ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28f20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC015884.15| Homo sapiens chromosome 17, clone RP11-216P6, co... 42 0.62
2gb|AC122684.3| Homo sapiens 12 BAC RP11-280I23 (Roswell Park Can... 42 0.62
3gb|AC016292.26| Homo sapiens chromosome 17, clone RP11-22G12, co... 42 0.62
4gb|AC107911.21| Homo sapiens chromosome 17, clone CTD-2507J6, co... 42 0.62
5gb|BC084461.1| Xenopus tropicalis dynamin 2, mRNA (cDNA clone MG... 40 2.5
6ref|NM_001011076.1| Xenopus tropicalis dynamin 2 (dnm2), mRNA 40 2.5
7emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4,... 40 2.5
8gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4... 40 2.5
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
10gb|AC093738.2| Homo sapiens BAC clone RP11-21M18 from 2, complet... 40 2.5
11emb|BX649262.4| Zebrafish DNA sequence from clone DKEY-174I8 in ... 40 2.5
12emb|BX324180.4| Zebrafish DNA sequence from clone CH211-134O13 i... 40 2.5
13emb|AL953867.18| Zebrafish DNA sequence from clone CH211-258L4 i... 40 2.5
14gb|AC134474.4| Mus musculus BAC clone RP23-234N16 from chromosom... 38 9.7
15ref|XM_526614.1| PREDICTED: Pan troglodytes latrophilin 3 (LOC47... 38 9.7
16gb|AC124779.4| Mus musculus BAC clone RP23-100O18 from chromosom... 38 9.7
17gb|AY157024.2| Homo sapiens peroxisome proliferative activated r... 38 9.7
18ref|NM_015236.3| Homo sapiens latrophilin 3 (LPHN3), mRNA 38 9.7
19ref|XM_539285.2| PREDICTED: Canis familiaris similar to latrophi... 38 9.7
20gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-1... 38 9.7
21gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA... 38 9.7
22gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar N... 38 9.7
23emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in l... 38 9.7
24emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in l... 38 9.7
25emb|CR392013.8| Zebrafish DNA sequence from clone DKEY-170H15 in... 38 9.7
26gb|AC015656.9| Homo sapiens, clone RP11-81K2, complete sequence 38 9.7
27gb|AY057021.1| Pitta guajara recombination activating protein 1 ... 38 9.7
28gb|AC091180.20| Homo sapiens chromosome 17, clone RP11-1079K10, ... 38 9.7
29ref|XM_937110.1| PREDICTED: Homo sapiens similar to Latrophilin-... 38 9.7
30dbj|AK164720.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 38 9.7
31dbj|AB179391.1| Macaca fascicularis testis cDNA clone: QtsA-1906... 38 9.7
32gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete... 38 9.7
33dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
34gb|AC022317.8| Homo sapiens BAC clone RP11-104A24 from 4, comple... 38 9.7
35gb|AY443319.1| Pitta sordida recombination activating protein 1 ... 38 9.7
36gb|AY443306.1| Neodrepanis coruscans recombination activating pr... 38 9.7
37gb|AF002223.2| Homo sapiens chromosome X multiple clones map q28... 38 9.7
38gb|AF307080.1|AF307080 Homo sapiens lectomedin-3 (LEC3) mRNA, co... 38 9.7
39gb|AC135037.2| Homo sapiens 3 BAC RP11-411M4 (Roswell Park Cance... 38 9.7
40gb|AC007511.8|AC007511 Homo sapiens, clone RP11-84A1, complete s... 38 9.7
41dbj|AP005773.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
42ref|NM_181033.1| Bos taurus latrophilin 3 (LEC3), mRNA 38 9.7
43gb|AF111096.1|AF111096 Bos taurus latrophilin 3 splice variant b... 38 9.7
44gb|AF111095.1|AF111095 Bos taurus latrophilin 3 splice variant b... 38 9.7
45gb|AF111094.1|AF111094 Bos taurus latrophilin 3 splice variant b... 38 9.7
46gb|AF111093.1|AF111093 Bos taurus latrophilin 3 splice variant b... 38 9.7
47gb|AF111092.1|AF111092 Bos taurus latrophilin 3 splice variant b... 38 9.7
48gb|AF111091.1|AF111091 Bos taurus latrophilin 3 splice variant b... 38 9.7
49gb|AF111090.1|AF111090 Bos taurus latrophilin 3 splice variant a... 38 9.7
50gb|AF111089.1|AF111089 Bos taurus latrophilin 3 splice variant a... 38 9.7
51gb|AF111088.1|AF111088 Bos taurus latrophilin 3 splice variant a... 38 9.7
52gb|AF111087.1|AF111087 Bos taurus latrophilin 3 splice variant a... 38 9.7
53gb|AF111086.1|AF111086 Bos taurus latrophilin 3 splice variant a... 38 9.7
54gb|AF111085.1|AF111085 Bos taurus latrophilin 3 splice variant a... 38 9.7
55emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chr... 38 9.7
56gb|AC090947.2| Homo sapiens chromosome 3 clone RP11-30G23 map 3p... 38 9.7
57gb|AC093174.2| Homo sapiens chromosome 3 clone RP11-167M22 map 3... 38 9.7
58dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochond... 38 9.7
59dbj|AB018311.1| Homo sapiens mRNA for KIAA0768 protein, partial cds 38 9.7 
>gb|AC015884.15| Homo sapiens chromosome 17, clone RP11-216P6, complete sequence
          Length = 207661

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    aacgagcacacagaaaggatg 123
              |||||||||||||||||||||
Sbjct: 204160 aacgagcacacagaaaggatg 204180
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>gb|AC122684.3| Homo sapiens 12 BAC RP11-280I23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 104968

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 9     gacaaagctttatgaaaagctagag 33
             ||||||||| |||||||||||||||
Sbjct: 76200 gacaaagctgtatgaaaagctagag 76224
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>gb|AC016292.26| Homo sapiens chromosome 17, clone RP11-22G12, complete sequence
          Length = 104435

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 103   aacgagcacacagaaaggatg 123
             |||||||||||||||||||||
Sbjct: 66906 aacgagcacacagaaaggatg 66886
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>gb|AC107911.21| Homo sapiens chromosome 17, clone CTD-2507J6, complete sequence
          Length = 88883

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   aacgagcacacagaaaggatg 123
             |||||||||||||||||||||
Sbjct: 40526 aacgagcacacagaaaggatg 40546
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>gb|BC084461.1| Xenopus tropicalis dynamin 2, mRNA (cDNA clone MGC:89282
            IMAGE:6977513), complete cds
          Length = 2932

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  gaaaaccaaagcactgctgc 144
            ||||||||||||||||||||
Sbjct: 1055 gaaaaccaaagcactgctgc 1074
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>ref|NM_001011076.1| Xenopus tropicalis dynamin 2 (dnm2), mRNA
          Length = 2932

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  gaaaaccaaagcactgctgc 144
            ||||||||||||||||||||
Sbjct: 1055 gaaaaccaaagcactgctgc 1074
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>emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08,
              complete sequence
          Length = 142814

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 116    aaaggatgtgaaaaccaaagcact 139
              |||||||||||| |||||||||||
Sbjct: 108723 aaaggatgtgaagaccaaagcact 108746
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>gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4, complete sequence
          Length = 160858

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   tgcaaacatgcactgaaaca 175
             ||||||||||||||||||||
Sbjct: 71429 tgcaaacatgcactgaaaca 71410
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 116      aaaggatgtgaaaaccaaagcact 139
                |||||||||||| |||||||||||
Sbjct: 11100068 aaaggatgtgaagaccaaagcact 11100091
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>gb|AC093738.2| Homo sapiens BAC clone RP11-21M18 from 2, complete sequence
          Length = 174891

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    cacacagaaaggatgtgaaa 128
              ||||||||||||||||||||
Sbjct: 148557 cacacagaaaggatgtgaaa 148538
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>emb|BX649262.4| Zebrafish DNA sequence from clone DKEY-174I8 in linkage group 20,
             complete sequence
          Length = 55019

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 145   tacggtatggatgcaaacatgcactgaa 172
             ||||||| |||||||||||| |||||||
Sbjct: 43114 tacggtagggatgcaaacatccactgaa 43141
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>emb|BX324180.4| Zebrafish DNA sequence from clone CH211-134O13 in linkage group 22,
              complete sequence
          Length = 136724

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 145    tacggtatggatgcaaacatgcactgaa 172
              ||||||| |||||||||||| |||||||
Sbjct: 124555 tacggtagggatgcaaacatccactgaa 124582
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>emb|AL953867.18| Zebrafish DNA sequence from clone CH211-258L4 in linkage group 22,
             complete sequence
          Length = 177575

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ggatgcaaacatgcactgaa 172
             ||||||||||||||||||||
Sbjct: 52270 ggatgcaaacatgcactgaa 52251
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>gb|AC134474.4| Mus musculus BAC clone RP23-234N16 from chromosome 6, complete sequence
          Length = 171491

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 112    acagaaaggatgtgaaaac 130
              |||||||||||||||||||
Sbjct: 155800 acagaaaggatgtgaaaac 155818
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>ref|XM_526614.1| PREDICTED: Pan troglodytes latrophilin 3 (LOC471232), mRNA
          Length = 2565

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 2241 aaccaacgagcacacagaa 2259
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>gb|AC124779.4| Mus musculus BAC clone RP23-100O18 from chromosome 6, complete sequence
          Length = 197482

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 112   acagaaaggatgtgaaaac 130
             |||||||||||||||||||
Sbjct: 20652 acagaaaggatgtgaaaac 20670
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>gb|AY157024.2| Homo sapiens peroxisome proliferative activated receptor gamma (PPARG)
             gene, complete cds
          Length = 148828

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   aacgagcacacagaaagga 121
             |||||||||||||||||||
Sbjct: 47843 aacgagcacacagaaagga 47825
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>ref|NM_015236.3| Homo sapiens latrophilin 3 (LPHN3), mRNA
          Length = 6193

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4311 aaccaacgagcacacagaa 4329
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>ref|XM_539285.2| PREDICTED: Canis familiaris similar to latrophilin 3 (LOC482166),
            mRNA
          Length = 5319

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4221 aaccaacgagcacacagaa 4239
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>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion,
              complete genome
          Length = 491515

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     tgatttcactggggttccc 52
              |||||||||||||||||||
Sbjct: 329054 tgatttcactggggttccc 329036
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>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion,
              complete genome
          Length = 490673

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     tgatttcactggggttccc 52
              |||||||||||||||||||
Sbjct: 328244 tgatttcactggggttccc 328226
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>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion,
              complete genome
          Length = 490669

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     tgatttcactggggttccc 52
              |||||||||||||||||||
Sbjct: 328241 tgatttcactggggttccc 328223
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>emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in linkage group 25,
             complete sequence
          Length = 233401

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 28/30 (93%), Gaps = 2/30 (6%)
 Strand = Plus / Minus

                                           
Query: 9     gacaaagctttatgaaaagctagagtgatt 38
             |||||||||||||||||  |||||||||||
Sbjct: 95662 gacaaagctttatgaaa--ctagagtgatt 95635
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>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25,
             complete sequence
          Length = 216800

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 28/30 (93%), Gaps = 2/30 (6%)
 Strand = Plus / Plus

                                           
Query: 9     gacaaagctttatgaaaagctagagtgatt 38
             |||||||||||||||||  |||||||||||
Sbjct: 14115 gacaaagctttatgaaa--ctagagtgatt 14142
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>emb|CR392013.8| Zebrafish DNA sequence from clone DKEY-170H15 in linkage group 5,
             complete sequence
          Length = 187191

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 150   tatggatgcaaacatgcactgaa 172
             |||||||| ||||||||||||||
Sbjct: 25694 tatggatgaaaacatgcactgaa 25672
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>gb|AC015656.9| Homo sapiens, clone RP11-81K2, complete sequence
          Length = 147775

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     tttcactggggttcccaga 55
              |||||||||||||||||||
Sbjct: 101487 tttcactggggttcccaga 101469
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>gb|AY057021.1| Pitta guajara recombination activating protein 1 (RAG-1) gene,
           partial cds
          Length = 2872

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 34  tgatttcactggggttcccagat 56
           |||||||||||||||| ||||||
Sbjct: 931 tgatttcactggggttaccagat 909
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>gb|AC091180.20| Homo sapiens chromosome 17, clone RP11-1079K10, complete sequence
          Length = 183690

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     tttcactggggttcccaga 55
              |||||||||||||||||||
Sbjct: 115673 tttcactggggttcccaga 115691
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>ref|XM_937110.1| PREDICTED: Homo sapiens similar to Latrophilin-3 precursor
           (Calcium-independent alpha-latrotoxin receptor 3)
           (Lectomedin-3) (LOC653950), mRNA
          Length = 555

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 99  aaccaacgagcacacagaa 117
           |||||||||||||||||||
Sbjct: 231 aaccaacgagcacacagaa 249
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>dbj|AK164720.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
            library, clone:D630035N21 product:unclassifiable, full
            insert sequence
          Length = 4834

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 112  acagaaaggatgtgaaaac 130
            |||||||||||||||||||
Sbjct: 2844 acagaaaggatgtgaaaac 2826
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>dbj|AB179391.1| Macaca fascicularis testis cDNA clone: QtsA-19065, similar to human
           latrophilin 3 (LPHN3), mRNA, RefSeq: NM_015236.1
          Length = 1648

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 99  aaccaacgagcacacagaa 117
           |||||||||||||||||||
Sbjct: 366 aaccaacgagcacacagaa 384
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>gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete sequence
          Length = 168829

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 177   aaggaagcctgcttgctca 195
             |||||||||||||||||||
Sbjct: 62812 aaggaagcctgcttgctca 62830
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 95       ttacaaccaacgagcacac 113
                |||||||||||||||||||
Sbjct: 18428673 ttacaaccaacgagcacac 18428655
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>gb|AC022317.8| Homo sapiens BAC clone RP11-104A24 from 4, complete sequence
          Length = 175020

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 56     ttacagtgacatacatgaa 74
              |||||||||||||||||||
Sbjct: 142289 ttacagtgacatacatgaa 142307
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>gb|AY443319.1| Pitta sordida recombination activating protein 1 (RAG1) gene,
           partial cds
          Length = 2872

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 34  tgatttcactggggttcccagat 56
           |||||||||||||||| ||||||
Sbjct: 931 tgatttcactggggttaccagat 909
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>gb|AY443306.1| Neodrepanis coruscans recombination activating protein 1 (RAG1)
           gene, partial cds
          Length = 2872

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 34  tgatttcactggggttcccagat 56
           |||||||||||||||| ||||||
Sbjct: 931 tgatttcactggggttaccagat 909
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>gb|AF002223.2| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 209932

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     tgaaaagctagagtgattt 39
              |||||||||||||||||||
Sbjct: 116568 tgaaaagctagagtgattt 116586
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>gb|AF307080.1|AF307080 Homo sapiens lectomedin-3 (LEC3) mRNA, complete cds
          Length = 6533

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4650 aaccaacgagcacacagaa 4668
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>gb|AC135037.2| Homo sapiens 3 BAC RP11-411M4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109292

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 154   gatgcaaacatgcactgaa 172
             |||||||||||||||||||
Sbjct: 63761 gatgcaaacatgcactgaa 63743
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>gb|AC007511.8|AC007511 Homo sapiens, clone RP11-84A1, complete sequence
          Length = 168822

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 99     aaccaacgagcacacagaa 117
              |||||||||||||||||||
Sbjct: 109775 aaccaacgagcacacagaa 109757
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>dbj|AP005773.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085C03
          Length = 188905

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    ttacaaccaacgagcacac 113
             |||||||||||||||||||
Sbjct: 11556 ttacaaccaacgagcacac 11538
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>ref|NM_181033.1| Bos taurus latrophilin 3 (LEC3), mRNA
          Length = 5220

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4582 aaccaacgagcacacagaa 4600
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>gb|AF111096.1|AF111096 Bos taurus latrophilin 3 splice variant bbbh mRNA, complete cds
          Length = 5272

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4634 aaccaacgagcacacagaa 4652
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>gb|AF111095.1|AF111095 Bos taurus latrophilin 3 splice variant bbbg mRNA, complete cds
          Length = 5143

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4505 aaccaacgagcacacagaa 4523
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>gb|AF111094.1|AF111094 Bos taurus latrophilin 3 splice variant bbbf mRNA, complete cds
          Length = 5220

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4582 aaccaacgagcacacagaa 4600
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>gb|AF111093.1|AF111093 Bos taurus latrophilin 3 splice variant bbah mRNA, complete cds
          Length = 5245

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4607 aaccaacgagcacacagaa 4625
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>gb|AF111092.1|AF111092 Bos taurus latrophilin 3 splice variant bbag mRNA, complete cds
          Length = 5116

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4478 aaccaacgagcacacagaa 4496
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>gb|AF111091.1|AF111091 Bos taurus latrophilin 3 splice variant bbaf mRNA, complete cds
          Length = 5193

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4555 aaccaacgagcacacagaa 4573
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>gb|AF111090.1|AF111090 Bos taurus latrophilin 3 splice variant abbh mRNA, complete cds
          Length = 5068

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4430 aaccaacgagcacacagaa 4448
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>gb|AF111089.1|AF111089 Bos taurus latrophilin 3 splice variant abbg mRNA, complete cds
          Length = 4939

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4301 aaccaacgagcacacagaa 4319
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>gb|AF111088.1|AF111088 Bos taurus latrophilin 3 splice variant abbf mRNA, complete cds
          Length = 5016

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4378 aaccaacgagcacacagaa 4396
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>gb|AF111087.1|AF111087 Bos taurus latrophilin 3 splice variant abah mRNA, complete cds
          Length = 5041

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4403 aaccaacgagcacacagaa 4421
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>gb|AF111086.1|AF111086 Bos taurus latrophilin 3 splice variant abag mRNA, complete cds
          Length = 4912

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4274 aaccaacgagcacacagaa 4292
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>gb|AF111085.1|AF111085 Bos taurus latrophilin 3 splice variant abaf mRNA, complete cds
          Length = 4989

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 4351 aaccaacgagcacacagaa 4369
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>emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chromosome 4, complete
             sequence
          Length = 163961

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 123   gtgaaaaccaaagcactgc 141
             |||||||||||||||||||
Sbjct: 29839 gtgaaaaccaaagcactgc 29857
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>gb|AC090947.2| Homo sapiens chromosome 3 clone RP11-30G23 map 3p, complete sequence
          Length = 166049

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 103    aacgagcacacagaaagga 121
              |||||||||||||||||||
Sbjct: 163039 aacgagcacacagaaagga 163057
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>gb|AC093174.2| Homo sapiens chromosome 3 clone RP11-167M22 map 3p, complete sequence
          Length = 135675

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   aacgagcacacagaaagga 121
             |||||||||||||||||||
Sbjct: 63948 aacgagcacacagaaagga 63930
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>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
          Length = 490520

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     tgatttcactggggttccc 52
              |||||||||||||||||||
Sbjct: 328098 tgatttcactggggttccc 328080
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>dbj|AB018311.1| Homo sapiens mRNA for KIAA0768 protein, partial cds
          Length = 4150

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   aaccaacgagcacacagaa 117
            |||||||||||||||||||
Sbjct: 2296 aaccaacgagcacacagaa 2314


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,549,155
Number of Sequences: 3902068
Number of extensions: 1549155
Number of successful extensions: 103399
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 103263
Number of HSP's gapped (non-prelim): 138
length of query: 196
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 174
effective length of database: 17,147,199,772
effective search space: 2983612760328
effective search space used: 2983612760328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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