| Clone Name | rbags27p18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108419.1| Zea mays PCO089499 mRNA sequence Length = 1147 Score = 416 bits (210), Expect = e-113 Identities = 402/466 (86%) Strand = Plus / Minus Query: 148 tctcattgcatcctctcctttcgaagcctctcaagctccttcaccatctgccagtgctcc 207 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 964 tctcattgcatcctctgctttctaagcctctcaagctccttcaccatctgccagtgctcc 905 Query: 208 agggaaaggctcttctcaccaaagcttgaggctgttatctgagccattgttagccacctg 267 | ||||| |||||||| |||||||| ||||| |||| || |||||||||||||| ||| Sbjct: 904 aaagaaagactcttctcgccaaagctggaggccattatttgtgccattgttagccatctg 845 Query: 268 ctaagttcagtgcaacccaagctcctgtcgttgcgcatggcactgaccatttcatcttgg 327 |||||||||| |||||||||||||| || | ||||||||||||||||||||||| || Sbjct: 844 ctaagttcagaacaacccaagctcctatcatcacgcatggcactgaccatttcatcctga 785 Query: 328 atcgtctggtaaatctcaggttcagatgactgaggaagagacctcactgtggccaagtac 387 ||| |||||||| | |||||||||| ||||||||||||||||| ||||||| ||| || Sbjct: 784 atcatctggtaagtttcaggttcagtggactgaggaagagaccttactgtggtcaaaaac 725 Query: 388 catctccagctctcaagttcctcagaagttgcattcacctcagaaacagtggatggacga 447 || |||||||||||| |||||||| | |||||| || | ||||| |||||| || Sbjct: 724 cacctccagctctcagtttcctcagcacctgcattaactgtgggaacagaggatggccgg 665 Query: 448 aaaggcacaaccaagtctgaaggcaggatgttggatttcccctccgagagagtaagtagc 507 |||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| |||||| Sbjct: 664 aaaggcactaccaaatctgaaggaaggatgtttgatttcccctcagagagagtgagtagc 605 Query: 508 tgcacatccgtggccatctccagcttgtagtactcaaaatcatactcaaccatctgtgac 567 |||||||| | ||||| ||||||||||||||||||||||| || |||||| |||| ||| Sbjct: 604 tgcacatcagctgccatttccagcttgtagtactcaaaatcgtagtcaaccttctgcgac 545 Query: 568 tccatcaagttcttaagcagcaccgtattctcaacacctttagatg 613 ||||||| |||||| ||||||| |||||||| |||||||| |||| Sbjct: 544 tccatcaggttcttgagcagcatggtattctccacacctttggatg 499
>ref|XM_550253.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2029 Score = 408 bits (206), Expect = e-111 Identities = 401/466 (86%) Strand = Plus / Minus Query: 148 tctcattgcatcctctcctttcgaagcctctcaagctccttcaccatctgccagtgctcc 207 |||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct: 1874 tctcattgtagcctctccttcctgagcctctccagctccttcaccatctgccagtgctcc 1815 Query: 208 agggaaaggctcttctcaccaaagcttgaggctgttatctgagccattgttagccacctg 267 | ||| || ||||||||||||||||||| || ||||||| ||||| |||||||| ||| Sbjct: 1814 atggagagactcttctcaccaaagcttgcagccattatctgtgccatcgttagccatctg 1755 Query: 268 ctaagttcagtgcaacccaagctcctgtcgttgcgcatggcactgaccatttcatcttgg 327 |||||||||| |||||||||||||| || | ||||||||| |||||||||||||||| Sbjct: 1754 ctaagttcagaacaacccaagctcctatcatcacgcatggcattgaccatttcatcttga 1695 Query: 328 atcgtctggtaaatctcaggttcagatgactgaggaagagacctcactgtggccaagtac 387 ||| ||||||| | |||| ||||| |||||||||||||||||| ||||||||||| ||| Sbjct: 1694 atcatctggtatgtatcagtttcagttgactgaggaagagacctaactgtggccaaatac 1635 Query: 388 catctccagctctcaagttcctcagaagttgcattcacctcagaaacagtggatggacga 447 |||||||| || ||||||||||| || ||||||| ||| ||| ||||| ||||| || Sbjct: 1634 catctccaactttcaagttcctcggagcttgcatttaccgcaggaacagatgatgggcgg 1575 Query: 448 aaaggcacaaccaagtctgaaggcaggatgttggatttcccctccgagagagtaagtagc 507 ||||| || | |||||| ||||| ||||| || ||||| ||||| |||||| | |||||| Sbjct: 1574 aaaggtactatcaagtcagaaggtaggatatttgattttccctcggagagaattagtagc 1515 Query: 508 tgcacatccgtggccatctccagcttgtagtactcaaaatcatactcaaccatctgtgac 567 |||||||| || ||||| |||| ||||||| |||||||||||||||||||| |||||||| Sbjct: 1514 tgcacatcagttgccatttccaacttgtagaactcaaaatcatactcaaccttctgtgac 1455 Query: 568 tccatcaagttcttaagcagcaccgtattctcaacacctttagatg 613 |||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 1454 tccatcaagttcttaagcagcatagtattctcgacacctttggatg 1409
>dbj|AK099378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067O18, full insert sequence Length = 2029 Score = 408 bits (206), Expect = e-111 Identities = 401/466 (86%) Strand = Plus / Minus Query: 148 tctcattgcatcctctcctttcgaagcctctcaagctccttcaccatctgccagtgctcc 207 |||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct: 1874 tctcattgtagcctctccttcctgagcctctccagctccttcaccatctgccagtgctcc 1815 Query: 208 agggaaaggctcttctcaccaaagcttgaggctgttatctgagccattgttagccacctg 267 | ||| || ||||||||||||||||||| || ||||||| ||||| |||||||| ||| Sbjct: 1814 atggagagactcttctcaccaaagcttgcagccattatctgtgccatcgttagccatctg 1755 Query: 268 ctaagttcagtgcaacccaagctcctgtcgttgcgcatggcactgaccatttcatcttgg 327 |||||||||| |||||||||||||| || | ||||||||| |||||||||||||||| Sbjct: 1754 ctaagttcagaacaacccaagctcctatcatcacgcatggcattgaccatttcatcttga 1695 Query: 328 atcgtctggtaaatctcaggttcagatgactgaggaagagacctcactgtggccaagtac 387 ||| ||||||| | |||| ||||| |||||||||||||||||| ||||||||||| ||| Sbjct: 1694 atcatctggtatgtatcagtttcagttgactgaggaagagacctaactgtggccaaatac 1635 Query: 388 catctccagctctcaagttcctcagaagttgcattcacctcagaaacagtggatggacga 447 |||||||| || ||||||||||| || ||||||| ||| ||| ||||| ||||| || Sbjct: 1634 catctccaactttcaagttcctcggagcttgcatttaccgcaggaacagatgatgggcgg 1575 Query: 448 aaaggcacaaccaagtctgaaggcaggatgttggatttcccctccgagagagtaagtagc 507 ||||| || | |||||| ||||| ||||| || ||||| ||||| |||||| | |||||| Sbjct: 1574 aaaggtactatcaagtcagaaggtaggatatttgattttccctcggagagaattagtagc 1515 Query: 508 tgcacatccgtggccatctccagcttgtagtactcaaaatcatactcaaccatctgtgac 567 |||||||| || ||||| |||| ||||||| |||||||||||||||||||| |||||||| Sbjct: 1514 tgcacatcagttgccatttccaacttgtagaactcaaaatcatactcaaccttctgtgac 1455 Query: 568 tccatcaagttcttaagcagcaccgtattctcaacacctttagatg 613 |||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 1454 tccatcaagttcttaagcagcatagtattctcgacacctttggatg 1409
>dbj|AK073783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H14, full insert sequence Length = 2029 Score = 408 bits (206), Expect = e-111 Identities = 401/466 (86%) Strand = Plus / Minus Query: 148 tctcattgcatcctctcctttcgaagcctctcaagctccttcaccatctgccagtgctcc 207 |||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct: 1874 tctcattgtagcctctccttcctgagcctctccagctccttcaccatctgccagtgctcc 1815 Query: 208 agggaaaggctcttctcaccaaagcttgaggctgttatctgagccattgttagccacctg 267 | ||| || ||||||||||||||||||| || ||||||| ||||| |||||||| ||| Sbjct: 1814 atggagagactcttctcaccaaagcttgcagccattatctgtgccatcgttagccatctg 1755 Query: 268 ctaagttcagtgcaacccaagctcctgtcgttgcgcatggcactgaccatttcatcttgg 327 |||||||||| |||||||||||||| || | ||||||||| |||||||||||||||| Sbjct: 1754 ctaagttcagaacaacccaagctcctatcatcacgcatggcattgaccatttcatcttga 1695 Query: 328 atcgtctggtaaatctcaggttcagatgactgaggaagagacctcactgtggccaagtac 387 ||| ||||||| | |||| ||||| |||||||||||||||||| ||||||||||| ||| Sbjct: 1694 atcatctggtatgtatcagtttcagttgactgaggaagagacctaactgtggccaaatac 1635 Query: 388 catctccagctctcaagttcctcagaagttgcattcacctcagaaacagtggatggacga 447 |||||||| || ||||||||||| || ||||||| ||| ||| ||||| ||||| || Sbjct: 1634 catctccaactttcaagttcctcggagcttgcatttaccgcaggaacagatgatgggcgg 1575 Query: 448 aaaggcacaaccaagtctgaaggcaggatgttggatttcccctccgagagagtaagtagc 507 ||||| || | |||||| ||||| ||||| || ||||| ||||| |||||| | |||||| Sbjct: 1574 aaaggtactatcaagtcagaaggtaggatatttgattttccctcggagagaattagtagc 1515 Query: 508 tgcacatccgtggccatctccagcttgtagtactcaaaatcatactcaaccatctgtgac 567 |||||||| || ||||| |||| ||||||| |||||||||||||||||||| |||||||| Sbjct: 1514 tgcacatcagttgccatttccaacttgtagaactcaaaatcatactcaaccttctgtgac 1455 Query: 568 tccatcaagttcttaagcagcaccgtattctcaacacctttagatg 613 |||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 1454 tccatcaagttcttaagcagcatagtattctcgacacctttggatg 1409
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 174 bits (88), Expect = 2e-40 Identities = 184/216 (85%) Strand = Plus / Plus Query: 343 tcaggttcagatgactgaggaagagacctcactgtggccaagtaccatctccagctctca 402 |||| ||||| |||||||||||||||||| ||||||||||| ||||||||||| || ||| Sbjct: 3425372 tcagtttcagttgactgaggaagagacctaactgtggccaaataccatctccaactttca 3425431 Query: 403 agttcctcagaagttgcattcacctcagaaacagtggatggacgaaaaggcacaaccaag 462 |||||||| || ||||||| ||| ||| ||||| ||||| || ||||| || | |||| Sbjct: 3425432 agttcctcggagcttgcatttaccgcaggaacagatgatgggcggaaaggtactatcaag 3425491 Query: 463 tctgaaggcaggatgttggatttcccctccgagagagtaagtagctgcacatccgtggcc 522 || ||||| ||||| || ||||| ||||| |||||| | |||||||||||||| || ||| Sbjct: 3425492 tcagaaggtaggatatttgattttccctcggagagaattagtagctgcacatcagttgcc 3425551 Query: 523 atctccagcttgtagtactcaaaatcatactcaacc 558 || |||| ||||||| |||||||||||||||||||| Sbjct: 3425552 atttccaacttgtagaactcaaaatcatactcaacc 3425587 Score = 113 bits (57), Expect = 7e-22 Identities = 105/121 (86%) Strand = Plus / Plus Query: 148 tctcattgcatcctctcctttcgaagcctctcaagctccttcaccatctgccagtgctcc 207 |||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct: 3424949 tctcattgtagcctctccttcctgagcctctccagctccttcaccatctgccagtgctcc 3425008 Query: 208 agggaaaggctcttctcaccaaagcttgaggctgttatctgagccattgttagccacctg 267 | ||| || ||||||||||||||||||| || ||||||| ||||| |||||||| ||| Sbjct: 3425009 atggagagactcttctcaccaaagcttgcagccattatctgtgccatcgttagccatctg 3425068 Query: 268 c 268 | Sbjct: 3425069 c 3425069 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 560 tctgtgactccatcaagttcttaagcagcaccgtattctcaacacctttagatg 613 |||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 3425671 tctgtgactccatcaagttcttaagcagcatagtattctcgacacctttggatg 3425724 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 262 cacctgctaagttcagtgcaacccaagctcctgtcgttgcgcatggcactgaccatttca 321 |||||||||||||||| |||||||||||||| || | ||||||||| ||||||||||| Sbjct: 3425188 cacctgctaagttcagaacaacccaagctcctatcatcacgcatggcattgaccatttca 3425247 Query: 322 tcttg 326 ||||| Sbjct: 3425248 tcttg 3425252
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 174 bits (88), Expect = 2e-40 Identities = 184/216 (85%) Strand = Plus / Plus Query: 343 tcaggttcagatgactgaggaagagacctcactgtggccaagtaccatctccagctctca 402 |||| ||||| |||||||||||||||||| ||||||||||| ||||||||||| || ||| Sbjct: 103742 tcagtttcagttgactgaggaagagacctaactgtggccaaataccatctccaactttca 103801 Query: 403 agttcctcagaagttgcattcacctcagaaacagtggatggacgaaaaggcacaaccaag 462 |||||||| || ||||||| ||| ||| ||||| ||||| || ||||| || | |||| Sbjct: 103802 agttcctcggagcttgcatttaccgcaggaacagatgatgggcggaaaggtactatcaag 103861 Query: 463 tctgaaggcaggatgttggatttcccctccgagagagtaagtagctgcacatccgtggcc 522 || ||||| ||||| || ||||| ||||| |||||| | |||||||||||||| || ||| Sbjct: 103862 tcagaaggtaggatatttgattttccctcggagagaattagtagctgcacatcagttgcc 103921 Query: 523 atctccagcttgtagtactcaaaatcatactcaacc 558 || |||| ||||||| |||||||||||||||||||| Sbjct: 103922 atttccaacttgtagaactcaaaatcatactcaacc 103957 Score = 113 bits (57), Expect = 7e-22 Identities = 105/121 (86%) Strand = Plus / Plus Query: 148 tctcattgcatcctctcctttcgaagcctctcaagctccttcaccatctgccagtgctcc 207 |||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct: 103319 tctcattgtagcctctccttcctgagcctctccagctccttcaccatctgccagtgctcc 103378 Query: 208 agggaaaggctcttctcaccaaagcttgaggctgttatctgagccattgttagccacctg 267 | ||| || ||||||||||||||||||| || ||||||| ||||| |||||||| ||| Sbjct: 103379 atggagagactcttctcaccaaagcttgcagccattatctgtgccatcgttagccatctg 103438 Query: 268 c 268 | Sbjct: 103439 c 103439 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 560 tctgtgactccatcaagttcttaagcagcaccgtattctcaacacctttagatg 613 |||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 104041 tctgtgactccatcaagttcttaagcagcatagtattctcgacacctttggatg 104094 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 262 cacctgctaagttcagtgcaacccaagctcctgtcgttgcgcatggcactgaccatttca 321 |||||||||||||||| |||||||||||||| || | ||||||||| ||||||||||| Sbjct: 103558 cacctgctaagttcagaacaacccaagctcctatcatcacgcatggcattgaccatttca 103617 Query: 322 tcttg 326 ||||| Sbjct: 103618 tcttg 103622
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 174 bits (88), Expect = 2e-40 Identities = 184/216 (85%) Strand = Plus / Plus Query: 343 tcaggttcagatgactgaggaagagacctcactgtggccaagtaccatctccagctctca 402 |||| ||||| |||||||||||||||||| ||||||||||| ||||||||||| || ||| Sbjct: 12132 tcagtttcagttgactgaggaagagacctaactgtggccaaataccatctccaactttca 12191 Query: 403 agttcctcagaagttgcattcacctcagaaacagtggatggacgaaaaggcacaaccaag 462 |||||||| || ||||||| ||| ||| ||||| ||||| || ||||| || | |||| Sbjct: 12192 agttcctcggagcttgcatttaccgcaggaacagatgatgggcggaaaggtactatcaag 12251 Query: 463 tctgaaggcaggatgttggatttcccctccgagagagtaagtagctgcacatccgtggcc 522 || ||||| ||||| || ||||| ||||| |||||| | |||||||||||||| || ||| Sbjct: 12252 tcagaaggtaggatatttgattttccctcggagagaattagtagctgcacatcagttgcc 12311 Query: 523 atctccagcttgtagtactcaaaatcatactcaacc 558 || |||| ||||||| |||||||||||||||||||| Sbjct: 12312 atttccaacttgtagaactcaaaatcatactcaacc 12347 Score = 113 bits (57), Expect = 7e-22 Identities = 105/121 (86%) Strand = Plus / Plus Query: 148 tctcattgcatcctctcctttcgaagcctctcaagctccttcaccatctgccagtgctcc 207 |||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct: 11709 tctcattgtagcctctccttcctgagcctctccagctccttcaccatctgccagtgctcc 11768 Query: 208 agggaaaggctcttctcaccaaagcttgaggctgttatctgagccattgttagccacctg 267 | ||| || ||||||||||||||||||| || ||||||| ||||| |||||||| ||| Sbjct: 11769 atggagagactcttctcaccaaagcttgcagccattatctgtgccatcgttagccatctg 11828 Query: 268 c 268 | Sbjct: 11829 c 11829 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 560 tctgtgactccatcaagttcttaagcagcaccgtattctcaacacctttagatg 613 |||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 12431 tctgtgactccatcaagttcttaagcagcatagtattctcgacacctttggatg 12484 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 262 cacctgctaagttcagtgcaacccaagctcctgtcgttgcgcatggcactgaccatttca 321 |||||||||||||||| |||||||||||||| || | ||||||||| ||||||||||| Sbjct: 11948 cacctgctaagttcagaacaacccaagctcctatcatcacgcatggcattgaccatttca 12007 Query: 322 tcttg 326 ||||| Sbjct: 12008 tcttg 12012
>emb|CR762392.5| Zebrafish DNA sequence from clone DKEY-265A11 in linkage group 8, complete sequence Length = 203490 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 213 aaggctcttctcaccaaagctt 234 |||||||||||||||||||||| Sbjct: 86757 aaggctcttctcaccaaagctt 86778
>dbj|AP000874.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-760N9, complete sequences Length = 150638 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 206 ccagggaaaggctcttctcacc 227 |||||||||||||||||||||| Sbjct: 146999 ccagggaaaggctcttctcacc 147020
>ref|NM_122961.2| Arabidopsis thaliana unknown protein AT5G35700 mRNA, complete cds Length = 2564 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 tctcaagttcctcagaagttg 418 ||||||||||||||||||||| Sbjct: 1720 tctcaagttcctcagaagttg 1700
>ref|NM_115022.3| Arabidopsis thaliana WNK5 AT3G51630 (WNK5) mRNA, complete cds Length = 2499 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctcaagctccttcaccatct 196 ||||||||||||||||||||| Sbjct: 1721 tctcaagctccttcaccatct 1701
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tctcattgcatcctctccttt 168 ||||||||||||||||||||| Sbjct: 207861 tctcattgcatcctctccttt 207881
>emb|AL358612.9| Human DNA sequence from clone RP11-435M3 on chromosome 10 Contains the 5' end of the MYO3A gene for myosin IIIA, a novel gene and a CpG island, complete sequence Length = 174021 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 gtcttctcattgcatcctctc 164 ||||||||||||||||||||| Sbjct: 112579 gtcttctcattgcatcctctc 112559
>gb|AY142570.1| Arabidopsis thaliana putative fimbrin protein (At5g35700) mRNA, complete cds Length = 2095 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 tctcaagttcctcagaagttg 418 ||||||||||||||||||||| Sbjct: 1518 tctcaagttcctcagaagttg 1498
>gb|AY045780.1| Arabidopsis thaliana putative fimbrin protein (At5g35700) mRNA, complete cds Length = 2475 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 tctcaagttcctcagaagttg 418 ||||||||||||||||||||| Sbjct: 1721 tctcaagttcctcagaagttg 1701
>emb|AL132968.1|ATT18N14 Arabidopsis thaliana DNA chromosome 3, BAC clone T18N14 Length = 79867 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctcaagctccttcaccatct 196 ||||||||||||||||||||| Sbjct: 32615 tctcaagctccttcaccatct 32595
>emb|CR762390.5| Zebrafish DNA sequence from clone DKEY-204L11 in linkage group 5, complete sequence Length = 167774 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 attagaaggaaatatacacat 87 ||||||||||||||||||||| Sbjct: 98689 attagaaggaaatatacacat 98709
>gb|AY056061.1| Arabidopsis thaliana AT3g51630/T18N14_10 mRNA, complete cds Length = 1068 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctcaagctccttcaccatct 196 ||||||||||||||||||||| Sbjct: 559 tctcaagctccttcaccatct 539
>gb|AF367253.1|AF367253 Arabidopsis thaliana AT3g51630/T18N14_10 mRNA, complete cds Length = 2586 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctcaagctccttcaccatct 196 ||||||||||||||||||||| Sbjct: 1808 tctcaagctccttcaccatct 1788
>emb|BX822224.1|CNS0A4RC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB20ZG11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2314 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctcaagctccttcaccatct 196 ||||||||||||||||||||| Sbjct: 1717 tctcaagctccttcaccatct 1697
>gb|AC141001.6| Homo sapiens X BAC RP11-1051N9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 49724 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 tgcattcacctcagaaacagt 437 ||||||||||||||||||||| Sbjct: 17185 tgcattcacctcagaaacagt 17165
>dbj|AB084269.1| Arabidopsis thaliana WNK5 mRNA for Ser/Thr kinase, complete cds Length = 1644 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctcaagctccttcaccatct 196 ||||||||||||||||||||| Sbjct: 1135 tctcaagctccttcaccatct 1115
>ref|XM_238555.3| PREDICTED: Rattus norvegicus NCK interacting protein with SH3 domain (predicted) (Nckipsd_predicted), mRNA Length = 3019 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 tgactgaggaagagacctcac 374 ||||||||||||||||||||| Sbjct: 2219 tgactgaggaagagacctcac 2239
>dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1 Length = 87210 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 tctcaagttcctcagaagttg 418 ||||||||||||||||||||| Sbjct: 19563 tctcaagttcctcagaagttg 19583
>emb|AJ234484.1|HVU234484 Hordeum vulgare genomic DNA fragment; clone MWG0526.uni Length = 560 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 ctattagaaggaaatatacac 85 ||||||||||||||||||||| Sbjct: 498 ctattagaaggaaatatacac 518
>emb|AJ238802.1|ATH238802 Arabidopsis thaliana mRNA for putative MAP kinase (clones 179D10T7, G8H8T7) Length = 2471 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctcaagctccttcaccatct 196 ||||||||||||||||||||| Sbjct: 1714 tctcaagctccttcaccatct 1694
>gb|AC116136.9| Mus musculus chromosome 5, clone RP23-116G17, complete sequence Length = 212184 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tcagatgactgaggaagaga 368 |||||||||||||||||||| Sbjct: 52691 tcagatgactgaggaagaga 52710
>ref|XM_474434.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 642 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 agtagctgcacatccgtggc 521 |||||||||||||||||||| Sbjct: 93 agtagctgcacatccgtggc 112
>ref|XM_868792.1| PREDICTED: Bos taurus hypothetical protein LOC616698 (LOC616698), mRNA Length = 1071 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 tccagggaaaggctcttctcacca 228 ||||| |||||||||||||||||| Sbjct: 897 tccagagaaaggctcttctcacca 920
>gb|AC165327.4| Mus musculus chromosome 19, clone RP24-318N5, complete sequence Length = 191038 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tcagatgactgaggaagaga 368 |||||||||||||||||||| Sbjct: 125979 tcagatgactgaggaagaga 125998
>gb|AC025794.9| Mus musculus chromosome 19, clone RP23-62O7, complete sequence Length = 242418 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 ctcaaccatctgtgactcca 571 |||||||||||||||||||| Sbjct: 95500 ctcaaccatctgtgactcca 95519
>gb|AC166937.2| Mus musculus BAC clone RP24-121A12 from chromosome 10, complete sequence Length = 183115 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 ctcaaccatctgtgactcca 571 |||||||||||||||||||| Sbjct: 40020 ctcaaccatctgtgactcca 40001
>gb|AC163393.6| Mus musculus chromosome 15, clone RP24-224P8, complete sequence Length = 167152 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 20707 tgtcttctcattgcatcctc 20726
>ref|XM_542237.2| PREDICTED: Canis familiaris similar to Probable endonuclease KIAA0830 precursor (LOC485119), mRNA Length = 2823 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tctcaagctccttcaccatc 195 |||||||||||||||||||| Sbjct: 1444 tctcaagctccttcaccatc 1425
>ref|XM_760887.1| Theileria parva strain Muguga chromosome 1 glycyl-tRNA synthetase (TP01_0460) partial mRNA Length = 2625 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 aaaatcatactcaaccatct 562 |||||||||||||||||||| Sbjct: 1870 aaaatcatactcaaccatct 1889
>gb|AC091507.2| Sus scrofa clone RP44-397B10, complete sequence Length = 174031 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 tcctcagaagttgcattcac 425 |||||||||||||||||||| Sbjct: 85350 tcctcagaagttgcattcac 85331
>gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, complete sequence Length = 215356 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 tcagatgactgaggaagaga 368 |||||||||||||||||||| Sbjct: 211837 tcagatgactgaggaagaga 211818
>emb|CR522882.5| Zebrafish DNA sequence from clone CH211-209M4 in linkage group 15, complete sequence Length = 129430 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ttagaaggaaatatacacat 87 |||||||||||||||||||| Sbjct: 129129 ttagaaggaaatatacacat 129110
>gb|AC107742.10| Mus musculus chromosome 15, clone RP23-331D7, complete sequence Length = 223952 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 198690 tgtcttctcattgcatcctc 198709
>emb|AL513211.15| Human DNA sequence from clone RP13-476E20 on chromosome 6 Contains a novel gene, the 5' end of the LRRC1 gene for leucine rich repeat containing 1 and a CpG island, complete sequence Length = 126228 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tctccagctctcaagttcct 409 |||||||||||||||||||| Sbjct: 88776 tctccagctctcaagttcct 88757
>emb|AL357274.9| Human DNA sequence from clone RP11-685P13 on chromosome 6, complete sequence Length = 133565 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 acccaagtcttgatgattttagac 63 ||||||||||| |||||||||||| Sbjct: 33257 acccaagtcttcatgattttagac 33280
>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12, complete sequence Length = 144670 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 agtagctgcacatccgtggc 521 |||||||||||||||||||| Sbjct: 95097 agtagctgcacatccgtggc 95078
>emb|AL645909.11| Mouse DNA sequence from clone RP23-216O18 on chromosome 11 Contains the Lcp2 gene for lymphocyte cytosolic protein 2, the 5' end of a novel gene and a novel gene, complete sequence Length = 186087 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 ctcaaccatctgtgactcca 571 |||||||||||||||||||| Sbjct: 12040 ctcaaccatctgtgactcca 12021
>gb|AC157802.8| Mus musculus chromosome 1, clone RP24-297D18, complete sequence Length = 154309 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 aaagcttgaggctgttatct 247 |||||||||||||||||||| Sbjct: 35147 aaagcttgaggctgttatct 35166
>dbj|AK124303.1| Homo sapiens cDNA FLJ42310 fis, clone TRACH2007733 Length = 2688 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 875 tgtcttctcattgcatcctc 894
>gb|AC025178.8| Homo sapiens chromosome 5 clone CTD-2152M20, complete sequence Length = 134995 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 23062 tgtcttctcattgcatcctc 23081
>gb|AC090531.18| Homo sapiens 12q BAC RP11-413B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 204468 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 11061 tgtcttctcattgcatcctc 11080
>gb|AC105415.2| Homo sapiens BAC clone RP11-265O12 from 4, complete sequence Length = 185848 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 20194 tgtcttctcattgcatcctc 20213
>gb|AC011744.8| Homo sapiens BAC clone RP11-324I10 from 4, complete sequence Length = 191596 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 61272 tgtcttctcattgcatcctc 61291
>gb|AC005629.2| Homo sapiens PAC clone RP5-1093I16 from 1, complete sequence Length = 105643 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 30632 tgtcttctcattgcatcctc 30613
>gb|AC152413.5| Mus musculus BAC clone RP23-431A21 from chromosome 10, complete sequence Length = 195951 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 ctcaaccatctgtgactcca 571 |||||||||||||||||||| Sbjct: 94782 ctcaaccatctgtgactcca 94801
>emb|BX663513.13| Zebrafish DNA sequence from clone DKEY-234F12 in linkage group 15, complete sequence Length = 249413 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ttagaaggaaatatacacat 87 |||||||||||||||||||| Sbjct: 247715 ttagaaggaaatatacacat 247734
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 agtagctgcacatccgtggc 521 |||||||||||||||||||| Sbjct: 35158600 agtagctgcacatccgtggc 35158581
>gb|AC116050.3| Homo sapiens BAC clone RP11-427F2 from 2, complete sequence Length = 165225 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 98720 tgtcttctcattgcatcctc 98701
>gb|AC006453.3| Homo sapiens PAC clone RP4-614C10 from 2, complete sequence Length = 155313 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 21182 tgtcttctcattgcatcctc 21163
>gb|AC145614.3| Homo sapiens chromosome UNKNOWN clone RP11-1210E1, complete sequence Length = 188052 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 125659 tgtcttctcattgcatcctc 125640
>gb|AC144898.3| Homo sapiens chromosome UNKNOWN clone RP11-247L13, complete sequence Length = 155112 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tgtcttctcattgcatcctc 162 |||||||||||||||||||| Sbjct: 88571 tgtcttctcattgcatcctc 88552
>gb|AY570726.1| Oryza sativa (japonica cultivar-group) inorganic pyrophosphatase (Ipp) mRNA, partial cds Length = 721 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 agtagctgcacatccgtggc 521 |||||||||||||||||||| Sbjct: 184 agtagctgcacatccgtggc 203
>dbj|BS000102.1| Pan troglodytes chromosome 22 clone:RP43-107D21, map 22, complete sequences Length = 65478 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gaaatatacacatcagagca 94 |||||||||||||||||||| Sbjct: 52080 gaaatatacacatcagagca 52099
>dbj|AK073929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073D22, full insert sequence Length = 938 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 agtagctgcacatccgtggc 521 |||||||||||||||||||| Sbjct: 186 agtagctgcacatccgtggc 205
>dbj|AK061239.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-C05, full insert sequence Length = 935 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 agtagctgcacatccgtggc 521 |||||||||||||||||||| Sbjct: 184 agtagctgcacatccgtggc 203
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 agtagctgcacatccgtggc 521 |||||||||||||||||||| Sbjct: 27857 agtagctgcacatccgtggc 27838
>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gaaatatacacatcagagca 94 |||||||||||||||||||| Sbjct: 87364 gaaatatacacatcagagca 87383
>emb|AL691469.9| Mouse DNA sequence from clone RP23-248F18 on chromosome 2, complete sequence Length = 191923 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 ctcaaccatctgtgactcca 571 |||||||||||||||||||| Sbjct: 36512 ctcaaccatctgtgactcca 36531
>dbj|AP001340.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B2289H10, LL56-APP region, complete sequence Length = 58771 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gaaatatacacatcagagca 94 |||||||||||||||||||| Sbjct: 24173 gaaatatacacatcagagca 24192 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,555,863 Number of Sequences: 3902068 Number of extensions: 5555863 Number of successful extensions: 103329 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103166 Number of HSP's gapped (non-prelim): 163 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)