ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27p18 |
|---|---|
| Clone Library Name | barley_pub |
>CJ119_CHICK (Q5ZJV4) Protein C10orf119 homolog| Length = 634 Score = 91.7 bits (226), Expect = 2e-18 Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 11/166 (6%) Frame = -2 Query: 617 LASKGVENTVLLKNLMESQMVEYDFEYYKLEMATDVQLLTLSEGKSNILPSDLVVPFRPS 438 L +KGV N L NL+ Q V+YDF Y+++E ++ +L SEG+S +LPSD V +P Sbjct: 460 LDTKGVHNVKALGNLITWQKVDYDFSYHQMEFPCNINVLITSEGRS-LLPSDCQVQLQPQ 518 Query: 437 TVSE----------VNATSEELESWRWYLATVRSLPQSSEPEIYQTIQDEMVSAMRND-R 291 + L +R YL+ +R L S E+ + ++++ V +ND Sbjct: 519 IIPPNMEEYMNSLLTAVLPSVLNKFRIYLSLLRLLDYSISDEVTKAVEEDFVEMRKNDPE 578 Query: 290 SLGCTELSRWLTMAQITASSFGEKSLSLEHWQMVKELERLRKERMQ 153 S+ +L R L +A+ + S G+ +LS E W K+LE LRK R+Q Sbjct: 579 SITADDLHRTLLVARFLSLSAGQTTLSRERWLRAKQLEALRKARLQ 624
>CJ119_HUMAN (Q9BTE3) Protein C10orf119| Length = 642 Score = 87.0 bits (214), Expect = 4e-17 Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 11/166 (6%) Frame = -2 Query: 617 LASKGVENTVLLKNLMESQMVEYDFEYYKLEMATDVQLLTLSEGKSNILPSDLVVPFRPS 438 L + GV N L NL+ Q V+YDF Y+++E ++ + SEG+S +LP+D + +P Sbjct: 468 LDTPGVHNVTALSNLITWQKVDYDFSYHQMEFPCNINVFITSEGRS-LLPADCQIHLQPQ 526 Query: 437 TV---------SEVNAT-SEELESWRWYLATVRSLPQSSEPEIYQTIQDEMVSAMRND-R 291 + S ++A L +R YL +R L S EI + ++D+ V +ND + Sbjct: 527 LIPPNMEEYMNSLLSAVLPSVLNKFRIYLTLLRFLEYSISDEITKAVEDDFVEMRKNDPQ 586 Query: 290 SLGCTELSRWLTMAQITASSFGEKSLSLEHWQMVKELERLRKERMQ 153 S+ +L + L +A+ + S G+ +LS E W K+LE LR+ R+Q Sbjct: 587 SITADDLHQLLVVARCLSLSAGQTTLSRERWLRAKQLESLRRTRLQ 632
>CJ119_MOUSE (Q8R3C0) Protein C10orf119 homolog| Length = 642 Score = 82.4 bits (202), Expect = 1e-15 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 11/166 (6%) Frame = -2 Query: 617 LASKGVENTVLLKNLMESQMVEYDFEYYKLEMATDVQLLTLSEGKSNILPSDLVVPFRPS 438 L + GV N L NL+ Q V+YDF Y+++E ++ +L SEG+S +LP+D + +P Sbjct: 468 LDTPGVHNVTALSNLITWQKVDYDFSYHQMEFPCNINVLITSEGRS-LLPADCQIHLQPQ 526 Query: 437 TVSE----------VNATSEELESWRWYLATVRSLPQSSEPEIYQTIQDEMVSAMRND-R 291 + L +R YL +R L + +I + ++D+ V ++D + Sbjct: 527 LIPPNMEEYMNGLLSAVLPSVLNKFRIYLTLLRFLDYNLSDDITKAVEDDFVEMRKDDPQ 586 Query: 290 SLGCTELSRWLTMAQITASSFGEKSLSLEHWQMVKELERLRKERMQ 153 S+ +L + L +A+ + S G+ +LS E W K+LE RK R+Q Sbjct: 587 SITADDLHQLLVVARFLSLSVGQTTLSRERWLRAKQLELSRKARLQ 632
>SYV_PSYAR (Q4FQL0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 984 Score = 31.2 bits (69), Expect = 2.5 Identities = 23/99 (23%), Positives = 44/99 (44%) Frame = -2 Query: 551 YDFEYYKLEMATDVQLLTLSEGKSNILPSDLVVPFRPSTVSEVNATSEELESWRWYLATV 372 +DF Y+L ++ L+ + + ++ILP+ V P + + T + + A Sbjct: 305 HDFNDYELGRRHELPLINILDAHAHILPAMEVYPDLQTREPTLETTPADYAGLERFAARK 364 Query: 371 RSLPQSSEPEIYQTIQDEMVSAMRNDRSLGCTELSRWLT 255 + Q+ E + I+D + A R +R G + WLT Sbjct: 365 LLVEQAGEQGWLEKIEDYALKAPRAER--GGAIVEPWLT 401
>PGKH_ARATH (P50318) Phosphoglycerate kinase, chloroplast precursor (EC| 2.7.2.3) Length = 478 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Frame = -2 Query: 566 SQMVEYDFEYYKLEMATDVQLLTLSEGKSNILPSDLVV--PFRPSTVSEVNATSEELESW 393 S +VE D KLE+AT++ ++G S +LP+D+VV F P S++ S + W Sbjct: 312 SSLVEED----KLELATELLAKAKAKGVSLLLPTDVVVADKFAPDANSKIVPASGIEDGW 367
>PGKH_TOBAC (Q42961) Phosphoglycerate kinase, chloroplast precursor (EC| 2.7.2.3) Length = 481 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -2 Query: 566 SQMVEYDFEYYKLEMATDVQLLTLSEGKSNILPSDLVV--PFRPSTVSEVNATSEELESW 393 S +VE D KLE+AT + ++G S +LPSD+V+ F P S++ S + W Sbjct: 314 SSLVEED----KLELATSLLEKAKAKGVSLLLPSDVVIADKFAPDANSKIVPASAIPDGW 369
>PGKH_WHEAT (P12782) Phosphoglycerate kinase, chloroplast precursor (EC| 2.7.2.3) Length = 480 Score = 30.4 bits (67), Expect = 4.3 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = -2 Query: 566 SQMVEYDFEYYKLEMATDVQLLTLSEGKSNILPSDLVV--PFRPSTVSEVNATSEELESW 393 S +VE D KLE+AT + ++G S +LPSD+++ F P S+ S + W Sbjct: 311 SSLVEED----KLELATSLLAKAKAKGVSLLLPSDVIIADKFAPDANSQTVPASAIPDGW 366
>POLG_HCVJ6 (P26660) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 30.4 bits (67), Expect = 4.3 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 14/73 (19%) Frame = +2 Query: 353 MTEEETSLWPSTISSSQVPQKLHSPQ--------------KQWMDEKAQPSLKAGCWISP 490 M EE + L PS S +P+K P + W QP+ AGC + P Sbjct: 2258 MVEERSDLEPSIPSEYMLPKKRFPPALPAWARPDYNPPLVESWKRPDYQPATVAGCALPP 2317 Query: 491 PRE*VAAHPWPSP 529 P++ P P P Sbjct: 2318 PKK----TPTPPP 2326
>LRSM1_MOUSE (Q80ZI6) Ubiquitin ligase protein LRSAM1 (EC 6.3.2.-) (Leucine-rich| repeat and sterile alpha motif-containing protein 1) (Tsg101-associated ligase) Length = 727 Score = 30.0 bits (66), Expect = 5.7 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 11/113 (9%) Frame = -2 Query: 440 STVSEVNATSEELESWRWY-------LATVRSLPQSSEPEIYQTIQDEMVSAMRNDRSLG 282 S+++E++ +++ SW+ S+ Q + E Q +D M +RN L Sbjct: 419 SSMAEMDKRFQQILSWQQMDQNKAISQILQESVMQKAAFEALQVKKDLMHRQIRNQIRLI 478 Query: 281 CTELSRWLTMAQITASSFGEKSL----SLEHWQMVKELERLRKERMQ*EDTSH 135 TEL + LT ++ S ++L S + W + L++L KE+ Q E+ H Sbjct: 479 ETELLQ-LTQLELKRKSLDTETLQEMVSEQRWALSNLLQQLLKEKKQREEELH 530
>YYY5_HUMAN (Q04762) Very very hypothetical protein CMAR| Length = 142 Score = 29.3 bits (64), Expect = 9.7 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 3/92 (3%) Frame = +2 Query: 272 VQCNPSSCRCAWH*PFHLGSSGK---SQVQMTEEETSLWPSTISSSQVPQKLHSPQKQWM 442 +Q +P SCRC P GS G S ++ E L P+ +SSS + P+ Sbjct: 39 LQTDPCSCRCLHDRPSSCGSLGMLRGSDMKGPCEPIVLSPAALSSSSLINGPVRPRHWAP 98 Query: 443 DEKAQPSLKAGCWISPPRE*VAAHPWPSPACS 538 ++ P W + W S ACS Sbjct: 99 EDSPLPPAAMWTWCK-----LRTSCWSSHACS 125
>PGKH_VOLCA (Q9SBN4) Phosphoglycerate kinase, chloroplast precursor (EC| 2.7.2.3) Length = 462 Score = 29.3 bits (64), Expect = 9.7 Identities = 23/87 (26%), Positives = 39/87 (44%) Frame = -2 Query: 566 SQMVEYDFEYYKLEMATDVQLLTLSEGKSNILPSDLVVPFRPSTVSEVNATSEELESWRW 387 S +VE D KLE+A +++ + ++G +LPSD+VV + + S E W Sbjct: 301 SSLVEED----KLELAKNLEAIAKAKGVQLLLPSDVVVADKFDANANTQTVSVEAIPDGW 356 Query: 386 YLATVRSLPQSSEPEIYQTIQDEMVSA 306 + P+ +T QD + A Sbjct: 357 -------MGLDIGPDSIKTFQDALADA 376 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,254,107 Number of Sequences: 219361 Number of extensions: 1723906 Number of successful extensions: 4701 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4562 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4694 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
