaaaagagtatttttaaaaa 143 |||||||||||||||||||| Sbjct: 83959 gaaaagagtatttttaaaaa 83940
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 catctttcttcccttttcct 298 |||||||||||||||||||| Sbjct: 7485601 catctttcttcccttttcct 7485620
>dbj|AK095128.1| Homo sapiens cDNA FLJ37809 fis, clone BRSSN2001758 Length = 1998 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tgaaaagagtatttttaaaa 142 |||||||||||||||||||| Sbjct: 833 tgaaaagagtatttttaaaa 814
>gb|AC097268.10| Pan troglodytes BAC RP43-43O8 (Roswell Park Cancer Institute) complete sequence Length = 241278 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaaagagtatttttaaaaat 144 |||||||||||||||||||| Sbjct: 25037 aaaagagtatttttaaaaat 25018
>emb|BX601644.6| Zebrafish DNA sequence from clone DKEY-21O13 in linkage group 9, complete sequence Length = 217065 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 atttttacaaaatctgtgaa 126 |||||||||||||||||||| Sbjct: 93586 atttttacaaaatctgtgaa 93605
>gb|AC021785.10| Homo sapiens chromosome , clone RP11-21C17, complete sequence Length = 156232 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 tatttttaaaaattaaggcctata 155 |||||||||||||||||| ||||| Sbjct: 52744 tatttttaaaaattaaggactata 52721
>gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 72022 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 367 aacaagctatagacacatcaacaa 390 |||||||||||||||||| ||||| Sbjct: 17573 aacaagctatagacacattaacaa 17596
>gb|AC097504.3| Homo sapiens BAC clone RP11-362F19 from 4, complete sequence Length = 186215 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 tcttcccttttccttctcta 304 |||||||||||||||||||| Sbjct: 44540 tcttcccttttccttctcta 44521
>gb|AC104806.3| Homo sapiens BAC clone RP11-584P21 from 4, complete sequence Length = 147777 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 aaagagtatttttaaaaatt 145 |||||||||||||||||||| Sbjct: 10963 aaagagtatttttaaaaatt 10944
>gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complete sequence Length = 162015 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ttcatctttcttcccttttc 296 |||||||||||||||||||| Sbjct: 139177 ttcatctttcttcccttttc 139196
>gb|AC147659.5| Pan troglodytes BAC clone CH251-425E12 from chromosome y, complete sequence Length = 168988 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 catctttcttcccttttcct 298 |||||||||||||||||||| Sbjct: 64748 catctttcttcccttttcct 64767
>emb|CR391445.1| Gallus gallus finished cDNA, clone ChEST654p15 Length = 939 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 tcatctttcttcccttttccttct 301 ||||||||||||||||||| |||| Sbjct: 613 tcatctttcttcccttttctttct 636
>gb|AC157516.2| Mus musculus BAC clone RP24-279F18 from chromosome 9, complete sequence Length = 175493 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 aatgtatttcatcttgaagactaa 73 ||||| |||||||||||||||||| Sbjct: 43230 aatgtctttcatcttgaagactaa 43253
>gb|AC066613.7|AC066613 Homo sapiens chromosome 15 clone RP11-707P17 map 15q21.2, complete sequence Length = 169077 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tgaaaagagtatttttaaaa 142 |||||||||||||||||||| Sbjct: 37768 tgaaaagagtatttttaaaa 37749
>ref|NM_001029376.1| Caenorhabditis elegans abnormal DAuer Formation family member (daf-12) (daf-12) mRNA, complete cds Length = 3683 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 693 atcacacctccatttctcaa 712 |||||||||||||||||||| Sbjct: 3338 atcacacctccatttctcaa 3357
>gb|AC153435.6| Mus musculus 6 BAC RP23-112L19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 212041 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 acattttgcctctaggtatg 102 |||||||||||||||||||| Sbjct: 166766 acattttgcctctaggtatg 166747
>gb|AC159150.5| Mus musculus BAC RP23-339M5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205775 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 acattttgcctctaggtatg 102 |||||||||||||||||||| Sbjct: 194439 acattttgcctctaggtatg 194458
>gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108K3 map 15q21, complete sequence Length = 144714 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tgaaaagagtatttttaaaa 142 |||||||||||||||||||| Sbjct: 136522 tgaaaagagtatttttaaaa 136503
>dbj|AB071079.1| Macaca fascicularis testis cDNA clone:QtsA-16975, similar to human hypothetical protein FLJ23577, mRNA, NM_024867 Length = 3926 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 ttcatctttcttcccttttccttc 300 |||| ||||||||||||||||||| Sbjct: 2916 ttcacctttcttcccttttccttc 2893
>gb|AC113303.16| Mus musculus chromosome 5, clone RP23-431E5, complete sequence Length = 221109 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 tcatctttcttcccttttccttct 301 |||||||||| ||||||||||||| Sbjct: 130336 tcatctttctccccttttccttct 130313
>gb|AC139365.3| Homo sapiens chromosome 8, clone RP11-643N23, complete sequence Length = 185549 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tttttacaaaatctgtgaaa 127 |||||||||||||||||||| Sbjct: 177527 tttttacaaaatctgtgaaa 177546
>gb|AC137719.5| Homo sapiens chromosome 8, clone RP11-260I22, complete sequence Length = 171164 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tttttacaaaatctgtgaaa 127 |||||||||||||||||||| Sbjct: 38329 tttttacaaaatctgtgaaa 38348
>gb|AF165139.6| Homo sapiens chromosome 9 clone RP11-44L18 map unmapped, complete sequence Length = 153942 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 atctgtgaaaagagtatttt 137 |||||||||||||||||||| Sbjct: 33658 atctgtgaaaagagtatttt 33677
>gb|AC007956.5|AC007956 Homo sapiens chromosome 14 clones CTD-3211F8 and RP11-173A8 containing KIAA0317 gene, complete cds; and unknown gene, complete sequence Length = 233738 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 698 acctccatttctcaagttgc 717 |||||||||||||||||||| Sbjct: 227205 acctccatttctcaagttgc 227224
>dbj|AB006707.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYC6 Length = 82315 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 aaaagagtatttttaaaaat 144 |||||||||||||||||||| Sbjct: 42226 aaaagagtatttttaaaaat 42245
>emb|AJ331909.1|HSA331909 Homo sapiens genomic sequence surrounding NotI site, clone NL3-CD16R Length = 747 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gtatttttaaaaattaaggc 150 |||||||||||||||||||| Sbjct: 658 gtatttttaaaaattaaggc 677
>gb|AC155891.2| Medicago truncatula chromosome 2 BAC clone mth2-4g10, complete sequence Length = 148303 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tttgatgcggtagtctgtgt 588 |||||||||||||||||||| Sbjct: 83179 tttgatgcggtagtctgtgt 83160
>gb|AF136240.1|AF136240 Caenorhabditis elegans DAF-12 B (daf-12) mRNA, complete cds Length = 2192 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 693 atcacacctccatttctcaa 712 |||||||||||||||||||| Sbjct: 1847 atcacacctccatttctcaa 1866
>gb|AF136239.1|AF136239 Caenorhabditis elegans DAF-12 A2 (daf-12) mRNA, complete cds Length = 3480 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 693 atcacacctccatttctcaa 712 |||||||||||||||||||| Sbjct: 3135 atcacacctccatttctcaa 3154
>gb|AF136238.1|AF136238 Caenorhabditis elegans DAF-12 A1 (daf-12) mRNA, complete cds Length = 3683 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 693 atcacacctccatttctcaa 712 |||||||||||||||||||| Sbjct: 3338 atcacacctccatttctcaa 3357
>emb|BX538105.1|HSM806296 Homo sapiens mRNA; cDNA DKFZp686J18145 (from clone DKFZp686J18145); complete cds Length = 4654 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tgaaaagagtatttttaaaa 142 |||||||||||||||||||| Sbjct: 3411 tgaaaagagtatttttaaaa 3392
>gb|CP000188.1| Drosophila melanogaster genomic scaffold 211000022279977 Length = 252652 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ttttaaaaattaaggcctat 154 |||||||||||||||||||| Sbjct: 135064 ttttaaaaattaaggcctat 135045
>emb|Z50857.1|CEF11A1 Caenorhabditis elegans Cosmid F11A1, complete sequence Length = 39353 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 693 atcacacctccatttctcaa 712 |||||||||||||||||||| Sbjct: 38038 atcacacctccatttctcaa 38057
>gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone rp23-117o7, complete sequence Length = 209737 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 agagtatttttaaaaattaa 147 |||||||||||||||||||| Sbjct: 50979 agagtatttttaaaaattaa 50998
>gb|U81834.1|HSU81834 Human cosmid LL12NC01-95H4, ETV6 gene, exon 2 and partial cds Length = 36558 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 aacaagctatagacacatcaacaa 390 |||||||||||||||||| ||||| Sbjct: 19051 aacaagctatagacacattaacaa 19028
>dbj|AP004968.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43O24, TM0145, complete sequence Length = 134976 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 cattttaatgtatttcatct 63 |||||||||||||||||||| Sbjct: 115337 cattttaatgtatttcatct 115356
>emb|AL672095.6| Mouse DNA sequence from clone RP23-387N22 on chromosome X, complete sequence Length = 165970 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 tgaaaagagtatttttaaaaatta 146 |||||| ||||||||||||||||| Sbjct: 125650 tgaaaaaagtatttttaaaaatta 125673
>emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chromosome 4, complete sequence Length = 194554 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 agagtatttttaaaaattaa 147 |||||||||||||||||||| Sbjct: 55123 agagtatttttaaaaattaa 55104
>gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complete sequence Length = 140915 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 aaaagagtatttttaaaaat 144 |||||||||||||||||||| Sbjct: 7076 aaaagagtatttttaaaaat 7095
>gb|AC164552.4| Mus musculus BAC clone RP23-352M7 from chromosome 9, complete sequence Length = 169465 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 aatgtatttcatcttgaagactaa 73 ||||| |||||||||||||||||| Sbjct: 151176 aatgtctttcatcttgaagactaa 151199 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,541,237 Number of Sequences: 3902068 Number of extensions: 8541237 Number of successful extensions: 220594 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 220222 Number of HSP's gapped (non-prelim): 372 length of query: 724 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 701 effective length of database: 17,143,297,704 effective search space: 12017451690504 effective search space used: 12017451690504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
