ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28e18 |
|---|---|
| Clone Library Name | barley_pub |
>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375| Length = 606 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/66 (40%), Positives = 36/66 (54%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLV 422 I++P + + G GG L IR SGA I I D ++SGT +QM A +LV Sbjct: 540 ILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENLV 599 Query: 421 QAFVLS 404 QAFV+S Sbjct: 600 QAFVMS 605
>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC| stretch-binding protein) (CSBP) Length = 463 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/61 (39%), Positives = 36/61 (59%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLV 422 + +P+ + ++ G G + IR SGA I IDEPL S D + I+GT DQ+ A+ L+ Sbjct: 392 VTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL 451 Query: 421 Q 419 Q Sbjct: 452 Q 452
>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| Length = 463 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/61 (39%), Positives = 36/61 (59%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLV 422 + +P+ + ++ G G + IR SGA I IDEPL S D + I+GT DQ+ A+ L+ Sbjct: 392 VTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL 451 Query: 421 Q 419 Q Sbjct: 452 Q 452
>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K| Length = 463 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/61 (39%), Positives = 36/61 (59%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLV 422 + +P+ + ++ G G + IR SGA I IDEPL S D + I+GT DQ+ A+ L+ Sbjct: 392 VTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL 451 Query: 421 Q 419 Q Sbjct: 452 Q 452
>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| (Transformation up-regulated nuclear protein) (TUNP) Length = 463 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/61 (39%), Positives = 36/61 (59%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLV 422 + +P+ + ++ G G + IR SGA I IDEPL S D + I+GT DQ+ A+ L+ Sbjct: 392 VTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL 451 Query: 421 Q 419 Q Sbjct: 452 Q 452
>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/67 (32%), Positives = 36/67 (53%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLV 422 + +P +I + G G +N IR+ SGA+I I S + + I+GTP + A+ L+ Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325 Query: 421 QAFVLSE 401 A + SE Sbjct: 326 NARLTSE 332 Score = 38.1 bits (87), Expect = 0.020 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Frame = -1 Query: 589 RLIIPA-----LCGHDGGCLNMIREFSGAKITI-DEPLADSMDTPVMISGTPDQMHAARS 428 RL++PA L G G + IRE +GA++ + + L +S + V ISGTPD + Sbjct: 101 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVK 160 Query: 427 LVQAFVLSEPP 395 + +L PP Sbjct: 161 QICVVMLESPP 171
>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/67 (32%), Positives = 36/67 (53%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLV 422 + +P +I + G G +N IR+ SGA+I I S + + I+GTP + A+ L+ Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325 Query: 421 QAFVLSE 401 A + SE Sbjct: 326 NARLTSE 332 Score = 38.1 bits (87), Expect = 0.020 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Frame = -1 Query: 589 RLIIPA-----LCGHDGGCLNMIREFSGAKITI-DEPLADSMDTPVMISGTPDQMHAARS 428 RL++PA L G G + IRE +GA++ + + L +S + V ISGTPD + Sbjct: 101 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVK 160 Query: 427 LVQAFVLSEPP 395 + +L PP Sbjct: 161 QICVVMLESPP 171
>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 37.7 bits (86), Expect = 0.026 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 10/81 (12%) Frame = -1 Query: 607 GNIMVP----RLIIPA-----LCGHDGGCLNMIREFSGAKITI-DEPLADSMDTPVMISG 458 GN+ P RL+IPA L G G + IRE +GA++ + + L +S + V +SG Sbjct: 95 GNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154 Query: 457 TPDQMHAARSLVQAFVLSEPP 395 PD + + A +L PP Sbjct: 155 VPDAIILCVRQICAVILESPP 175 Score = 33.9 bits (76), Expect = 0.38 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = -1 Query: 598 MVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLVQ 419 +VP +I + G G ++ IR+ SGA I I + + V I+G+P + A+ L+ Sbjct: 247 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLIT 306 Query: 418 A 416 A Sbjct: 307 A 307
>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 36.6 bits (83), Expect = 0.058 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Frame = -1 Query: 589 RLIIPA-----LCGHDGGCLNMIREFSGAKITI-DEPLADSMDTPVMISGTPDQMHAARS 428 RL+IPA L G G + IRE +GA++ + + L +S + V +SG PD + Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVR 164 Query: 427 LVQAFVLSEPP 395 + A +L PP Sbjct: 165 QICAVILESPP 175 Score = 33.9 bits (76), Expect = 0.38 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = -1 Query: 598 MVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLVQ 419 +VP +I + G G ++ IR+ SGA I I + + V I+G+P + A+ L+ Sbjct: 247 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLIT 306 Query: 418 A 416 A Sbjct: 307 A 307
>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) (DNA helicase V) (HDH V) Length = 643 Score = 36.2 bits (82), Expect = 0.076 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = -1 Query: 595 VPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLVQA 416 VP ++ + G G ++ I++ SG KI I + M++GTP+ + +A+ L+ Sbjct: 106 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 165 Query: 415 FVLSEPPAP 389 V PAP Sbjct: 166 IVEKGRPAP 174 Score = 30.8 bits (68), Expect = 3.2 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITI--DEPLADSMDTPVMISGTPDQMHAARS 428 IM+P + G G + ++E +G K+ + D P D P+ I+G P ++ A+ Sbjct: 189 IMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKE 248 Query: 427 LV 422 +V Sbjct: 249 MV 250
>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) Length = 651 Score = 36.2 bits (82), Expect = 0.076 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = -1 Query: 595 VPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQMHAARSLVQA 416 VP ++ + G G ++ I++ SG KI I + M++GTP+ + +A+ L+ Sbjct: 103 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 162 Query: 415 FVLSEPPAP 389 V PAP Sbjct: 163 IVEKGRPAP 171 Score = 30.8 bits (68), Expect = 3.2 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITI--DEPLADSMDTPVMISGTPDQMHAARS 428 IM+P + G G + ++E +G K+ + D P D P+ I+G P ++ A+ Sbjct: 186 IMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKE 245 Query: 427 LV 422 +V Sbjct: 246 MV 247
>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative| heterogeneous nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP) Length = 362 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Frame = -1 Query: 589 RLIIPAL-CGH---DGGC-LNMIREFSGAKITI-DEPLADSMDTPVMISGTPDQMHAARS 428 RL++PA CG GGC + IRE +GA++ + + L +S + + I+G P + Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVK 160 Query: 427 LVQAFVLSEPP 395 + +L PP Sbjct: 161 QICVVMLESPP 171
>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein| Length = 560 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -1 Query: 595 VPRLIIPALCGHDGGCLNMIREFSGAKITID-EPLADSMDTPVMISGTPDQMHAARSLVQ 419 VP+ + + G G + +R+ +GA+I +D E + D + ++ISG P Q+ A++ + Sbjct: 59 VPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGD--ERVLLISGFPVQVCKAKAAIH 116 Query: 418 AFVLSEPP 395 + P Sbjct: 117 QILTENTP 124 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADS--MDTPVMISGTPDQMHAARS 428 + VP+ + + G G + I + SGAKIT D+ + + + ISGT ++ AA+ Sbjct: 129 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKH 188 Query: 427 LV 422 L+ Sbjct: 189 LI 190
>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein| Length = 606 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -1 Query: 595 VPRLIIPALCGHDGGCLNMIREFSGAKITID-EPLADSMDTPVMISGTPDQMHAARSLVQ 419 VP+ + + G G + +R+ +GA+I +D E + D + ++ISG P Q+ A++ + Sbjct: 59 VPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGD--ERVLLISGFPVQVCKAKAAIH 116 Query: 418 AFVLSEPP 395 + P Sbjct: 117 QILTENTP 124 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADS--MDTPVMISGTPDQMHAARS 428 + VP+ + + G G + I + SGAKIT D+ + + + ISGT ++ AA+ Sbjct: 129 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKH 188 Query: 427 LV 422 L+ Sbjct: 189 LI 190
>OMTA_ASPFL (P55790) Sterigmatocystin 8-O-methyltransferase precursor (EC| 2.1.1.110) Length = 418 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Frame = -1 Query: 595 VPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQM--HAARSLV 422 VP L+ AL D CL + + I +D P S+DT V +G + + R Sbjct: 72 VPWLLSNALSHLDSACLAAATQLNLQDIIVDGPSPTSLDTIVTATGVSEDLLRRILRGCA 131 Query: 421 QAFVLSE 401 Q F+ E Sbjct: 132 QRFIFEE 138
>SMUG1_XENLA (Q9YGN6) Single-strand selective monofunctional uracil DNA| glycosylase (EC 3.2.2.-) Length = 281 Score = 30.4 bits (67), Expect = 4.2 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -2 Query: 444 CMQPEVLFKHLF*VNHLPHEFQISEG-DASPSDI 346 C QPE FKH F NH P F G + +P+D+ Sbjct: 160 CGQPETFFKHCFVHNHCPLIFMNHSGKNLTPTDL 193
>ZFNL3_ORYSA (Q5NAV3) Zinc finger CCCH type domain-containing protein ZFN-like 3| Length = 466 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 261 IQTQIMLLASLPSMQTASPGRMISPEGSKYQK-GMHHLQRFETHGAGGSLRTN 416 ++ + +L + Q+ASPG P G+ + H L R +T GAGG + T+ Sbjct: 410 LRPEYLLTKEFSANQSASPGTTCGPAGAMLKAYAPHMLIRPQTSGAGGMVTTH 462
>OMTA_ASPPA (Q12120) Sterigmatocystin 8-O-methyltransferase precursor (EC| 2.1.1.110) Length = 418 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Frame = -1 Query: 595 VPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLADSMDTPVMISGTPDQM--HAARSLV 422 VP L+ AL D CL + I +D P S+DT V +G + + R Sbjct: 72 VPWLLSNALSHLDSACLAAATHLNLQDIIVDGPSPTSLDTIVAATGVSEDLLRRILRGCA 131 Query: 421 QAFVLSE 401 Q F+ E Sbjct: 132 QRFIFEE 138
>NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncological ventral| antigen 2) (Astrocytic NOVA1-like RNA-binding protein) Length = 492 Score = 30.4 bits (67), Expect = 4.2 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Frame = -1 Query: 601 IMVPRLIIPALCGHDGGCLNMIREFSGAKITIDEPLA--DSMDTPVMISGTPDQMHAARS 428 ++VP + G G + + E SGA + + + + + V +SG P+Q+H A S Sbjct: 135 LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVS 194 Query: 427 LVQAFVLSEP 398 + V +P Sbjct: 195 AIVQKVQEDP 204
>HIS4_PELLD (Q3B287) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 256 Score = 30.0 bits (66), Expect = 5.4 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = -1 Query: 586 LIIPALCGHDGGCLNMIR-EFSGAKITIDEPL 494 LIIPA+ DG C+ + R +FS KI +D PL Sbjct: 2 LIIPAIDIKDGKCVRLTRGDFSQQKIYLDNPL 33
>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 29.6 bits (65), Expect = 7.1 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 6/55 (10%) Frame = -1 Query: 589 RLIIPAL-CGH---DGGC-LNMIREFSGAKITI-DEPLADSMDTPVMISGTPDQM 443 RL++PA CG GGC + IRE +GA++ + + L +S + + I+G P + Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSV 155
>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 29.6 bits (65), Expect = 7.1 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 6/55 (10%) Frame = -1 Query: 589 RLIIPAL-CGH---DGGC-LNMIREFSGAKITI-DEPLADSMDTPVMISGTPDQM 443 RL++PA CG GGC + IRE +GA++ + + L +S + + I+G P + Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSV 155
>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic| acid-binding protein SUB2.3) Length = 356 Score = 29.6 bits (65), Expect = 7.1 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 6/55 (10%) Frame = -1 Query: 589 RLIIPAL-CGH---DGGC-LNMIREFSGAKITI-DEPLADSMDTPVMISGTPDQM 443 RL++PA CG GGC + IRE +GA++ + + L +S + + I+G P + Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSV 155
>RF1_THETN (Q8RD98) Peptide chain release factor 1 (RF-1)| Length = 356 Score = 29.3 bits (64), Expect = 9.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 345 KYQKGMHHLQRFETHGAGGSLRTNA*T 425 KY+ G+H +QR T AGG + T+ T Sbjct: 174 KYESGVHRVQRIPTTEAGGRIHTSTAT 200 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,294,218 Number of Sequences: 219361 Number of extensions: 1825709 Number of successful extensions: 4920 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4804 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4913 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
