ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCT3_SCHPO (O59813) Putative amino-acid permease C794.03 29 5.6
2K1199_HUMAN (Q8WUJ3) Protein KIAA1199 precursor 29 7.3
3COBS_METKA (Q8TUT2) Cobalamin synthase (EC 2.-.-.-) 29 7.3

>YCT3_SCHPO (O59813) Putative amino-acid permease C794.03|
          Length = 554

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
 Frame = -2

Query: 478 NLFVCVVLYNVNAFPIT--------VMFGMCSIF--LFMAAILQRRLMVVADLHKLSTKS 329
           NLF  V+L++  A+P+T        V+FG  +IF  +   +I   R     D  KL + S
Sbjct: 469 NLFTAVILFSPKAYPVTGKNFNYAPVIFGAITIFGLISWLSIPASRWSTFYDASKLDSNS 528

Query: 328 QEMTGEDE 305
            + +  D+
Sbjct: 529 FDDSSSDK 536



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>K1199_HUMAN (Q8WUJ3) Protein KIAA1199 precursor|
          Length = 1361

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 473 VCVCGAXQCECFPYHRHVWHVFNLPLHGGNL 381
           + V G  + +C+PY  H+ + F+    GG++
Sbjct: 498 IIVMGEMEDKCYPYRNHICNFFDFDTFGGHI 528



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>COBS_METKA (Q8TUT2) Cobalamin synthase (EC 2.-.-.-)|
          Length = 241

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 232 GRWSIQSMAYLIR-SRFCW-PFKDLAARLPRSSLVILSRACVGQPQPSAVSARL 387
           G  +I SMA L+  + F W PF+ L      S   +L  A VG+P P++ S R+
Sbjct: 109 GGLAIGSMALLLAVASFGWIPFEVLVPIEVFSRFTVLPMAAVGEPAPASYSGRV 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,545,669
Number of Sequences: 219361
Number of extensions: 1461422
Number of successful extensions: 3056
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3056
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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