ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27p21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478772.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1227 Score = 383 bits (193), Expect = e-103 Identities = 304/341 (89%) Strand = Plus / Minus Query: 161 tcctgttccttctgcttttggatggcttcaacctttttcatgtactcgtctgtgattttt 220 ||||||||||||||||||||||| ||||| | |||||||||||||||||| || | |||| Sbjct: 882 tcctgttccttctgcttttggatagcttcgatctttttcatgtactcgtcagtaactttt 823 Query: 221 tgtagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctagc 280 |||||||| || || ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 822 tgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttccttctcaagc 763 Query: 281 ttatcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttca 340 ||||| || |||||||| || |||| ||||||||| || ||||||||||||||||||||| Sbjct: 762 ttatcgtaagctttgatggcatctcttcttatgttccttatagcaaccttgccttcttca 703 Query: 341 gataacttagctacggtttttgtcatctcctttctgcgatcagatgtcaatggtgggaca 400 | ||| ||||| || ||||||| || ||||||||||| ||||| ||||||||||| ||| Sbjct: 702 gctaatttagcaacagtttttgccaattcctttctgcggtcagaagtcaatggtggaaca 643 Query: 401 gtgactcgtatcacttctccatcattgcttggtgttaccccaatatttgcagcaactata 460 |||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||| Sbjct: 642 gtgactcgaatcacttctccatcattgcttggtgtaacccccagatttgcagcaactatt 583 Query: 461 gctttctcaatgagcttgaggcaagacttgtcatatggctg 501 | ||||||||||||||||||| | || |||||||||||||| Sbjct: 582 gttttctcaatgagcttgagggaggatttgtcatatggctg 542
>dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I12, full insert sequence Length = 1226 Score = 359 bits (181), Expect = 6e-96 Identities = 302/341 (88%), Gaps = 1/341 (0%) Strand = Plus / Minus Query: 161 tcctgttccttctgcttttggatggcttcaacctttttcatgtactcgtctgtgattttt 220 ||||||||||||||||||||||| ||||| | |||||||||||||||||| || | |||| Sbjct: 881 tcctgttccttctgcttttggatagcttcgatctttttcatgtactcgtcagtaactttt 822 Query: 221 tgtagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctagc 280 ||||||| || || ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 821 -gtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttccttctcaagc 763 Query: 281 ttatcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttca 340 ||||| || ||| |||| || |||| ||||||||| || ||||||||||||||||||||| Sbjct: 762 ttatcgtaagctatgatggcatctcttcttatgttccttatagcaaccttgccttcttca 703 Query: 341 gataacttagctacggtttttgtcatctcctttctgcgatcagatgtcaatggtgggaca 400 | ||| ||||| || ||||||| || ||||||||||| ||||| ||||||||||| ||| Sbjct: 702 gctaatttagcaacagtttttgccaattcctttctgcggtcagaagtcaatggtggaaca 643 Query: 401 gtgactcgtatcacttctccatcattgcttggtgttaccccaatatttgcagcaactata 460 |||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||| Sbjct: 642 gtgactcgaatcacttctccatcattgcttggtgtaacccccagatttgcagcaactatt 583 Query: 461 gctttctcaatgagcttgaggcaagacttgtcatatggctg 501 | ||||||||||||||||||| | || |||||||||||||| Sbjct: 582 gttttctcaatgagcttgagggaggatttgtcatatggctg 542
>gb|AY108240.1| Zea mays PCO100302 mRNA sequence Length = 776 Score = 313 bits (158), Expect = 3e-82 Identities = 269/306 (87%) Strand = Plus / Minus Query: 193 ctttttcatgtactcgtctgtgattttttgtagatcggctgataaatccttcacattatc 252 |||||||||||||||||| |||| ||||||||| || ||||| ||||| |||||||| || Sbjct: 775 ctttttcatgtactcgtccgtgactttttgtaggtcagctgacaaatctttcacattgtc 716 Query: 253 ttcagaaagtttcttttccttctctagcttatcataggctttgattgcgtctcgtcttat 312 ||||||||| ||||||||||||| ||| ||||| || ||||||||||| |||| |||||| Sbjct: 715 ttcagaaagcttcttttccttctgtagtttatcgtaagctttgattgcatctcttcttat 656 Query: 313 gtttctgatagcaaccttgccttcttcagataacttagctacggtttttgtcatctcctt 372 ||| || |||||||||||||| ||||||| || |||||||| || |||| | ||||| Sbjct: 655 gttccttatagcaaccttgccatcttcagccaatttagctactgtctttgctaattcctt 596 Query: 373 tctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctccatcattgcttgg 432 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 595 tctgcgatcagatgtcaatggtgggacagtcactcgtatcacttctccgtcattgcttgg 536 Query: 433 tgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggcaagacttgtc 492 ||| || |||| |||||| |||||||||| |||||| || |||||||||| |||||||| Sbjct: 535 tgtcacaccaagatttgcggcaactatagttttctcgataagcttgaggcttgacttgtc 476 Query: 493 atatgg 498 |||||| Sbjct: 475 atatgg 470
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 155 bits (78), Expect = 2e-34 Identities = 105/114 (92%) Strand = Plus / Minus Query: 369 cctttctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctccatcattgc 428 |||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 22952090 cctttctgcggtcagaagtcaatggtggaacagtgactcgaatcacttctccatcattgc 22952031 Query: 429 ttggtgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggc 482 ||||||| ||||| | ||||||||||||||| | |||||||||||||||||||| Sbjct: 22952030 ttggtgtaacccccagatttgcagcaactattgttttctcaatgagcttgaggc 22951977 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 162 cctgttccttctgcttttggatggcttcaacctttttcatgtactcgtc 210 |||||||||||||||||||||| ||||| | |||||||||||||||||| Sbjct: 22954341 cctgttccttctgcttttggatagcttcgatctttttcatgtactcgtc 22954293 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 220 ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttcct 272 ||||||||| || || ||||||||||| ||||||||||||||||||||||||| Sbjct: 22954166 ttgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttcct 22954114 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 326 accttgccttcttcagataacttagctacggtttttg 362 |||||||||||||||| ||| ||||| || ||||||| Sbjct: 22952942 accttgccttcttcagctaatttagcaacagtttttg 22952906
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 155 bits (78), Expect = 2e-34 Identities = 105/114 (92%) Strand = Plus / Minus Query: 369 cctttctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctccatcattgc 428 |||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 27304 cctttctgcggtcagaagtcaatggtggaacagtgactcgaatcacttctccatcattgc 27245 Query: 429 ttggtgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggc 482 ||||||| ||||| | ||||||||||||||| | |||||||||||||||||||| Sbjct: 27244 ttggtgtaacccccagatttgcagcaactattgttttctcaatgagcttgaggc 27191 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 162 cctgttccttctgcttttggatggcttcaacctttttcatgtactcgtc 210 |||||||||||||||||||||| ||||| | |||||||||||||||||| Sbjct: 29555 cctgttccttctgcttttggatagcttcgatctttttcatgtactcgtc 29507 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 220 ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttcct 272 ||||||||| || || ||||||||||| ||||||||||||||||||||||||| Sbjct: 29380 ttgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttcct 29328 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 326 accttgccttcttcagataacttagctacggtttttg 362 |||||||||||||||| ||| ||||| || ||||||| Sbjct: 28156 accttgccttcttcagctaatttagcaacagtttttg 28120
>emb|AJ133751.1|SOL133751 Spinacia oleracea mRNA for chloroplast ribosome recycling factor Length = 1109 Score = 63.9 bits (32), Expect = 5e-07 Identities = 143/180 (79%) Strand = Plus / Minus Query: 160 ctcctgttccttctgcttttggatggcttcaacctttttcatgtactcgtctgtgatttt 219 ||||||||| |||||||| | ||| | |||||||| ||||||||||| || || | || Sbjct: 827 ctcctgttctttctgcttgtagatagactcaaccttcttcatgtactcatcggtcaactt 768 Query: 220 ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctag 279 || ||||| || |||| || |||||||||||||| ||||| || ||||||||||| || Sbjct: 767 ctgcagatcagccgataggtctttcacattatcttccgaaagctttttttccttctcaag 708 Query: 280 cttatcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttc 339 || ||||| | ||| | || |||| ||||||||| || | |||||||| |||||||| Sbjct: 707 tttttcataagatttcagagcatctcttcttatgttcctcactgcaacctttccttcttc 648
>emb|X72384.1|DCD2NLP D.carota D2 mRNA for glycine rich protein Length = 946 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 232 tgataaatccttcacattatcttcagaaagtttcttttccttctctagcttatcataggc 291 |||||| ||||||||||||||||| || || || |||||||| || || |||||||||| Sbjct: 600 tgataagtccttcacattatcttctgagagctttttttccttttcaagtttatcatagga 541 Query: 292 tttgattgcgtctcgtcttat 312 ||| || || |||| |||||| Sbjct: 540 tttaatggcatctcttcttat 520
>emb|CR450763.5| Zebrafish DNA sequence from clone CH211-180M24, complete sequence Length = 97685 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 175 cttttggatggcttcaaccttt 196 |||||||||||||||||||||| Sbjct: 13586 cttttggatggcttcaaccttt 13607
>gb|AC118290.7| Rattus norvegicus 2 BAC CH230-366D18 (Children's Hospital Oakland Research Institute) complete sequence Length = 210896 Score = 44.1 bits (22), Expect = 0.44 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 tcctnagtcttagcaagagtccaac 50 |||| |||||||||||||||||||| Sbjct: 193961 tccttagtcttagcaagagtccaac 193985
>gb|AY112589.1| Zea mays CL61174_1 mRNA sequence Length = 414 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 156 tcagctcctgttccttctgcttttggatgg 185 |||| ||||||||||||||||| ||||||| Sbjct: 374 tcagttcctgttccttctgcttctggatgg 403
>ref|NM_116184.2| Arabidopsis thaliana unknown protein AT3G63190 mRNA, complete cds Length = 1235 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 236 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 288 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 866 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 814
>gb|AC122253.5| Mus musculus BAC clone RP23-171K3 from chromosome 17, complete sequence Length = 197161 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 ctcagctcctgttccttctgc 175 ||||||||||||||||||||| Sbjct: 191378 ctcagctcctgttccttctgc 191358
>gb|AC103604.4| Mus musculus chromosome 3, clone RP23-95A20, complete sequence Length = 170670 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 aactatagctttctcaatgag 474 ||||||||||||||||||||| Sbjct: 162970 aactatagctttctcaatgag 162950
>gb|AY092982.1| Arabidopsis thaliana putative protein (At3g63190) mRNA, complete cds Length = 1173 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 236 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 288 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 804 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 752
>gb|AY056778.1| Arabidopsis thaliana AT3g63190/F16M2_40 mRNA, complete cds Length = 1212 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 236 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 288 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 866 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 814
>gb|AC105155.9| Mus musculus chromosome 3, clone RP24-346C8, complete sequence Length = 162298 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 aactatagctttctcaatgag 474 ||||||||||||||||||||| Sbjct: 134142 aactatagctttctcaatgag 134162
>gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome 12, complete sequence Length = 134517 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 tcagaaatcttgtggccagtt 122 ||||||||||||||||||||| Sbjct: 58113 tcagaaatcttgtggccagtt 58133
>gb|AF372883.1|AF372883 Arabidopsis thaliana AT3g63190/F16M2_40 mRNA, complete cds Length = 1050 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 236 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 288 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 786 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 734
>emb|BX822699.1|CNS0A72X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB59ZB01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1225 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 236 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 288 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 916 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 864
>emb|BX825146.1|CNS0A6FZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL15ZF09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1062 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 236 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 288 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 802 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 750
>gb|BT002678.1| Arabidopsis thaliana At3g63190/F16M2_40 gene, complete cds Length = 828 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 236 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 288 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 737 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 685
>gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome 17, complete sequence Length = 157937 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ctcagctcctgttccttctgc 175 ||||||||||||||||||||| Sbjct: 115698 ctcagctcctgttccttctgc 115718
>gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, complete sequence Length = 197112 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gttccttctgcttttggatggctt 188 ||||| |||||||||||||||||| Sbjct: 59770 gttccctctgcttttggatggctt 59793
>ref|XM_956989.1| Neurospora crassa OR74A hypothetical protein (NCU07949.1) partial mRNA Length = 8481 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 ttcttttccttctctagctt 282 |||||||||||||||||||| Sbjct: 3755 ttcttttccttctctagctt 3736
>ref|XM_328654.1| Neurospora crassa OR74A hypothetical protein (NCU07949.1) partial mRNA Length = 8481 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 ttcttttccttctctagctt 282 |||||||||||||||||||| Sbjct: 3755 ttcttttccttctctagctt 3736
>gb|AC111010.5| Mus musculus BAC clone RP23-419L21 from chromosome 14, complete sequence Length = 205141 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ttcttttccttctctagctt 282 |||||||||||||||||||| Sbjct: 23505 ttcttttccttctctagctt 23524
>gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 242055 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 tcatctcctttctgcgatca 382 |||||||||||||||||||| Sbjct: 96145 tcatctcctttctgcgatca 96126
>gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, complete sequence Length = 176643 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gttccttctgcttttggatggctt 188 ||||| |||||||||||||||||| Sbjct: 104744 gttccctctgcttttggatggctt 104767
>ref|XM_742778.1| Aspergillus fumigatus Af293 tRNA-splicing endonuclease (Afu6g02060) partial mRNA Length = 6231 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 tcataggctttgattgcgtc 303 |||||||||||||||||||| Sbjct: 3143 tcataggctttgattgcgtc 3124
>ref|XM_539204.2| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 1 (LOC482083), mRNA Length = 15160 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cagctcctgttccttctgct 176 |||||||||||||||||||| Sbjct: 6612 cagctcctgttccttctgct 6593
>ref|XM_852242.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 8 (LOC482083), mRNA Length = 14734 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cagctcctgttccttctgct 176 |||||||||||||||||||| Sbjct: 6186 cagctcctgttccttctgct 6167
>ref|XM_852201.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 7 (LOC482083), mRNA Length = 14734 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cagctcctgttccttctgct 176 |||||||||||||||||||| Sbjct: 6186 cagctcctgttccttctgct 6167
>ref|XM_852160.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 6 (LOC482083), mRNA Length = 15175 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cagctcctgttccttctgct 176 |||||||||||||||||||| Sbjct: 6627 cagctcctgttccttctgct 6608
>ref|XM_852120.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 5 (LOC482083), mRNA Length = 14749 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cagctcctgttccttctgct 176 |||||||||||||||||||| Sbjct: 6201 cagctcctgttccttctgct 6182
>ref|XM_852074.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 4 (LOC482083), mRNA Length = 14863 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cagctcctgttccttctgct 176 |||||||||||||||||||| Sbjct: 6315 cagctcctgttccttctgct 6296
>ref|XM_843706.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 2 (LOC482083), mRNA Length = 14812 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cagctcctgttccttctgct 176 |||||||||||||||||||| Sbjct: 6264 cagctcctgttccttctgct 6245
>gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, complete sequence Length = 167364 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ataggctttgattgcgtctc 305 |||||||||||||||||||| Sbjct: 78585 ataggctttgattgcgtctc 78566
>gb|AC110540.7| Mus musculus chromosome 3, clone RP23-105B8, complete sequence Length = 232416 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 agaaagtttcttttccttct 275 |||||||||||||||||||| Sbjct: 57587 agaaagtttcttttccttct 57606
>gb|AC160063.12| Mus musculus 10 BAC RP24-502H14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 158603 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagctttctcaatgagcttg 478 |||||||||||||||||||| Sbjct: 80130 tagctttctcaatgagcttg 80149
>gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, complete sequence Length = 208416 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 agaaagtttcttttccttct 275 |||||||||||||||||||| Sbjct: 203871 agaaagtttcttttccttct 203890
>emb|AL844892.5| Human DNA sequence from clone RP11-396M20 on chromosome 10 Contains the 5' end of the GRID1 gene for glutamate receptor (ionotropic) delta 1, the 3' end of the gene for friend of EBNA2 (FOE) (KIAA0261) and five CpG islands, complete sequence Length = 167780 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 cttgctcagctcctgttcct 170 |||||||||||||||||||| Sbjct: 64036 cttgctcagctcctgttcct 64055
>emb|AL607062.10| Human DNA sequence from clone RP11-439F7 on chromosome 10 Contains a novel gene (LOC221035), complete sequence Length = 88210 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tttttgtcatctcctttctg 376 |||||||||||||||||||| Sbjct: 68033 tttttgtcatctcctttctg 68014
>gb|AF306784.1| Cherax quadricarinatus vitellogenin (vg) mRNA, complete cds Length = 7944 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ccttcacattatcttcagaa 259 |||||||||||||||||||| Sbjct: 3880 ccttcacattatcttcagaa 3861
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 gttccttctgcttttggatg 184 |||||||||||||||||||| Sbjct: 2037164 gttccttctgcttttggatg 2037145
>emb|BX571658.1| Wolinella succinogenes, complete genome; segment 2/7 Length = 346792 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 gtatcacttctccatcattg 427 |||||||||||||||||||| Sbjct: 85185 gtatcacttctccatcattg 85166
>emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chromosome 11 Contains the 3' end of the Tex14 gene for testis expressed gene 14, complete sequence Length = 200501 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 cagctcctgttccttctgcttttg 180 ||||||||||| |||||||||||| Sbjct: 186131 cagctcctgtttcttctgcttttg 186154
>emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in linkage group 17, complete sequence Length = 154824 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 tgtcatctcctttctgcgat 380 |||||||||||||||||||| Sbjct: 148312 tgtcatctcctttctgcgat 148331
>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17, complete sequence Length = 185139 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 tgtcatctcctttctgcgat 380 |||||||||||||||||||| Sbjct: 138824 tgtcatctcctttctgcgat 138843
>gb|AC010863.10| Homo sapiens chromosome 10 clone RP11-346E7, complete sequence Length = 186902 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tttttgtcatctcctttctg 376 |||||||||||||||||||| Sbjct: 64839 tttttgtcatctcctttctg 64820
>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence Length = 193714 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 tcatctcctttctgcgatca 382 |||||||||||||||||||| Sbjct: 175471 tcatctcctttctgcgatca 175452
>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence Length = 176095 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tgttccttctgcttttggat 183 |||||||||||||||||||| Sbjct: 145310 tgttccttctgcttttggat 145291
>dbj|AK138983.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530045A01 product:hypothetical protein, full insert sequence Length = 2593 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gttccttctgcttttggatggctt 188 ||||| |||||||||||||||||| Sbjct: 1241 gttccctctgcttttggatggctt 1264
>gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, complete sequence Length = 191309 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tgttccttctgcttttggat 183 |||||||||||||||||||| Sbjct: 14094 tgttccttctgcttttggat 14075
>ref|XM_626980.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_700), partial mRNA Length = 5739 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcctgttccttctgcttttg 180 |||||||||||||||||||| Sbjct: 4173 tcctgttccttctgcttttg 4154
>gb|AC153884.1| Mus musculus 6 BAC RP23-476E22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195597 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gtctcgtcttatgtttctga 320 |||||||||||||||||||| Sbjct: 133775 gtctcgtcttatgtttctga 133756
>dbj|BS000019.1| Pan troglodytes chromosome 22 clone:PTB-023I17, map 22, complete sequences Length = 141751 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 gaaagtttcttttccttctc 276 |||||||||||||||||||| Sbjct: 77045 gaaagtttcttttccttctc 77064
>gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complete sequence Length = 135567 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 attgcttggtgttaccccaa 443 |||||||||||||||||||| Sbjct: 22759 attgcttggtgttaccccaa 22740
>gb|AC147968.2| Gallus gallus BAC clone CH261-119F24 from chromosome unknown, complete sequence Length = 209917 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 accttgccttcttcagataa 345 |||||||||||||||||||| Sbjct: 165413 accttgccttcttcagataa 165432
>emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chromosome 2, complete sequence Length = 158364 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 cttttccttctctagcttat 284 |||||||||||||||||||| Sbjct: 111121 cttttccttctctagcttat 111140
>emb|AL928543.5| Mouse DNA sequence from clone RP23-345P1 on chromosome 2, complete sequence Length = 90551 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ataggctttgattgcgtctc 305 |||||||||||||||||||| Sbjct: 24017 ataggctttgattgcgtctc 23998
>emb|AL845165.4| Mouse DNA sequence from clone RP23-281N9 on chromosome 2, complete sequence Length = 112789 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 gtatcacttctccatcattg 427 |||||||||||||||||||| Sbjct: 40066 gtatcacttctccatcattg 40047 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,975,850 Number of Sequences: 3902068 Number of extensions: 4975850 Number of successful extensions: 111832 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111663 Number of HSP's gapped (non-prelim): 167 length of query: 504 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 482 effective length of database: 17,147,199,772 effective search space: 8264950290104 effective search space used: 8264950290104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
