>GAG_FSVHZ (P04322) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30] (Fragment)
          Length = 414

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 303 RKSTWVAPCDAVWLCHSLDGPHRANSELDKLNMNENKQWA 184
           RK  WV  C+A W+  ++  P      LD ++  E K +A
Sbjct: 105 RKKKWVTLCEAEWVMMNVGWPREGTFSLDNISQVEKKIFA 144

>GAG_FSVGR (P03339) Core protein p15|
          Length = 117

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 303 RKSTWVAPCDAVWLCHSLDGPHRANSELDKLNMNENKQWA 184
           RK  W+  C+A W+  ++  P      LD ++  E K +A
Sbjct: 30  RKKKWITLCEAEWVMMNVGWPREGTFSLDNISQVEKKIFA 69

>GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 580

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 303 RKSTWVAPCDAVWLCHSLDGPHRANSELDKLNMNENKQWA 184
           RK  W+  C+A W+  ++  P      LD ++  E K +A
Sbjct: 105 RKKKWITLCEAEWVMMNVGWPREGTFSLDNISQVEKKIFA 144

>GAG_FSVGA (P03337) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30]
          Length = 425

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 303 RKSTWVAPCDAVWLCHSLDGPHRANSELDKLNMNENKQWA 184
           RK  W+  C+A W+  ++  P      LD ++  E K +A
Sbjct: 108 RKKKWITLCEAEWVMMNVGWPREGTFSLDNISQVEKKIFA 147

>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640|
          Length = 1069

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 456 PFPKPFQESRYVCRERGPSPINRISPYVGI*HASLPTP 343
           P P P Q   Y   +RGPSP++R  P  G+     P P
Sbjct: 65  PQPFPQQSPSYGAPQRGPSPMSRPGPPAGMARPGGPPP 102

>VE2_HPV15 (P36784) Regulatory protein E2|
          Length = 382

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -3

Query: 470 TTNQSHSRSRFKNQDMCAERGAPPRSIASPLMSGSSTRRSPRLAAAATGSIH*AIDE 300
           T +QS S SR +++     RG+ PR   SP   GSS R    L    TG +   ++E
Sbjct: 242 TRSQSKSLSRSRSRSKSRSRGSSPRGGISPADVGSSVR---SLGRKHTGRLERLLEE 295

>SOX13_MOUSE (Q04891) SOX-13 protein|
          Length = 985

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 407 APPRSIASPLMSGSSTRRSPRLAAAATGS 321
           APP+  ASP  SGS   + P  + AA+GS
Sbjct: 45  APPQDCASPESSGSPEPKRPAASEAASGS 73

>GLYK_ARATH (Q944I4) D-glycerate 3-kinase, chloroplast precursor (EC 2.7.1.31)|
           (AtGLYK)
          Length = 456

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 2   EYIHTHNGMARTXSKLPTTATLDASLYSTD*YEALRSG 115
           +Y  T NG ++  S LPTT T+D S  S D +E + SG
Sbjct: 96  DYATTTNGTSKRCSALPTTNTVDVSSVS-DLFEFICSG 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,305,367
Number of Sequences: 219361
Number of extensions: 1691532
Number of successful extensions: 3639
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3639
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)