>HSF_SCHPO (Q02953) Heat shock factor protein (HSF) (Heat shock transcription|
           factor) (HSTF)
          Length = 609

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +2

Query: 245 TEVPALTRNDLPDPIIARSGVLPTSLHTRSSIDRNSVTTMNTL 373
           T+VP+L R+D  DP +  +G +   L   +SI+ +++ +++ L
Sbjct: 357 TDVPSLNRDDTTDPKVVNTGDIINMLDDANSIEGSNMNSLSPL 399

>PAD5_MOUSE (Q68ED3) PAP associated domain-containing 5 (EC 2.7.7.-)|
           (Topoisomerase-related function protein 4-2) (TRF4-2)
          Length = 633

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -2

Query: 543 QESSGAGFFESMDGFLGRVETEIGSLKMAERGALQRVKETTQYFHGDGNMEEPSQPL 373
           Q  S   F  S  GF G  +T  G+L  +++    + K  TQY+HG     +   PL
Sbjct: 575 QHGSARLFRSSSKGFQGTAQTSHGALMTSKQ---HQGKSNTQYYHGKKRRHKRDAPL 628

>ROUGH_DROME (P10181) Homeobox protein rough|
          Length = 350

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 313 DVPAHAVQYRQELCHHHEHPQRL 381
           D P H  Q  Q+  HHH HP +L
Sbjct: 113 DYPQHPSQQHQQHHHHHHHPPQL 135

>NELFE_MOUSE (P19426) Negative elongation factor E (NELF-E) (RD protein)|
          Length = 375

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = -2

Query: 516 ESMDGFLGRVETEIGSLKMAERGALQRVKETTQYFHGDGNMEEPSQPLRVFMVVTEFLSI 337
           E+ +    R  T  G LK  E+G +   +   +    D +++EPS+  +   +   F+S 
Sbjct: 80  ETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSMSADEDLQEPSRRPQRKSLYESFVSS 139

Query: 336 LDRVCRDVGRTPERA-MMGSGKSFRVSAGTSVPPRRYD 226
            DR+ R++G+  E A   G+G           PPR +D
Sbjct: 140 SDRL-RELGQDGEEAEAPGAGDG---------PPRGFD 167

>UTP20_MOUSE (Q5XG71) Small subunit processome component 20 homolog|
           (Down-regulated in metastasis protein)
          Length = 2788

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = +1

Query: 298 LRRPADVPAHAVQYRQELCHHHEHPQRLRRLLHVAITMEVLRGLLHTLQRAPLRHL 465
           LR+   VPA    YR++L H       LR+L H  +   V +G    LQ  PLR+L
Sbjct: 679 LRQAELVPATVSDYREKLLH-------LRKLRHDVVQGAVPQG---RLQEVPLRYL 724

>DPOLM_HUMAN (Q9NP87) DNA polymerase mu (EC 2.7.7.7) (Pol Mu)|
          Length = 494

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 274 LTGPHHRPLRRPADVPAHAVQYRQELCHHHEHPQRLRRLLHVAITMEVLRGLLHTLQRAP 453
           + GP   PL  PA +PA+A Q    L HH+        +L  A   E   G L T  RA 
Sbjct: 125 VAGPRKGPLS-PAWMPAYACQRPTPLTHHNTGLSEALEILAEAAGFEGSEGRLLTFCRAA 183

Query: 454 --LRHLQAP 474
             L+ L +P
Sbjct: 184 SVLKALPSP 192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,910,393
Number of Sequences: 219361
Number of extensions: 1161624
Number of successful extensions: 3942
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3937
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)