ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479751.1| Oryza sativa (japonica cultivar-group), mRNA 230 3e-57
2ref|XM_507095.1| PREDICTED Oryza sativa (japonica cultivar-group... 230 3e-57
3dbj|AK070703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 3e-57
4dbj|AK059664.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 3e-57
5gb|AY103623.1| Zea mays PCO141453 mRNA sequence 155 1e-34
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
7dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
8gb|AC145590.3| Mus musculus BAC clone RP24-175D4 from chromosome... 44 0.39
9gb|AC133904.9| Mus musculus chromosome 19, clone RP24-143J12, co... 44 0.39
10gb|AC158778.4| Mus musculus chromosome 19, clone RP24-90P13, com... 44 0.39
11emb|AL162402.19| Human DNA sequence from clone RP5-1054K23 on ch... 44 0.39
12emb|AL078460.6|HSDJ341O5 Human DNA sequence from clone RP3-341O5... 44 0.39
13gb|BC037846.2| Homo sapiens cDNA clone IMAGE:4815103 44 0.39
14gb|AC103596.2| Homo sapiens chromosome 1 clone RP4-669H10, compl... 44 0.39
15dbj|AB023144.2| Homo sapiens mRNA for KIAA0927 protein, partial cds 44 0.39
16emb|CR656257.2|CNS0F5C7 Tetraodon nigroviridis full-length cDNA 42 1.5
17gb|AC144729.29| Medicago truncatula clone mth2-15j6, complete se... 42 1.5
18emb|AL121879.14|HSDJ961O8 Human DNA sequence from clone RP5-961O... 42 1.5
19gb|AC008602.8| Homo sapiens chromosome 5 clone CTB-107J24, compl... 42 1.5
20gb|AC109474.2| Homo sapiens chromosome 5 clone RP11-414I19, comp... 42 1.5
21gb|AC093208.2| Homo sapiens chromosome 5 clone CTC-493D22, compl... 42 1.5
22gb|AC010431.7|AC010431 Homo sapiens chromosome 5 clone CTD-2201G... 42 1.5
23gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, com... 42 1.5
24dbj|AP001680.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.5
25gb|AC152508.3| Tribolium castaneum BAC T.cast_C29K22 (Clemson U... 42 1.5
26dbj|AP000460.1| Homo sapiens genomic DNA, chromosome 21q21.2, cl... 42 1.5
27gb|AC147663.3| Pan troglodytes BAC clone CH251-304A22 from Y, co... 40 6.0
28emb|CR790381.6| Zebrafish DNA sequence from clone DKEY-202K24 in... 40 6.0
29gb|AC124465.6| Mus musculus BAC clone RP24-156M16 from chromosom... 40 6.0
30emb|CR730806.1|CNS0GQU3 Tetraodon nigroviridis full-length cDNA 40 6.0
31gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, comp... 40 6.0
32gb|AC159983.8| Mus musculus BAC clone RP23-192C23 from chromosom... 40 6.0
33emb|AL359438.19| Human DNA sequence from clone RP11-261A1 on chr... 40 6.0
34emb|AL353645.16| Human DNA sequence from clone RP11-446A5 on chr... 40 6.0
35emb|AL353633.13| Human DNA sequence from clone RP11-452B18 on ch... 40 6.0
36emb|AL161772.17| Human DNA sequence from clone RP11-172H24 on ch... 40 6.0
37emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
38dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, ... 40 6.0
39dbj|BS000588.2| Pan troglodytes chromosome Y clone:PTB-443K18, c... 40 6.0
40gb|AC091782.5| Genomic sequence for Mus musculus, clone RP23-103... 40 6.0
41gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.0
42gb|AC093868.2| Homo sapiens BAC clone RP11-590C19 from 4, comple... 40 6.0
43gb|AC154729.2| Mus musculus BAC clone RP24-377H17 from chromosom... 40 6.0
44gb|AC019179.4|AC019179 Homo sapiens BAC clone RP11-240A16 from 4... 40 6.0
45dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
46gb|AC021171.6| Homo sapiens BAC clone RP11-674I16 from 2, comple... 40 6.0
47gb|AC154496.2| Mus musculus BAC clone RP24-112B24 from chromosom... 40 6.0
48gb|AC079142.15| Homo sapiens X BAC RP11-657D19 (Roswell Park Can... 40 6.0
49gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, comple... 40 6.0
50dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, ... 40 6.0 
>ref|XM_479751.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 722

 Score =  230 bits (116), Expect = 3e-57
 Identities = 166/183 (90%)
 Strand = Plus / Minus

                                                                       
Query: 253 ccgccgggagctatcctcacttcccagtccaagggatttctgtgcattggcgattccctc 312
           ||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct: 479 ccgccgggagccatcctcattccccagtccaagggatttctgtgcattggcaattccctc 420

                                                                       
Query: 313 ttcgtcccaaaactgtgtgaatattttgaagaaaaagttcacattgcgggagacactgta 372
           ||| ||||| ||||||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct: 419 ttcatcccagaactgtgtgaagatcttgaagaaaaagttcacattgcgagaaacactgta 360

                                                                       
Query: 373 tgccatcacgggaggaagaggcttgacaagtgtgtncacggtgaaaactctccgcagaaa 432
           ||||||||| ||||||||||||||||||||||| | |||  | || ||||||||||||||
Sbjct: 359 tgccatcacaggaggaagaggcttgacaagtgtatccacactaaatactctccgcagaaa 300

              
Query: 433 cct 435
           |||
Sbjct: 299 cct 297
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>ref|XM_507095.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498H04.23 mRNA
          Length = 895

 Score =  230 bits (116), Expect = 3e-57
 Identities = 166/183 (90%)
 Strand = Plus / Minus

                                                                       
Query: 253 ccgccgggagctatcctcacttcccagtccaagggatttctgtgcattggcgattccctc 312
           ||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct: 480 ccgccgggagccatcctcattccccagtccaagggatttctgtgcattggcaattccctc 421

                                                                       
Query: 313 ttcgtcccaaaactgtgtgaatattttgaagaaaaagttcacattgcgggagacactgta 372
           ||| ||||| ||||||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct: 420 ttcatcccagaactgtgtgaagatcttgaagaaaaagttcacattgcgagaaacactgta 361

                                                                       
Query: 373 tgccatcacgggaggaagaggcttgacaagtgtgtncacggtgaaaactctccgcagaaa 432
           ||||||||| ||||||||||||||||||||||| | |||  | || ||||||||||||||
Sbjct: 360 tgccatcacaggaggaagaggcttgacaagtgtatccacactaaatactctccgcagaaa 301

              
Query: 433 cct 435
           |||
Sbjct: 300 cct 298
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>dbj|AK070703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058O18, full
           insert sequence
          Length = 895

 Score =  230 bits (116), Expect = 3e-57
 Identities = 166/183 (90%)
 Strand = Plus / Minus

                                                                       
Query: 253 ccgccgggagctatcctcacttcccagtccaagggatttctgtgcattggcgattccctc 312
           ||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct: 480 ccgccgggagccatcctcattccccagtccaagggatttctgtgcattggcaattccctc 421

                                                                       
Query: 313 ttcgtcccaaaactgtgtgaatattttgaagaaaaagttcacattgcgggagacactgta 372
           ||| ||||| ||||||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct: 420 ttcatcccagaactgtgtgaagatcttgaagaaaaagttcacattgcgagaaacactgta 361

                                                                       
Query: 373 tgccatcacgggaggaagaggcttgacaagtgtgtncacggtgaaaactctccgcagaaa 432
           ||||||||| ||||||||||||||||||||||| | |||  | || ||||||||||||||
Sbjct: 360 tgccatcacaggaggaagaggcttgacaagtgtatccacactaaatactctccgcagaaa 301

              
Query: 433 cct 435
           |||
Sbjct: 300 cct 298
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>dbj|AK059664.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E05, full
           insert sequence
          Length = 722

 Score =  230 bits (116), Expect = 3e-57
 Identities = 166/183 (90%)
 Strand = Plus / Minus

                                                                       
Query: 253 ccgccgggagctatcctcacttcccagtccaagggatttctgtgcattggcgattccctc 312
           ||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct: 479 ccgccgggagccatcctcattccccagtccaagggatttctgtgcattggcaattccctc 420

                                                                       
Query: 313 ttcgtcccaaaactgtgtgaatattttgaagaaaaagttcacattgcgggagacactgta 372
           ||| ||||| ||||||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct: 419 ttcatcccagaactgtgtgaagatcttgaagaaaaagttcacattgcgagaaacactgta 360

                                                                       
Query: 373 tgccatcacgggaggaagaggcttgacaagtgtgtncacggtgaaaactctccgcagaaa 432
           ||||||||| ||||||||||||||||||||||| | |||  | || ||||||||||||||
Sbjct: 359 tgccatcacaggaggaagaggcttgacaagtgtatccacactaaatactctccgcagaaa 300

              
Query: 433 cct 435
           |||
Sbjct: 299 cct 297
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>gb|AY103623.1| Zea mays PCO141453 mRNA sequence
          Length = 1198

 Score =  155 bits (78), Expect = 1e-34
 Identities = 149/173 (86%)
 Strand = Plus / Minus

                                                                       
Query: 275 cccagtccaagggatttctgtgcattggcgattccctcttcgtcccaaaactgtgtgaat 334
           |||||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||| 
Sbjct: 474 cccagtccaagggacttctgggcattggcaattccttcttcatcccaaaactgtgtgaag 415

                                                                       
Query: 335 attttgaagaaaaagttcacattgcgggagacactgtatgccatcacgggaggaagaggc 394
           ||   |||||| ||||| | ||||||||| || ||||||||||| || ||||| ||||||
Sbjct: 414 atccggaagaagaagtttatattgcgggatacgctgtatgccattacaggagggagaggc 355

                                                                
Query: 395 ttgacaagtgtgtncacggtgaaaactctccgcagaaacctactgttgcgctg 447
           ||||||||||||| |||| | |||||||||  ||||||||| ||||| |||||
Sbjct: 354 ttgacaagtgtgtccacgctaaaaactctcttcagaaacctgctgttccgctg 302
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score =  137 bits (69), Expect = 3e-29
 Identities = 104/116 (89%)
 Strand = Plus / Minus

                                                                          
Query: 318    cccaaaactgtgtgaatattttgaagaaaaagttcacattgcgggagacactgtatgcca 377
              |||| ||||||||||| || ||||||||||||||||||||||| || |||||||||||||
Sbjct: 667311 cccagaactgtgtgaagatcttgaagaaaaagttcacattgcgagaaacactgtatgcca 667252

                                                                      
Query: 378    tcacgggaggaagaggcttgacaagtgtgtncacggtgaaaactctccgcagaaac 433
              |||| ||||||||||||||||||||||| | |||  | || |||||||||||||||
Sbjct: 667251 tcacaggaggaagaggcttgacaagtgtatccacactaaatactctccgcagaaac 667196



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                          
Query: 253    ccgccgggagctatcctcacttcccagtccaagggatttctgtgcattggcgattccctc 312
              ||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct: 667965 ccgccgggagccatcctcattccccagtccaagggatttctgtgcattggcaattccctc 667906

                 
Query: 313    ttc 315
              |||
Sbjct: 667905 ttc 667903
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>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0498H04
          Length = 151046

 Score =  137 bits (69), Expect = 3e-29
 Identities = 104/116 (89%)
 Strand = Plus / Minus

                                                                         
Query: 318   cccaaaactgtgtgaatattttgaagaaaaagttcacattgcgggagacactgtatgcca 377
             |||| ||||||||||| || ||||||||||||||||||||||| || |||||||||||||
Sbjct: 94689 cccagaactgtgtgaagatcttgaagaaaaagttcacattgcgagaaacactgtatgcca 94630

                                                                     
Query: 378   tcacgggaggaagaggcttgacaagtgtgtncacggtgaaaactctccgcagaaac 433
             |||| ||||||||||||||||||||||| | |||  | || |||||||||||||||
Sbjct: 94629 tcacaggaggaagaggcttgacaagtgtatccacactaaatactctccgcagaaac 94574



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                         
Query: 253   ccgccgggagctatcctcacttcccagtccaagggatttctgtgcattggcgattccctc 312
             ||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct: 95343 ccgccgggagccatcctcattccccagtccaagggatttctgtgcattggcaattccctc 95284

                
Query: 313   ttc 315
             |||
Sbjct: 95283 ttc 95281
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>gb|AC145590.3| Mus musculus BAC clone RP24-175D4 from chromosome 19, complete sequence
          Length = 179063

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 320    caaaactgtgtgaatattttga 341
              ||||||||||||||||||||||
Sbjct: 173747 caaaactgtgtgaatattttga 173768
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>gb|AC133904.9| Mus musculus chromosome 19, clone RP24-143J12, complete sequence
          Length = 163882

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 320   caaaactgtgtgaatattttga 341
             ||||||||||||||||||||||
Sbjct: 55902 caaaactgtgtgaatattttga 55881
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>gb|AC158778.4| Mus musculus chromosome 19, clone RP24-90P13, complete sequence
          Length = 167819

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 320   caaaactgtgtgaatattttga 341
             ||||||||||||||||||||||
Sbjct: 48292 caaaactgtgtgaatattttga 48313
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>emb|AL162402.19| Human DNA sequence from clone RP5-1054K23 on chromosome
           1p13.3-21.1, complete sequence
          Length = 80743

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 3   acttttatacttttaaatttaa 24
           ||||||||||||||||||||||
Sbjct: 196 acttttatacttttaaatttaa 217
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>emb|AL078460.6|HSDJ341O5 Human DNA sequence from clone RP3-341O5 on chromosome 22, complete
            sequence
          Length = 35213

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 155  caaaactagccaggccacaccc 176
            ||||||||||||||||||||||
Sbjct: 2708 caaaactagccaggccacaccc 2729
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>gb|BC037846.2| Homo sapiens cDNA clone IMAGE:4815103
          Length = 1945

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 155 caaaactagccaggccacaccc 176
           ||||||||||||||||||||||
Sbjct: 787 caaaactagccaggccacaccc 808
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>gb|AC103596.2| Homo sapiens chromosome 1 clone RP4-669H10, complete sequence
          Length = 121021

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 3      acttttatacttttaaatttaa 24
              ||||||||||||||||||||||
Sbjct: 119217 acttttatacttttaaatttaa 119238
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>dbj|AB023144.2| Homo sapiens mRNA for KIAA0927 protein, partial cds
          Length = 6301

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 155  caaaactagccaggccacaccc 176
            ||||||||||||||||||||||
Sbjct: 5158 caaaactagccaggccacaccc 5179
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>emb|CR656257.2|CNS0F5C7 Tetraodon nigroviridis full-length cDNA
          Length = 1419

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 190 taaacaggtcctccagagcctagtg 214
           ||||||||||||||||||| |||||
Sbjct: 882 taaacaggtcctccagagcatagtg 858
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>gb|AC144729.29| Medicago truncatula clone mth2-15j6, complete sequence
          Length = 113550

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 313   ttcgtcccaaaactgtgtgaa 333
             |||||||||||||||||||||
Sbjct: 73378 ttcgtcccaaaactgtgtgaa 73358
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>emb|AL121879.14|HSDJ961O8 Human DNA sequence from clone RP5-961O8 on chromosome Xq23-24, complete
             sequence
          Length = 104695

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 177   atattctctatcataaacagg 197
             |||||||||||||||||||||
Sbjct: 33237 atattctctatcataaacagg 33217
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>gb|AC008602.8| Homo sapiens chromosome 5 clone CTB-107J24, complete sequence
          Length = 106301

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 328   tgtgaatattttgaagaaaaa 348
             |||||||||||||||||||||
Sbjct: 86053 tgtgaatattttgaagaaaaa 86073
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>gb|AC109474.2| Homo sapiens chromosome 5 clone RP11-414I19, complete sequence
          Length = 180650

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 320    caaaactgtgtgaatattttgaagaaaaagttcacat 356
              |||||||| || ||||||||||| |||||||| ||||
Sbjct: 150007 caaaactgagttaatattttgaaaaaaaagttgacat 149971
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>gb|AC093208.2| Homo sapiens chromosome 5 clone CTC-493D22, complete sequence
          Length = 112115

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 328   tgtgaatattttgaagaaaaa 348
             |||||||||||||||||||||
Sbjct: 46712 tgtgaatattttgaagaaaaa 46692
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>gb|AC010431.7|AC010431 Homo sapiens chromosome 5 clone CTD-2201G3, complete sequence
          Length = 126750

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  tgtgaatattttgaagaaaaa 348
            |||||||||||||||||||||
Sbjct: 3055 tgtgaatattttgaagaaaaa 3035
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>gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, complete sequence
          Length = 216977

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   taagcataataaacaagtcat 154
             |||||||||||||||||||||
Sbjct: 86384 taagcataataaacaagtcat 86364
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>dbj|AP001680.1| Homo sapiens genomic DNA, chromosome 21q, section 24/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 3      acttttatacttttaaatttaaacgaaaa 31
              |||||||||| || |||||||||||||||
Sbjct: 160280 acttttatacattcaaatttaaacgaaaa 160252
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>gb|AC152508.3| Tribolium castaneum  BAC T.cast_C29K22 (Clemson University Genomics
             Institute Tribolium castaneum BAC Library (Red Flour
             Beetle)) complete sequence
          Length = 143678

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     cttttatacttttaaatttaa 24
             |||||||||||||||||||||
Sbjct: 31898 cttttatacttttaaatttaa 31918
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>dbj|AP000460.1| Homo sapiens genomic DNA, chromosome 21q21.2, clone:B87L12, complete
             sequence
          Length = 75546

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 3     acttttatacttttaaatttaaacgaaaa 31
             |||||||||| || |||||||||||||||
Sbjct: 26939 acttttatacattcaaatttaaacgaaaa 26911
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>gb|AC147663.3| Pan troglodytes BAC clone CH251-304A22 from Y, complete sequence
          Length = 162854

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    aatattttgaagaaaaagtt 351
              ||||||||||||||||||||
Sbjct: 114644 aatattttgaagaaaaagtt 114663
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>emb|CR790381.6| Zebrafish DNA sequence from clone DKEY-202K24 in linkage group 3,
             complete sequence
          Length = 93389

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     cttttatacttttaaattta 23
             ||||||||||||||||||||
Sbjct: 89542 cttttatacttttaaattta 89561
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>gb|AC124465.6| Mus musculus BAC clone RP24-156M16 from chromosome 13, complete
             sequence
          Length = 169973

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    ctactggaaaatgcatgaaa 102
             ||||||||||||||||||||
Sbjct: 56743 ctactggaaaatgcatgaaa 56762
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>emb|CR730806.1|CNS0GQU3 Tetraodon nigroviridis full-length cDNA
          Length = 1451

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 191 aaacaggtcctccagagcctagtg 214
           |||||||||||||||||| |||||
Sbjct: 928 aaacaggtcctccagagcatagtg 905
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>gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, complete sequence
          Length = 163480

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   aatattttgaagaaaaagtt 351
             ||||||||||||||||||||
Sbjct: 66338 aatattttgaagaaaaagtt 66357
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>gb|AC159983.8| Mus musculus BAC clone RP23-192C23 from chromosome 13, complete sequence
          Length = 193502

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     ctactggaaaatgcatgaaa 102
              ||||||||||||||||||||
Sbjct: 135305 ctactggaaaatgcatgaaa 135324
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>emb|AL359438.19| Human DNA sequence from clone RP11-261A1 on chromosome 13 Contains a
             legumain (LGMN) (PRSC1) pseudogene, complete sequence
          Length = 166490

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    atgcatgaaacttcaaaatt 112
             ||||||||||||||||||||
Sbjct: 39360 atgcatgaaacttcaaaatt 39379
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>emb|AL353645.16| Human DNA sequence from clone RP11-446A5 on chromosome 9 Contains the
            5' end of the AUH gene for AU RNA binding
            protein/enoyl-Coenzyme A hydratase and a CpG island,
            complete sequence
          Length = 31463

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  aataaacaagtcatcaaaac 160
            ||||||||||||||||||||
Sbjct: 9001 aataaacaagtcatcaaaac 9020
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>emb|AL353633.13| Human DNA sequence from clone RP11-452B18 on chromosome 13 Contains a
             novel pseudogene and a novel gene, complete sequence
          Length = 166649

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     tttatacttttaaatttaaa 25
             ||||||||||||||||||||
Sbjct: 13062 tttatacttttaaatttaaa 13043
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>emb|AL161772.17| Human DNA sequence from clone RP11-172H24 on chromosome 13 Contains the
             3' end of the gene for polycystic kidney disease,
             autosomal recessive (Probe hTg737) (TG737), a novel
             pseudogene (FLJ124251 and FLJ14793), the 5' end of the
             IL17D gene for interleukin 17D and a CpG island, complete
             sequence
          Length = 125579

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tttatacttttaaatttaaa 25
             ||||||||||||||||||||
Sbjct: 28451 tttatacttttaaatttaaa 28470
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>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
             complete sequence
          Length = 144144

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   caagtcatcaaaactagcca 166
             ||||||||||||||||||||
Sbjct: 99370 caagtcatcaaaactagcca 99351
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>dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, complete sequence
          Length = 190308

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    aatattttgaagaaaaagtt 351
              ||||||||||||||||||||
Sbjct: 187844 aatattttgaagaaaaagtt 187825
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>dbj|BS000588.2| Pan troglodytes chromosome Y clone:PTB-443K18, complete sequence
          Length = 151892

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 332  aatattttgaagaaaaagtt 351
            ||||||||||||||||||||
Sbjct: 4082 aatattttgaagaaaaagtt 4063
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>gb|AC091782.5| Genomic sequence for Mus musculus, clone RP23-103P23, complete sequence
          Length = 195574

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     ctactggaaaatgcatgaaa 102
              ||||||||||||||||||||
Sbjct: 135271 ctactggaaaatgcatgaaa 135290
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 332      aatattttgaagaaaaagtt 351
                ||||||||||||||||||||
Sbjct: 17217836 aatattttgaagaaaaagtt 17217855
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>gb|AC093868.2| Homo sapiens BAC clone RP11-590C19 from 4, complete sequence
          Length = 163334

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      ttttatacttttaaatttaa 24
              ||||||||||||||||||||
Sbjct: 149917 ttttatacttttaaatttaa 149898
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>gb|AC154729.2| Mus musculus BAC clone RP24-377H17 from chromosome 14, complete
             sequence
          Length = 150383

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 94    tgcatgaaacttcaaaattagacagacc 121
             |||| |||||||||||| ||||||||||
Sbjct: 32110 tgcaagaaacttcaaaagtagacagacc 32137
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>gb|AC019179.4|AC019179 Homo sapiens BAC clone RP11-240A16 from 4, complete sequence
          Length = 196721

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 2      gacttttatacttttaaatttaaa 25
              ||||||||||||||| ||||||||
Sbjct: 108295 gacttttatacttttcaatttaaa 108272
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 147     caagtcatcaaaactagcca 166
               ||||||||||||||||||||
Sbjct: 5123097 caagtcatcaaaactagcca 5123078
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>gb|AC021171.6| Homo sapiens BAC clone RP11-674I16 from 2, complete sequence
          Length = 162609

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 136   agcataataaacaagtcatcaaaa 159
             ||||| ||||||||||||||||||
Sbjct: 22987 agcattataaacaagtcatcaaaa 23010
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>gb|AC154496.2| Mus musculus BAC clone RP24-112B24 from chromosome 13, complete sequence
          Length = 167366

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    cagcaacttgtttcatggaa 234
              ||||||||||||||||||||
Sbjct: 130718 cagcaacttgtttcatggaa 130699
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>gb|AC079142.15| Homo sapiens X BAC RP11-657D19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162639

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 90     aaaatgcatgaaacttcaaaatta 113
              ||||||||||||||||||| ||||
Sbjct: 114307 aaaatgcatgaaacttcaatatta 114330
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>gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, complete sequence
          Length = 112289

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  acttcaaaattagacagacc 121
            ||||||||||||||||||||
Sbjct: 3405 acttcaaaattagacagacc 3424
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>dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, complete sequences
          Length = 163477

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   aatattttgaagaaaaagtt 351
             ||||||||||||||||||||
Sbjct: 97139 aatattttgaagaaaaagtt 97120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,594,762
Number of Sequences: 3902068
Number of extensions: 4594762
Number of successful extensions: 125022
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124777
Number of HSP's gapped (non-prelim): 245
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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