ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27p06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196817.1| Oryza sativa (japonica cultivar-group) unknown ... 272 1e-69
2gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome... 272 1e-69
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
4dbj|AK101916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 1e-69
5dbj|AK102067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 1e-69
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 272 1e-69
7gb|AY110859.1| Zea mays CL41895_1 mRNA sequence 260 5e-66
8emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1-10p1... 58 4e-05
9gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Canc... 44 0.58
10gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complet... 44 0.58
11emb|CR450770.21| Zebrafish DNA sequence from clone DKEY-161M5 in... 42 2.3
12emb|CR847854.12| Zebrafish DNA sequence from clone DKEY-229J6 in... 42 2.3
13emb|AJ627196.1| Nipah virus complete genome, isolate NV/MY/99/VR... 42 2.3
14emb|AJ564623.1|NVI564623 Nipah virus complete genome, isolate NV... 42 2.3
15emb|AJ564622.1|NVI564622 Nipah virus complete genome, isolate NV... 42 2.3
16emb|AJ564621.1|NVI564621 Nipah virus complete genome, isolate NV... 42 2.3
17gb|AF376747.1| Nipah virus nucleocapsid protein (N), V protein (... 42 2.3
18gb|AF212302.2|AF212302 Nipah virus, complete genome 42 2.3
19gb|AY029768.1| Nipah virus isolate UMMC2, complete genome 42 2.3
20gb|AY029767.1| Nipah virus isolate UMMC1, complete genome 42 2.3
21gb|AF238467.1|AF238467 Nipah virus glycoprotein mRNA, complete cds 42 2.3
22gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 42 2.3
23ref|NM_121761.2| Arabidopsis thaliana unknown protein AT5G17550 ... 40 9.0
24gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 40 9.0
25gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, com... 40 9.0
26gb|AC094830.5| Rattus norvegicus 8 BAC CH230-3H18 (Children's Ho... 40 9.0
27gb|AC121943.3| Mus musculus BAC clone RP24-211F3 from chromosome... 40 9.0
28gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, compl... 40 9.0
29gb|AC159168.3| Callicebus moloch clone LB5-83N20, complete sequence 40 9.0
30gb|AY149931.1| Arabidopsis thaliana At5g17550/K10A8_30 mRNA, com... 40 9.0
31emb|AL391151.1|ATK10A8 Arabidopsis thaliana DNA chromosome 5, BA... 40 9.0
32gb|AC008406.7| Homo sapiens chromosome 5 clone CTC-276P9, comple... 40 9.0
33gb|AF329849.1|AF329849 Agrobacterium tumefaciens plasmid pTiAB2/... 40 9.0
34gb|AC146740.3| Callithrix jacchus clone CH259-204H2, complete se... 40 9.0
35gb|AF410297.1|AF410297 Arabidopsis thaliana AT5g17550/K10A8_30 m... 40 9.0
36gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosom... 40 9.0
37gb|AC027305.4|AC027305 Homo sapiens chromosome 5 clone CTB-184C1... 40 9.0
38emb|BX833106.1|CNS0A0I4 Arabidopsis thaliana Full-length cDNA Co... 40 9.0
39gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 40 9.0
40gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complet... 40 9.0
41dbj|AP002451.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.0
42gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 40 9.0
43emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chro... 40 9.0
44emb|AL627214.15| Mouse DNA sequence from clone RP23-357K18 on ch... 40 9.0
45emb|AL844534.4| Mouse DNA sequence from clone RP23-59M10 on chro... 40 9.0 
>ref|NM_196817.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0018F16.3), mRNA
          Length = 2157

 Score =  272 bits (137), Expect = 1e-69
 Identities = 362/437 (82%)
 Strand = Plus / Minus

                                                                        
Query: 224  gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 283
            ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 1905 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1846

                                                                        
Query: 284  cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 343
            ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 1845 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1786

                                                                        
Query: 344  cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 403
             |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 1785 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1726

                                                                        
Query: 404  atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 463
            ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 1725 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1666

                                                                        
Query: 464  tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 523
            ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 1665 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1606

                                                                        
Query: 524  tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 583
            ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 1605 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1546

                                                                        
Query: 584  ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 643
            |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 1545 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1486

                             
Query: 644  aatggcagacacaatct 660
            |||||||||||| ||||
Sbjct: 1485 aatggcagacacgatct 1469
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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score =  272 bits (137), Expect = 1e-69
 Identities = 362/437 (82%)
 Strand = Plus / Minus

                                                                         
Query: 224   gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 283
             ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 42311 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 42252

                                                                         
Query: 284   cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 343
             ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 42251 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 42192

                                                                         
Query: 344   cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 403
              |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 42191 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 42132

                                                                         
Query: 404   atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 463
             ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 42131 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 42072

                                                                         
Query: 464   tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 523
             ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 42071 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 42012

                                                                         
Query: 524   tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 583
             ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 42011 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 41952

                                                                         
Query: 584   ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 643
             |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 41951 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 41892

                              
Query: 644   aatggcagacacaatct 660
             |||||||||||| ||||
Sbjct: 41891 aatggcagacacgatct 41875
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  272 bits (137), Expect = 1e-69
 Identities = 362/437 (82%)
 Strand = Plus / Minus

                                                                            
Query: 224      gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 283
                ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 16163422 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 16163363

                                                                            
Query: 284      cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 343
                ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 16163362 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 16163303

                                                                            
Query: 344      cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 403
                 |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 16163302 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 16163243

                                                                            
Query: 404      atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 463
                ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 16163242 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 16163183

                                                                            
Query: 464      tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 523
                ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 16163182 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 16163123

                                                                            
Query: 524      tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 583
                ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 16163122 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 16163063

                                                                            
Query: 584      ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 643
                |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 16163062 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 16163003

                                 
Query: 644      aatggcagacacaatct 660
                |||||||||||| ||||
Sbjct: 16163002 aatggcagacacgatct 16162986
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>dbj|AK101916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071I02, full
            insert sequence
          Length = 2290

 Score =  272 bits (137), Expect = 1e-69
 Identities = 362/437 (82%)
 Strand = Plus / Minus

                                                                        
Query: 224  gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 283
            ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 2008 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1949

                                                                        
Query: 284  cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 343
            ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 1948 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1889

                                                                        
Query: 344  cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 403
             |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 1888 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1829

                                                                        
Query: 404  atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 463
            ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 1828 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1769

                                                                        
Query: 464  tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 523
            ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 1768 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1709

                                                                        
Query: 524  tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 583
            ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 1708 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1649

                                                                        
Query: 584  ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 643
            |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 1648 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1589

                             
Query: 644  aatggcagacacaatct 660
            |||||||||||| ||||
Sbjct: 1588 aatggcagacacgatct 1572
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>dbj|AK102067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082F19, full
            insert sequence
          Length = 2230

 Score =  272 bits (137), Expect = 1e-69
 Identities = 362/437 (82%)
 Strand = Plus / Minus

                                                                        
Query: 224  gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 283
            ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 1948 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 1889

                                                                        
Query: 284  cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 343
            ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 1888 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 1829

                                                                        
Query: 344  cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 403
             |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 1828 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 1769

                                                                        
Query: 404  atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 463
            ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 1768 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 1709

                                                                        
Query: 464  tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 523
            ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 1708 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 1649

                                                                        
Query: 524  tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 583
            ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 1648 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 1589

                                                                        
Query: 584  ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 643
            |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 1588 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 1529

                             
Query: 644  aatggcagacacaatct 660
            |||||||||||| ||||
Sbjct: 1528 aatggcagacacgatct 1512
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  272 bits (137), Expect = 1e-69
 Identities = 362/437 (82%)
 Strand = Plus / Minus

                                                                            
Query: 224      gcatgtattgacaccatccttgcagtcgcgtgttaggtcattgaatgtctccaacttcct 283
                ||||||||||||||||| |||||| || || || || ||| ||||||||||||| |||||
Sbjct: 16171663 gcatgtattgacaccattcttgcaatcacgagtaagatcactgaatgtctccaatttcct 16171604

                                                                            
Query: 284      cttccccctgaggaacacctcagtgtcgactgcaaccctcatgtaaccatcgaactccac 343
                ||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 16171603 cttcccccgaaggaacacctcagtgtcaactgcaaccctcatgtatccatcgaattcaac 16171544

                                                                            
Query: 344      cggtttgccattgttgagctccttagtttcagcataccagtcactattttcatcccaaag 403
                 |  || |||||| | |||||||| |||||||  ||||| || || || |||||||| | 
Sbjct: 16171543 agcattaccattgctcagctcctttgtttcagtgtaccactcgctgttctcatcccataa 16171484

                                                                            
Query: 404      atccttgaaatcatccaggaaacgcgtcttgtacttgttcttcagcgggtcgaagaacga 463
                ||||||||| |||||||||||  | ||    |||||   |||||  ||||| ||||| ||
Sbjct: 16171483 atccttgaagtcatccaggaagtgtgttcgatacttacccttcattgggtcaaagaatga 16171424

                                                                            
Query: 464      tttatcggactcatcggtagcaatgtacaaataccgtccagcaccaaccttatcattgag 523
                ||||||||  |||| ||| ||||||||||||| ||| |||||||| ||||||||||| ||
Sbjct: 16171423 tttatcgggttcattggttgcaatgtacaaatgccggccagcaccgaccttatcattaag 16171364

                                                                            
Query: 524      tgtcgtaaggagattttctggcgaggtatctgcatcaaggtttggccaaagctgtgtgtt 583
                ||||||||||||| | ||||| || ||||||  |||||| |||||||| | |||| ||||
Sbjct: 16171363 tgtcgtaaggagactatctggagaagtatctctatcaagatttggccacaactgtttgtt 16171304

                                                                            
Query: 584      ctgggctttctctcctctcacaacatgcatcgagtcgaaatcccaactcattcgggaggc 643
                |||||||||||| || ||||||||||| |  || || || ||||||  ||| ||||||| 
Sbjct: 16171303 ctgggctttctcccccctcacaacatggactgaatcaaagtcccaatccatccgggagga 16171244

                                 
Query: 644      aatggcagacacaatct 660
                |||||||||||| ||||
Sbjct: 16171243 aatggcagacacgatct 16171227
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>gb|AY110859.1| Zea mays CL41895_1 mRNA sequence
          Length = 888

 Score =  260 bits (131), Expect = 5e-66
 Identities = 390/478 (81%)
 Strand = Plus / Plus

                                                                       
Query: 183 tcagctcaccttactcaaccaggtattcaggaggaggctgcgcatgtattgacaccatcc 242
           |||||||||||||  | ||||  | ||||||| || |||| ||||||||| || ||||||
Sbjct: 222 tcagctcaccttagcccaccaaatgttcaggaagaagctgagcatgtattcacgccatcc 281

                                                                       
Query: 243 ttgcagtcgcgtgttaggtcattgaatgtctccaacttcctcttccccctgaggaacacc 302
           ||||| || ||||| || || |||||||||||||  | ||||||     | | ||| |||
Sbjct: 282 ttgcaatcacgtgtaagctcgttgaatgtctccacatgcctcttnnnnntcaagaatacc 341

                                                                       
Query: 303 tcagtgtcgactgcaaccctcatgtaaccatcgaactccaccggtttgccattgttgagc 362
           |||||||| ||||||| |||||| || ||||| || || || || |  |||||| | |||
Sbjct: 342 tcagtgtcaactgcaatcctcatatagccatcaaattctactggctgaccattgctcagc 401

                                                                       
Query: 363 tccttagtttcagcataccagtcactattttcatcccaaagatccttgaaatcatccagg 422
           |||||||||||||   |||| |||||||| |||||||| || | |||||||||||| |||
Sbjct: 402 tccttagtttcagtgaaccactcactattctcatcccacaggtacttgaaatcatcaagg 461

                                                                       
Query: 423 aaacgcgtcttgtacttgttcttcagcgggtcgaagaacgatttatcggactcatcggta 482
           ||  | || || ||||| | ||| || ||||  ||||||||||| || |  |||| ||||
Sbjct: 462 aagtgtgttttatacttttccttgagtgggttaaagaacgatttgtcaggttcattggta 521

                                                                       
Query: 483 gcaatgtacaaataccgtccagcaccaaccttatcattgagtgtcgtaaggagattttct 542
           ||||||||||||||||| |||||||||||||||||||| |||| | |||||||| | |||
Sbjct: 522 gcaatgtacaaataccggccagcaccaaccttatcattaagtgccataaggagactgtct 581

                                                                       
Query: 543 ggcgaggtatctgcatcaaggtttggccaaagctgtgtgttctgggctttctctcctctc 602
           || |||||||||   ||||||||||||||||| ||||||||||| |||||||| ||||| 
Sbjct: 582 ggtgaggtatctctgtcaaggtttggccaaagttgtgtgttctgcgctttctcccctctg 641

                                                                     
Query: 603 acaacatgcatcgagtcgaaatcccaactcattcgggaggcaatggcagacacaatct 660
           |||||||| | |||||| || |||||  |||| || |||||||||||||| |||||||
Sbjct: 642 acaacatggaccgagtcaaagtcccagttcatccgtgaggcaatggcagatacaatct 699
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>emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE
          Length = 111128

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 546   gaggtatctgcatcaaggtttggccaaagctgtgtgttctgggctttctctcctctcaca 605
             ||||||| ||||||||| ||||||||||||| | |||||   || || ||||||||||||
Sbjct: 20763 gaggtatgtgcatcaagatttggccaaagctctttgttcctcgccttttctcctctcaca 20704

                  
Query: 606   acatg 610
             |||||
Sbjct: 20703 acatg 20699
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>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152737

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 380   ccagtcactattttcatcccaa 401
             ||||||||||||||||||||||
Sbjct: 94894 ccagtcactattttcatcccaa 94915
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>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence
          Length = 183917

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 380   ccagtcactattttcatcccaa 401
             ||||||||||||||||||||||
Sbjct: 35054 ccagtcactattttcatcccaa 35033
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>emb|CR450770.21| Zebrafish DNA sequence from clone DKEY-161M5 in linkage group 8,
           complete sequence
          Length = 153753

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 42  cgtgaatgaattaagtaaact 62
           |||||||||||||||||||||
Sbjct: 691 cgtgaatgaattaagtaaact 671
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>emb|CR847854.12| Zebrafish DNA sequence from clone DKEY-229J6 in linkage group 8, complete
              sequence
          Length = 155365

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 42     cgtgaatgaattaagtaaact 62
              |||||||||||||||||||||
Sbjct: 149875 cgtgaatgaattaagtaaact 149855
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>emb|AJ627196.1| Nipah virus complete genome, isolate NV/MY/99/VRI-0626
          Length = 18246

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acataacctaaactcaagttc 39
             |||||||||||||||||||||
Sbjct: 11074 acataacctaaactcaagttc 11094
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>emb|AJ564623.1|NVI564623 Nipah virus complete genome, isolate NV/MY/99/UM-0128
          Length = 18246

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acataacctaaactcaagttc 39
             |||||||||||||||||||||
Sbjct: 11074 acataacctaaactcaagttc 11094
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>emb|AJ564622.1|NVI564622 Nipah virus complete genome, isolate NV/MY/99/VRI-1413
          Length = 18246

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acataacctaaactcaagttc 39
             |||||||||||||||||||||
Sbjct: 11074 acataacctaaactcaagttc 11094
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>emb|AJ564621.1|NVI564621 Nipah virus complete genome, isolate NV/MY/99/VRI-2794
          Length = 18246

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acataacctaaactcaagttc 39
             |||||||||||||||||||||
Sbjct: 11074 acataacctaaactcaagttc 11094
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>gb|AF376747.1| Nipah virus nucleocapsid protein (N), V protein (P/V/C), phosphoprotein
             (P/V/C), C protein (P/V/C), matrix protein (M), fusion
             protein (F), and glycoprotein (G) genes, complete cds
          Length = 11200

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acataacctaaactcaagttc 39
             |||||||||||||||||||||
Sbjct: 11019 acataacctaaactcaagttc 11039
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>gb|AF212302.2|AF212302 Nipah virus, complete genome
          Length = 18246

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acataacctaaactcaagttc 39
             |||||||||||||||||||||
Sbjct: 11074 acataacctaaactcaagttc 11094
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>gb|AY029768.1| Nipah virus isolate UMMC2, complete genome
          Length = 18246

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acataacctaaactcaagttc 39
             |||||||||||||||||||||
Sbjct: 11074 acataacctaaactcaagttc 11094
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>gb|AY029767.1| Nipah virus isolate UMMC1, complete genome
          Length = 18246

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acataacctaaactcaagttc 39
             |||||||||||||||||||||
Sbjct: 11074 acataacctaaactcaagttc 11094
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>gb|AF238467.1|AF238467 Nipah virus glycoprotein mRNA, complete cds
          Length = 2546

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 19   acataacctaaactcaagttc 39
            |||||||||||||||||||||
Sbjct: 2365 acataacctaaactcaagttc 2385
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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 331    catcgaactccaccggtttgc 351
              |||||||||||||||||||||
Sbjct: 383400 catcgaactccaccggtttgc 383380
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>ref|NM_121761.2| Arabidopsis thaliana unknown protein AT5G17550 mRNA, complete cds
          Length = 1044

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 aagatccttgaaatcatcca 420
           ||||||||||||||||||||
Sbjct: 145 aagatccttgaaatcatcca 126
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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    atgtctccaacttcctcttc 287
              ||||||||||||||||||||
Sbjct: 138924 atgtctccaacttcctcttc 138943
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>gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, complete sequence
          Length = 238598

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 57     taaactagtgttacaacaaaacaa 80
              |||||||| |||||||||||||||
Sbjct: 107862 taaactagagttacaacaaaacaa 107839
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>gb|AC094830.5| Rattus norvegicus 8 BAC CH230-3H18 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237199

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 557    atcaaggtttggccaaagct 576
              ||||||||||||||||||||
Sbjct: 208196 atcaaggtttggccaaagct 208177
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>gb|AC121943.3| Mus musculus BAC clone RP24-211F3 from chromosome 18, complete sequence
          Length = 172426

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     acataacctaaactcaagtt 38
              ||||||||||||||||||||
Sbjct: 134310 acataacctaaactcaagtt 134329
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>gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, complete sequence
          Length = 206833

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    acataacctaaactcaagtt 38
             ||||||||||||||||||||
Sbjct: 32357 acataacctaaactcaagtt 32376
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>gb|AC159168.3| Callicebus moloch clone LB5-83N20, complete sequence
          Length = 182435

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    atgtctccaacttcctcttc 287
              ||||||||||||||||||||
Sbjct: 118528 atgtctccaacttcctcttc 118547
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>gb|AY149931.1| Arabidopsis thaliana At5g17550/K10A8_30 mRNA, complete cds
          Length = 738

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 aagatccttgaaatcatcca 420
           ||||||||||||||||||||
Sbjct: 72  aagatccttgaaatcatcca 53
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>emb|AL391151.1|ATK10A8 Arabidopsis thaliana DNA chromosome 5, BAC clone K10A8 (ESSA project)
          Length = 43387

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   aagatccttgaaatcatcca 420
             ||||||||||||||||||||
Sbjct: 11605 aagatccttgaaatcatcca 11624
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>gb|AC008406.7| Homo sapiens chromosome 5 clone CTC-276P9, complete sequence
          Length = 178030

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   tctccaacttcctcttcccc 290
             ||||||||||||||||||||
Sbjct: 33537 tctccaacttcctcttcccc 33518
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>gb|AF329849.1|AF329849 Agrobacterium tumefaciens plasmid pTiAB2/73 vir region, complete
             sequence
          Length = 32495

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 279   ttcctcttccccctgaggaacacc 302
             ||||||||||||| ||||||||||
Sbjct: 25787 ttcctcttcccccagaggaacacc 25764
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>gb|AC146740.3| Callithrix jacchus clone CH259-204H2, complete sequence
          Length = 224361

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    atgtctccaacttcctcttc 287
              ||||||||||||||||||||
Sbjct: 138924 atgtctccaacttcctcttc 138943
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>gb|AF410297.1|AF410297 Arabidopsis thaliana AT5g17550/K10A8_30 mRNA, complete cds
          Length = 994

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 aagatccttgaaatcatcca 420
           ||||||||||||||||||||
Sbjct: 145 aagatccttgaaatcatcca 126
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>gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosome 9, complete
           sequence
          Length = 186410

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 57  taaactagtgttacaacaaaacaa 80
           |||||||| |||||||||||||||
Sbjct: 359 taaactagagttacaacaaaacaa 382
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>gb|AC027305.4|AC027305 Homo sapiens chromosome 5 clone CTB-184C17, complete sequence
          Length = 72259

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   tctccaacttcctcttcccc 290
             ||||||||||||||||||||
Sbjct: 67126 tctccaacttcctcttcccc 67145
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>emb|BX833106.1|CNS0A0I4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL34ZD12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1012

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 aagatccttgaaatcatcca 420
           ||||||||||||||||||||
Sbjct: 108 aagatccttgaaatcatcca 89
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>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   atgtctccaacttcctcttc 287
             ||||||||||||||||||||
Sbjct: 22614 atgtctccaacttcctcttc 22633
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>gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complete sequence
          Length = 182776

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    tctccaacttcctcttcccc 290
              ||||||||||||||||||||
Sbjct: 158092 tctccaacttcctcttcccc 158111
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>dbj|AP002451.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-792P2, complete
             sequence
          Length = 50359

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   tgtctccaacttcctcttcc 288
             ||||||||||||||||||||
Sbjct: 39283 tgtctccaacttcctcttcc 39302
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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    atgtctccaacttcctcttc 287
              ||||||||||||||||||||
Sbjct: 118528 atgtctccaacttcctcttc 118547
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>emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chromosome 2, complete
             sequence
          Length = 148202

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 148   ttcaaaaacactctatcaagaataataa 175
             |||||| ||| |||||||||||||||||
Sbjct: 17065 ttcaaatacattctatcaagaataataa 17092
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>emb|AL627214.15| Mouse DNA sequence from clone RP23-357K18 on chromosome 4, complete
             sequence
          Length = 182829

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 581   gttctgggctttctctcctctcac 604
             ||||||||||||||||| ||||||
Sbjct: 18318 gttctgggctttctctcatctcac 18295
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>emb|AL844534.4| Mouse DNA sequence from clone RP23-59M10 on chromosome 2, complete
             sequence
          Length = 107752

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   ggtttgccattgttgagctc 364
             ||||||||||||||||||||
Sbjct: 45761 ggtttgccattgttgagctc 45742


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,453,814
Number of Sequences: 3902068
Number of extensions: 5453814
Number of successful extensions: 106988
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106814
Number of HSP's gapped (non-prelim): 172
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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