ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL7A_ARATH (P49692) 60S ribosomal protein L7a 47 1e-05
2RL7A_ORYSA (P35685) 60S ribosomal protein L7a 46 3e-05

>RL7A_ARATH (P49692) 60S ribosomal protein L7a|
          Length = 257

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = -1

Query: 137 GVMGSKXQAKTKARERLIAKEAAXRMN 57
           G+MGSK QAKTKA+ER+IAKEAA RMN
Sbjct: 231 GIMGSKSQAKTKAKERVIAKEAAQRMN 257



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>RL7A_ORYSA (P35685) 60S ribosomal protein L7a|
          Length = 258

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 22/26 (84%), Positives = 24/26 (92%)
 Frame = -1

Query: 137 GVMGSKXQAKTKARERLIAKEAAXRM 60
           GVMGSK QAKTKARE+L+AKEAA RM
Sbjct: 232 GVMGSKSQAKTKAREKLLAKEAAQRM 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,236,358
Number of Sequences: 219361
Number of extensions: 116808
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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