>emb|X84308.1|HVLHCA2 H.vulgare mRNA for photosysteme I antenna protein
          Length = 1050

 Score =  125 bits (63), Expect = 2e-26
 Identities = 68/70 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taactcccaacgtgttgcttacttgggggcgaaggcccggaagatggnggcatggccggg 60
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 866 taactcccaacgtgttccttacttgggggcgaaggcccggaagatggtggcatggccggg 807

                     
Query: 61  gtcggcgagg 70
           ||||||||||
Sbjct: 806 gtcggcgagg 797

>emb|X79277.1|LTLHAB L.temulentum lhaB mRNA
          Length = 1026

 Score = 89.7 bits (45), Expect = 8e-16
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                       
Query: 7   ccaacgtgttgcttacttgggggcgaaggcccggaagatggnggcatggccggggtcggc 66
           |||||||| | ||||||||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct: 816 ccaacgtgctccttacttgggggcgaaggccctgaagatggtggcgtggccggggtcggc 757

               
Query: 67  gagg 70
           ||||
Sbjct: 756 gagg 753

>ref|XM_507384.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1062

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 814 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 768

>ref|XM_507383.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1059

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 815 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 769

>ref|XM_507382.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1058

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 817 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 771

>ref|XM_478841.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1047

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 820 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 774

>ref|XM_507381.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1061

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 820 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 774

>ref|XM_507380.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1065

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 821 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 775

>ref|XM_507379.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1069

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 821 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 775

>ref|XM_506426.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
           mRNA
          Length = 1068

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 824 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 778

>dbj|AK119176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F08, full
           insert sequence
          Length = 1088

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 835 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 789

>dbj|AK104651.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B06, full
           insert sequence
          Length = 1069

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 821 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 775

>dbj|AK104608.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C01, full
           insert sequence
          Length = 1065

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 821 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 775

>dbj|AK104283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-H09, full
           insert sequence
          Length = 1080

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 851 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 805

>dbj|AK104177.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D02, full
           insert sequence
          Length = 1058

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 817 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 771

>dbj|AK104127.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E10, full
           insert sequence
          Length = 1061

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 820 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 774

>dbj|AK104016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-G05, full
           insert sequence
          Length = 1062

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 814 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 768

>dbj|AK103966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H03, full
           insert sequence
          Length = 1059

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 815 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 769

>dbj|AK060987.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C01, full
           insert sequence
          Length = 1068

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgag 69
           ||||||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct: 824 ttgggggtgaaggcctggaagatggtggcgtggccggggtcggcgag 778

>gb|AY105356.1| Zea mays PCO075138 mRNA sequence
          Length = 1317

 Score = 58.0 bits (29), Expect = 3e-06
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtcggcgagg 70
           ||||||| ||||||| ||||||||| ||| ||||| ||||||||||||
Sbjct: 967 ttgggggtgaaggcctggaagatggtggcgtggccagggtcggcgagg 920

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 39       ggaagatggnggcatggccggggtcggcgag 69
                ||||||||| ||| |||||||||||||||||
Sbjct: 23305312 ggaagatggtggcgtggccggggtcggcgag 23305282

>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1065_B06
          Length = 113170

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 39    ggaagatggnggcatggccggggtcggcgag 69
             ||||||||| ||| |||||||||||||||||
Sbjct: 60570 ggaagatggtggcgtggccggggtcggcgag 60540

>dbj|AK070051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040A06, full
            insert sequence
          Length = 1646

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 39   ggaagatggnggcatggccggggtcggcgag 69
            ||||||||| ||| |||||||||||||||||
Sbjct: 1095 ggaagatggtggcgtggccggggtcggcgag 1065

>gb|AF010321.1|AF010321 Oryza sativa photosystem I antenna protein (Lhca) mRNA, complete
           cds
          Length = 1066

 Score = 44.1 bits (22), Expect = 0.044
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 23  ttgggggcgaaggcccggaagatggnggcatggccggggtc 63
           ||||||| ||||||| |||| |||| ||| |||||||||||
Sbjct: 794 ttgggggtgaaggcctggaaaatggtggcgtggccggggtc 754

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 49      ggcatggccggggtcggcg 67
               |||||||||||||||||||
Sbjct: 1301317 ggcatggccggggtcggcg 1301335


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 204,619
Number of Sequences: 3902068
Number of extensions: 204619
Number of successful extensions: 13367
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13301
Number of HSP's gapped (non-prelim): 66
length of query: 70
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 49
effective length of database: 17,151,101,840
effective search space: 840403990160
effective search space used: 840403990160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)