ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF005993.1|AF005993 Triticum aestivum 70 kDa heat shock prote... 90 2e-15
2gb|AC104606.6| Drosophila melanogaster X BAC RP98-26L11 (Roswell... 38 6.2
3ref|XM_623399.1| PREDICTED: Apis mellifera similar to ENSANGP000... 38 6.2
4ref|XM_392052.2| PREDICTED: Apis mellifera similar to ENSANGP000... 38 6.2
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
6dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 38 6.2
7dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
8gb|AE003441.3| Drosophila melanogaster chromosome X, section 25 ... 38 6.2

>gb|AF005993.1|AF005993 Triticum aestivum 70 kDa heat shock protein (TaHSP70d) mRNA, complete
            cds
          Length = 2311

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                        
Query: 52   actccatccaaccactattactacttnctgctacatgacacgacgacaaacgactgacac 111
            |||||||| ||| |||| |||||||| | |||| ||||||| |||||| |||||||||||
Sbjct: 2212 actccatcgaacgactactactacttccagctagatgacacaacgacagacgactgacac 2153

                                
Query: 112  caccgagcagcatccaaagg 131
            |||||||| |||||||||||
Sbjct: 2152 caccgagcggcatccaaagg 2133



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>gb|AC104606.6| Drosophila melanogaster X BAC RP98-26L11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 183105

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 84     acatgacacgacgacaaacgact 106
              |||||||| ||||||||||||||
Sbjct: 146525 acatgacaagacgacaaacgact 146547



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>ref|XM_623399.1| PREDICTED: Apis mellifera similar to ENSANGP00000014813 (LOC408509),
            mRNA
          Length = 1904

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 5    caacaagncaaacattatgatg 26
            ||||||| ||||||||||||||
Sbjct: 1104 caacaagacaaacattatgatg 1125



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>ref|XM_392052.2| PREDICTED: Apis mellifera similar to ENSANGP00000014813 (LOC408509),
            mRNA
          Length = 2331

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 5    caacaagncaaacattatgatg 26
            ||||||| ||||||||||||||
Sbjct: 1239 caacaagacaaacattatgatg 1260



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 45       caaaacaactccatccaac 63
                |||||||||||||||||||
Sbjct: 15576301 caaaacaactccatccaac 15576319



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 109    caccaccgagcagcatcca 127
              |||||||||||||||||||
Sbjct: 619697 caccaccgagcagcatcca 619679



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>dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0644G05
          Length = 143119

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 45     caaaacaactccatccaac 63
              |||||||||||||||||||
Sbjct: 103861 caaaacaactccatccaac 103879



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>gb|AE003441.3| Drosophila melanogaster chromosome X, section 25 of 74 of the complete
              sequence
          Length = 285949

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 84     acatgacacgacgacaaacgact 106
              |||||||| ||||||||||||||
Sbjct: 145323 acatgacaagacgacaaacgact 145301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 646,410
Number of Sequences: 3902068
Number of extensions: 646410
Number of successful extensions: 38734
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38697
Number of HSP's gapped (non-prelim): 37
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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