ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete se... 44 0.044
2ref|XM_751932.1| Ustilago maydis 521 hypothetical protein (UM008... 42 0.17
3emb|AL928772.8| Mouse DNA sequence from clone RP23-247I15 on chr... 40 0.68
4gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, com... 40 0.68
5gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosom... 40 0.68
6ref|NM_196683.1| Oryza sativa (japonica cultivar-group) putative... 38 2.7
7gb|AC155955.2| Xenopus tropicalis clone CH216-151P9, complete se... 38 2.7
8gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome... 38 2.7
9gb|AC155952.2| Xenopus tropicalis clone CH216-120G20, complete s... 38 2.7
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.7
11emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 2.7
12dbj|AK065583.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 2.7
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 2.7

>gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete sequence
          Length = 44699

 Score = 44.1 bits (22), Expect = 0.044
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 9     tctaataatcggagaaaaactg 30
             ||||||||||||||||||||||
Sbjct: 18426 tctaataatcggagaaaaactg 18405



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>ref|XM_751932.1| Ustilago maydis 521 hypothetical protein (UM00878.1) partial mRNA
          Length = 2481

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 38  ctgcaccggtggtgctgcttg 58
           |||||||||||||||||||||
Sbjct: 964 ctgcaccggtggtgctgcttg 944



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>emb|AL928772.8| Mouse DNA sequence from clone RP23-247I15 on chromosome 4 Contains the 3'
              end of a novel gene and a novel gene, complete sequence
          Length = 174731

 Score = 40.1 bits (20), Expect = 0.68
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     gaaaaactgaagctgcctgc 41
              ||||||||||||||||||||
Sbjct: 146098 gaaaaactgaagctgcctgc 146117



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>gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, complete sequence
          Length = 216264

 Score = 40.1 bits (20), Expect = 0.68
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     gaaaaactgaagctgcctgc 41
              ||||||||||||||||||||
Sbjct: 168486 gaaaaactgaagctgcctgc 168467



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>gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosome 17, complete
             sequence
          Length = 132103

 Score = 40.1 bits (20), Expect = 0.68
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    agaaaaactgaagctgcctg 40
             ||||||||||||||||||||
Sbjct: 20585 agaaaaactgaagctgcctg 20604



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>ref|NM_196683.1| Oryza sativa (japonica cultivar-group) putative anter-specific
          proline-rich protein (OSJNBb0016G17.12), mRNA
          Length = 1077

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 37 cctgcaccggtggtgctgc 55
          |||||||||||||||||||
Sbjct: 48 cctgcaccggtggtgctgc 66



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>gb|AC155955.2| Xenopus tropicalis clone CH216-151P9, complete sequence
          Length = 166977

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     ggtgctgcttgacttgcat 66
              |||||||||||||||||||
Sbjct: 141703 ggtgctgcttgacttgcat 141685



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>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17,
             complete sequence
          Length = 141041

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    cctgcaccggtggtgctgc 55
             |||||||||||||||||||
Sbjct: 76349 cctgcaccggtggtgctgc 76331



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>gb|AC155952.2| Xenopus tropicalis clone CH216-120G20, complete sequence
          Length = 169117

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    ggtgctgcttgacttgcat 66
             |||||||||||||||||||
Sbjct: 94839 ggtgctgcttgacttgcat 94821



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 37       cctgcaccggtggtgctgc 55
                |||||||||||||||||||
Sbjct: 15222650 cctgcaccggtggtgctgc 15222632



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 37      cctgcaccggtggtgctgc 55
               |||||||||||||||||||
Sbjct: 4437289 cctgcaccggtggtgctgc 4437271



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>dbj|AK065583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034G20, full
           insert sequence
          Length = 1505

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  cctgcaccggtggtgctgc 55
           |||||||||||||||||||
Sbjct: 92  cctgcaccggtggtgctgc 110



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 37       cctgcaccggtggtgctgc 55
                |||||||||||||||||||
Sbjct: 15230891 cctgcaccggtggtgctgc 15230873


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 497,764
Number of Sequences: 3902068
Number of extensions: 497764
Number of successful extensions: 39348
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39247
Number of HSP's gapped (non-prelim): 101
length of query: 69
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 48
effective length of database: 17,151,101,840
effective search space: 823252888320
effective search space used: 823252888320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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