ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27p08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genom... 137 5e-29
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 137 5e-29
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 137 5e-29
4gb|AY108493.1| Zea mays PCO117005 mRNA sequence 131 3e-27
5gb|BT013109.1| Lycopersicon esculentum clone 114395R, mRNA sequence 64 6e-07
6gb|AC146571.13| Medicago truncatula clone mth2-104a2, complete s... 56 1e-04
7gb|AC135319.28| Medicago truncatula clone mth2-6g4, complete seq... 56 1e-04
8gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome... 54 5e-04
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
10dbj|AK059663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
11emb|CT030165.7| M.truncatula DNA sequence from clone MTH2-150K22... 54 5e-04
12ref|XM_475894.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
13emb|AJ851476.1| Gallus gallus mRNA for hypothetical protein, clo... 52 0.002
14ref|NM_001012533.1| Gallus gallus chaperonin containing TCP1, su... 52 0.002
15gb|AY880346.1| Gekko japonicus GekBS115P mRNA, complete cds 50 0.008
16gb|S81278.1| 28S rRNA {3' region, intergenic and untranscribed s... 46 0.13
17gb|AC113011.9| Mus musculus chromosome 16, clone RP23-173D22, co... 44 0.52
18emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chro... 44 0.52
19gb|AC127262.3| Mus musculus BAC clone RP24-326H8 from chromosome... 42 2.1
20gb|AF098985.2| Caenorhabditis elegans cosmid C08G5, complete seq... 42 2.1
21dbj|AK036703.1| Mus musculus adult male bone cDNA, RIKEN full-le... 42 2.1
22dbj|AK035692.1| Mus musculus adult male urinary bladder cDNA, RI... 42 2.1
23dbj|AK028720.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 42 2.1
24emb|BX005424.10| Zebrafish DNA sequence from clone DKEY-3N22 in ... 42 2.1
25emb|CT030730.7| Mouse DNA sequence from clone RP24-252L17 on chr... 42 2.1
26gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 8.2
27gb|AE010389.1| Methanopyrus kandleri AV19 section 88 of 157 of t... 40 8.2
28ref|NM_003143.1| Homo sapiens single-stranded DNA binding protei... 40 8.2
29gb|BC000895.1| Homo sapiens single-stranded DNA binding protein ... 40 8.2
30gb|AC107505.6| Rattus norvegicus 18 BAC CH230-129O15 (Children's... 40 8.2
31emb|Z50745.1|MKDNATHS M.kandleri DNA for ths gene 40 8.2
32emb|CR857853.1| Pongo pygmaeus mRNA; cDNA DKFZp469M1528 (from cl... 40 8.2
33dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 8.2
34gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.2
35gb|AC111220.6| Rattus norvegicus Chr BAC CH230-122K11 (Children'... 40 8.2
36dbj|AK052152.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 8.2
37gb|AF277319.1|AF277319 Homo sapiens single-stranded DNA-binding ... 40 8.2
38gb|AC012459.7| Homo sapiens BAC clone RP11-527G2 from 2, complet... 40 8.2
39gb|BC093054.1| Homo sapiens single-stranded DNA binding protein ... 40 8.2
40gb|AC097227.3| Papio anubis clone RP41-327F23, complete sequence 40 8.2
41emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on ch... 40 8.2
42gb|M94556.1|HUMMTSSB Human mitochondrial specific single strande... 40 8.2 
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
              sequence
          Length = 154558

 Score =  137 bits (69), Expect = 5e-29
 Identities = 88/93 (94%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                          
Query: 486    ttgtggtgctcagctcggagctgggagatcaagctcggcactatccaggccagcattatc 545
              ||||||||||||||||||||||| ||||||| |||| ||||| ||||| |||||||||||
Sbjct: 134101 ttgtggtgctcagctcggagctgagagatca-gctcagcactgtccagaccagcattatc 134043

                                               
Query: 546    agctatgattgttgggatggcttgcagggcacg 578
              |||||||||||||||||||||||||||||||||
Sbjct: 134042 agctatgattgttgggatggcttgcagggcacg 134010



 Score =  105 bits (53), Expect = 2e-19
 Identities = 122/145 (84%)
 Strand = Plus / Minus

                                                                          
Query: 297    atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 356
              |||||||||| |||||||||||||| ||||| || ||||||||||| || ||||| || |
Sbjct: 134369 atcacatcctatcctctctcctgcgtggggcacaagttatgatctcatcaaccctgagaa 134310

                                                                          
Query: 357    tcatctccgcagcctcggtcgcggacaggacgattgcctgcttcaccttgaacgcctcgc 416
              ||||||| || |||||||| ||||| || | ||| || |||||||||||||| |||||  
Sbjct: 134309 tcatctcagccgcctcggtggcggagagaaggatggcttgcttcaccttgaaggcctccg 134250

                                       
Query: 417    agataccacgcttctgcatgtctcc 441
              | || || ||||| |||||||||||
Sbjct: 134249 atatgcctcgcttttgcatgtctcc 134225
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 5e-29
 Identities = 88/93 (94%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                            
Query: 486      ttgtggtgctcagctcggagctgggagatcaagctcggcactatccaggccagcattatc 545
                ||||||||||||||||||||||| ||||||| |||| ||||| ||||| |||||||||||
Sbjct: 23297620 ttgtggtgctcagctcggagctgagagatca-gctcagcactgtccagaccagcattatc 23297562

                                                 
Query: 546      agctatgattgttgggatggcttgcagggcacg 578
                |||||||||||||||||||||||||||||||||
Sbjct: 23297561 agctatgattgttgggatggcttgcagggcacg 23297529



 Score =  105 bits (53), Expect = 2e-19
 Identities = 122/145 (84%)
 Strand = Plus / Minus

                                                                            
Query: 297      atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 356
                |||||||||| |||||||||||||| ||||| || ||||||||||| || ||||| || |
Sbjct: 23297888 atcacatcctatcctctctcctgcgtggggcacaagttatgatctcatcaaccctgagaa 23297829

                                                                            
Query: 357      tcatctccgcagcctcggtcgcggacaggacgattgcctgcttcaccttgaacgcctcgc 416
                ||||||| || |||||||| ||||| || | ||| || |||||||||||||| |||||  
Sbjct: 23297828 tcatctcagccgcctcggtggcggagagaaggatggcttgcttcaccttgaaggcctccg 23297769

                                         
Query: 417      agataccacgcttctgcatgtctcc 441
                | || || ||||| |||||||||||
Sbjct: 23297768 atatgcctcgcttttgcatgtctcc 23297744
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 5e-29
 Identities = 88/93 (94%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                            
Query: 486      ttgtggtgctcagctcggagctgggagatcaagctcggcactatccaggccagcattatc 545
                ||||||||||||||||||||||| ||||||| |||| ||||| ||||| |||||||||||
Sbjct: 23290648 ttgtggtgctcagctcggagctgagagatca-gctcagcactgtccagaccagcattatc 23290590

                                                 
Query: 546      agctatgattgttgggatggcttgcagggcacg 578
                |||||||||||||||||||||||||||||||||
Sbjct: 23290589 agctatgattgttgggatggcttgcagggcacg 23290557



 Score =  105 bits (53), Expect = 2e-19
 Identities = 122/145 (84%)
 Strand = Plus / Minus

                                                                            
Query: 297      atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 356
                |||||||||| |||||||||||||| ||||| || ||||||||||| || ||||| || |
Sbjct: 23290916 atcacatcctatcctctctcctgcgtggggcacaagttatgatctcatcaaccctgagaa 23290857

                                                                            
Query: 357      tcatctccgcagcctcggtcgcggacaggacgattgcctgcttcaccttgaacgcctcgc 416
                ||||||| || |||||||| ||||| || | ||| || |||||||||||||| |||||  
Sbjct: 23290856 tcatctcagccgcctcggtggcggagagaaggatggcttgcttcaccttgaaggcctccg 23290797

                                         
Query: 417      agataccacgcttctgcatgtctcc 441
                | || || ||||| |||||||||||
Sbjct: 23290796 atatgcctcgcttttgcatgtctcc 23290772
to top
>gb|AY108493.1| Zea mays PCO117005 mRNA sequence
          Length = 926

 Score =  131 bits (66), Expect = 3e-27
 Identities = 102/114 (89%)
 Strand = Plus / Minus

                                                                       
Query: 297 atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 356
           |||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 607 atcacatcctatcctctcttctgcgcggggcacaggttatgatctcatcgaccctgagga 548

                                                                 
Query: 357 tcatctccgcagcctcggtcgcggacaggacgattgcctgcttcaccttgaacg 410
           |||||||||||||||| || || ||||| |  || |||||||||||||||||||
Sbjct: 547 tcatctccgcagcctctgttgcagacagaagaatggcctgcttcaccttgaacg 494



 Score =  103 bits (52), Expect = 7e-19
 Identities = 94/107 (87%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                       
Query: 483 tctttgtggtgctcagctcggagctgggagatcaagctcggcactatccaggccagcatt 542
           |||||||||||||||||||| ||||| ||||||||  || || |||||||  ||||||||
Sbjct: 422 tctttgtggtgctcagctcgtagctgagagatcaaa-tcagcgctatccaaaccagcatt 364

                                                          
Query: 543 atcagctatgattgttgggatggcttgcagggcacgcnagaaagcat 589
            ||||||||||||||||||||||||||||| ||| |  |||||||||
Sbjct: 363 gtcagctatgattgttgggatggcttgcagagcatgtgagaaagcat 317
to top
>gb|BT013109.1| Lycopersicon esculentum clone 114395R, mRNA sequence
          Length = 1870

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                        
Query: 309  cctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcaggatcatctccgcag 368
            |||| ||||| || |||||||| || ||||||||||| ||||| ||||||||||| ||||
Sbjct: 1693 cctccctcctccgtggggcgcaagtgatgatctcgtcaacccttaggatcatctcagcag 1634

                
Query: 369  cctc 372
            ||||
Sbjct: 1633 cctc 1630
to top
>gb|AC146571.13| Medicago truncatula clone mth2-104a2, complete sequence
          Length = 140639

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 62/72 (86%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                         
Query: 489   tggtgctcagctcggagctgggagatcaagctcggcactatccaggccagcattatcagc 548
             ||||||||||| |||||||| || ||||| ||| ||||| ||||  ||||||||||||||
Sbjct: 12635 tggtgctcagcgcggagctgagaaatcaa-ctcagcactgtccaaaccagcattatcagc 12693

                         
Query: 549   tatgattgttgg 560
              ||| |||||||
Sbjct: 12694 aatggttgttgg 12705
to top
>gb|AC135319.28| Medicago truncatula clone mth2-6g4, complete sequence
          Length = 120194

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 62/72 (86%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                          
Query: 489    tggtgctcagctcggagctgggagatcaagctcggcactatccaggccagcattatcagc 548
              ||||||||||| |||||||| || ||||| ||| ||||| ||||  ||||||||||||||
Sbjct: 101894 tggtgctcagcgcggagctgagaaatcaa-ctcagcactgtccaaaccagcattatcagc 101952

                          
Query: 549    tatgattgttgg 560
               ||| |||||||
Sbjct: 101953 aatggttgttgg 101964
to top
>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
             complete sequence
          Length = 144601

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                         
Query: 297   atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 356
             |||||||||||||||| || || || || || || || | |||||| |||||||| || |
Sbjct: 63928 atcacatcctgtcctcccttctccgtggagcacaagtgacgatctcatcgaccctgagaa 63869

                                
Query: 357   tcatctccgcagcctcggt 375
             |||||||||| ||||||||
Sbjct: 63868 tcatctccgctgcctcggt 63850
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                            
Query: 297      atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 356
                |||||||||||||||| || || || || || || || | |||||| |||||||| || |
Sbjct: 27467798 atcacatcctgtcctcccttctccgtggagcacaagtgacgatctcatcgaccctgagaa 27467739

                                   
Query: 357      tcatctccgcagcctcggt 375
                |||||||||| ||||||||
Sbjct: 27467738 tcatctccgctgcctcggt 27467720
to top
>dbj|AK059663.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E04, full
           insert sequence
          Length = 1191

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                       
Query: 297 atcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcagga 356
           |||||||||||||||| || || || || || || || | |||||| |||||||| || |
Sbjct: 990 atcacatcctgtcctcccttctccgtggagcacaagtgacgatctcatcgaccctgagaa 931

                              
Query: 357 tcatctccgcagcctcggt 375
           |||||||||| ||||||||
Sbjct: 930 tcatctccgctgcctcggt 912
to top
>emb|CT030165.7| M.truncatula DNA sequence from clone MTH2-150K22 on chromosome 3,
             complete sequence
          Length = 134390

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                         
Query: 489   tggtgctcagctcggagctgggagatcaagctcggcactatccaggccagcattatcagc 548
             ||||||||||| |||||||| || ||||| ||| ||||| ||||  |||||||| |||||
Sbjct: 28267 tggtgctcagcacggagctgagaaatcaa-ctcagcactgtccaaaccagcattgtcagc 28209

                            
Query: 549   tatgattgttgggat 563
              ||| ||||||||||
Sbjct: 28208 aatggttgttgggat 28194



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 62/74 (83%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                         
Query: 489   tggtgctcagctcggagctgggagatcaagctcggcactatccaggccagcattatcagc 548
             ||||||||| | |||||||| || ||||| ||| ||||| ||||  ||||||||||||| 
Sbjct: 34932 tggtgctcatcacggagctgagaaatcaa-ctcagcactgtccaaaccagcattatcagt 34874

                           
Query: 549   tatgattgttggga 562
              ||| |||||||||
Sbjct: 34873 aatggttgttggga 34860
to top
>ref|XM_475894.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 870

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 298 tcacatcctgtcctctctcctgcgcggggcgcaggttatgatctcgtcgaccctcaggat 357
           ||||||||||||||| || || || || || || || | |||||| |||||||| || ||
Sbjct: 870 tcacatcctgtcctcccttctccgtggagcacaagtgacgatctcatcgaccctgagaat 811

                             
Query: 358 catctccgcagcctcggt 375
           ||||||||| ||||||||
Sbjct: 810 catctccgctgcctcggt 793
to top
>emb|AJ851476.1| Gallus gallus mRNA for hypothetical protein, clone 3m3
          Length = 1985

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 534  gccagcattatcagctatgattgttgggat 563
            |||||||||||||||||| |||||||||||
Sbjct: 1440 gccagcattatcagctattattgttgggat 1411
to top
>ref|NM_001012533.1| Gallus gallus chaperonin containing TCP1, subunit 2 (beta) (CCT2),
            mRNA
          Length = 1985

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 534  gccagcattatcagctatgattgttgggat 563
            |||||||||||||||||| |||||||||||
Sbjct: 1440 gccagcattatcagctattattgttgggat 1411
to top
>gb|AY880346.1| Gekko japonicus GekBS115P mRNA, complete cds
          Length = 1782

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 534  gccagcattatcagctatgattgttggga 562
            ||||||||||||||||||||| |||||||
Sbjct: 1419 gccagcattatcagctatgatggttggga 1391
to top
>gb|S81278.1| 28S rRNA {3' region, intergenic and untranscribed spacers} [Astasia
           longa, Genomic, 321 nt]
          Length = 321

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 118 agccgaagccactccctacagaa 140
           |||||||||||||||||||||||
Sbjct: 179 agccgaagccactccctacagaa 157
to top
>gb|AC113011.9| Mus musculus chromosome 16, clone RP23-173D22, complete sequence
          Length = 210962

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 88     tatattttctagtggtaaataactca 113
              |||||||||||| |||||||||||||
Sbjct: 202674 tatattttctagaggtaaataactca 202649
to top
>emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chromosome 16, complete
             sequence
          Length = 197249

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 88    tatattttctagtggtaaataactca 113
             |||||||||||| |||||||||||||
Sbjct: 78408 tatattttctagaggtaaataactca 78383
to top
>gb|AC127262.3| Mus musculus BAC clone RP24-326H8 from chromosome 9, complete sequence
          Length = 181862

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 306    tgtcctctctcctgcgcggggcgca 330
              ||||||||||||||| |||||||||
Sbjct: 100472 tgtcctctctcctgcacggggcgca 100448
to top
>gb|AF098985.2| Caenorhabditis elegans cosmid C08G5, complete sequence
          Length = 40550

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    cacatcactatattttctagt 100
             |||||||||||||||||||||
Sbjct: 19610 cacatcactatattttctagt 19590
to top
>dbj|AK036703.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
           library, clone:9830164O20 product:unclassifiable, full
           insert sequence
          Length = 4188

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 306 tgtcctctctcctgcgcggggcgca 330
           ||||||||||||||| |||||||||
Sbjct: 371 tgtcctctctcctgcacggggcgca 347
to top
>dbj|AK035692.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530091C08
           product:unclassifiable, full insert sequence
          Length = 2058

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 306 tgtcctctctcctgcgcggggcgca 330
           ||||||||||||||| |||||||||
Sbjct: 405 tgtcctctctcctgcacggggcgca 381
to top
>dbj|AK028720.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732444G10 product:unclassifiable, full
            insert sequence
          Length = 3601

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 306  tgtcctctctcctgcgcggggcgca 330
            ||||||||||||||| |||||||||
Sbjct: 1333 tgtcctctctcctgcacggggcgca 1357
to top
>emb|BX005424.10| Zebrafish DNA sequence from clone DKEY-3N22 in linkage group 19,
            complete sequence
          Length = 200523

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 69   gttacaacttacacatcacta 89
            |||||||||||||||||||||
Sbjct: 4757 gttacaacttacacatcacta 4737
to top
>emb|CT030730.7| Mouse DNA sequence from clone RP24-252L17 on chromosome 9, complete
            sequence
          Length = 151456

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 306  tgtcctctctcctgcgcggggcgca 330
            ||||||||||||||| |||||||||
Sbjct: 7519 tgtcctctctcctgcacggggcgca 7495
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    ctcctgcgcggggcgcaggt 333
              ||||||||||||||||||||
Sbjct: 903962 ctcctgcgcggggcgcaggt 903981
to top
>gb|AE010389.1| Methanopyrus kandleri AV19 section 88 of 157 of the complete genome
          Length = 12792

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   caggatcatctccgcagcctcggt 375
             ||||||||||||||| ||||||||
Sbjct: 12643 caggatcatctccgcggcctcggt 12620
to top
>ref|NM_003143.1| Homo sapiens single-stranded DNA binding protein 1 (SSBP1), mRNA
          Length = 628

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 540 attatcagctatgattgttg 559
           ||||||||||||||||||||
Sbjct: 486 attatcagctatgattgttg 467
to top
>gb|BC000895.1| Homo sapiens single-stranded DNA binding protein 1, mRNA (cDNA
           clone MGC:5185 IMAGE:3464282), complete cds
          Length = 1030

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 540 attatcagctatgattgttg 559
           ||||||||||||||||||||
Sbjct: 843 attatcagctatgattgttg 824
to top
>gb|AC107505.6| Rattus norvegicus 18 BAC CH230-129O15 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 219880

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   tgctgttcttctttgtggtg 493
             ||||||||||||||||||||
Sbjct: 36269 tgctgttcttctttgtggtg 36250
to top
>emb|Z50745.1|MKDNATHS M.kandleri DNA for ths gene
          Length = 3605

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 352  caggatcatctccgcagcctcggt 375
            ||||||||||||||| ||||||||
Sbjct: 2035 caggatcatctccgcggcctcggt 2012
to top
>emb|CR857853.1| Pongo pygmaeus mRNA; cDNA DKFZp469M1528 (from clone DKFZp469M1528)
          Length = 663

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 540 attatcagctatgattgttg 559
           ||||||||||||||||||||
Sbjct: 506 attatcagctatgattgttg 487
to top
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 541     ttatcagctatgattgttgggatg 564
               ||||| ||||||||||||||||||
Sbjct: 2007450 ttatctgctatgattgttgggatg 2007473
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 440     cccagcccgccgctgatgacgtcg 463
               ||||||||||||||| ||||||||
Sbjct: 1986972 cccagcccgccgctggtgacgtcg 1986949
to top
>gb|AC111220.6| Rattus norvegicus Chr BAC CH230-122K11 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 237466

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   tgctgttcttctttgtggtg 493
             ||||||||||||||||||||
Sbjct: 24096 tgctgttcttctttgtggtg 24115
to top
>dbj|AK052152.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:D330001E03 product:unclassifiable, full
           insert sequence
          Length = 4323

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 67  aggttacaacttacacatca 86
           ||||||||||||||||||||
Sbjct: 176 aggttacaacttacacatca 157
to top
>gb|AF277319.1|AF277319 Homo sapiens single-stranded DNA-binding protein mRNA, complete cds
          Length = 629

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 540 attatcagctatgattgttg 559
           ||||||||||||||||||||
Sbjct: 487 attatcagctatgattgttg 468
to top
>gb|AC012459.7| Homo sapiens BAC clone RP11-527G2 from 2, complete sequence
          Length = 175554

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    catcctgtcctctctcctgc 320
              ||||||||||||||||||||
Sbjct: 115894 catcctgtcctctctcctgc 115913
to top
>gb|BC093054.1| Homo sapiens single-stranded DNA binding protein 1, mRNA (cDNA
           clone MGC:111135 IMAGE:30722138), complete cds
          Length = 676

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 540 attatcagctatgattgttg 559
           ||||||||||||||||||||
Sbjct: 503 attatcagctatgattgttg 484
to top
>gb|AC097227.3| Papio anubis clone RP41-327F23, complete sequence
          Length = 138345

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    atcccaatagtgctgttctt 483
              ||||||||||||||||||||
Sbjct: 113348 atcccaatagtgctgttctt 113367
to top
>emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on chromosome 13, complete
              sequence
          Length = 225179

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     aggttacaacttacacatca 86
              ||||||||||||||||||||
Sbjct: 133930 aggttacaacttacacatca 133911
to top
>gb|M94556.1|HUMMTSSB Human mitochondrial specific single stranded DNA binding protein
           mRNA, complete cds
          Length = 628

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 540 attatcagctatgattgttg 559
           ||||||||||||||||||||
Sbjct: 486 attatcagctatgattgttg 467


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,949,926
Number of Sequences: 3902068
Number of extensions: 3949926
Number of successful extensions: 69629
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 69404
Number of HSP's gapped (non-prelim): 219
length of query: 600
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 577
effective length of database: 17,143,297,704
effective search space: 9891682775208
effective search space used: 9891682775208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top