ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28e09 |
|---|---|
| Clone Library Name | barley_pub |
>RS13_CRIGR (Q9WVH0) 40S ribosomal protein S13| Length = 150 Score = 32.7 bits (73), Expect = 0.24 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K A+DD EQ LA KG Sbjct: 17 YRRSVPTWLKLASDDVKEQIYKLAKKG 43
>DLX3_PLEWA (Q91284) Distal-less-like protein DLX-3| Length = 274 Score = 32.3 bits (72), Expect = 0.32 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -1 Query: 217 HRITHSRYEY-STPTWTKFATDDPNEQWNMLAAKGSATFRPACPYMYPDGGEGWHMAGHL 41 H THS ++Y + +++ + P Q+N+ G T+ P Y Y GG G+ GH Sbjct: 38 HAGTHSPHDYFQSQPYSQPISHYPYHQFNLNGLGGPGTYSPKSEYPY--GGGGYRQYGHY 95 Query: 40 TIP 32 P Sbjct: 96 REP 98
>SOX11_CHICK (P48435) Transcription factor SOX-11| Length = 396 Score = 31.2 bits (69), Expect = 0.71 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = -3 Query: 104 PAGVPLHVP--GRRRGVAHGRPPHHPKEMLLA 15 PA VPLH+ GR+RG GRPP P+ LLA Sbjct: 299 PASVPLHLHLVGRQRG--GGRPPVRPQPQLLA 328
>RS13_XENLA (P49393) 40S ribosomal protein S13| Length = 150 Score = 31.2 bits (69), Expect = 0.71 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +DD EQ LA KG Sbjct: 17 YRRSVPTWLKLTSDDVKEQIYKLAKKG 43
>RS13_RAT (P62278) 40S ribosomal protein S13| Length = 150 Score = 31.2 bits (69), Expect = 0.71 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +DD EQ LA KG Sbjct: 17 YRRSVPTWLKLTSDDVKEQIYKLAKKG 43
>RS13_MOUSE (P62301) 40S ribosomal protein S13| Length = 150 Score = 31.2 bits (69), Expect = 0.71 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +DD EQ LA KG Sbjct: 17 YRRSVPTWLKLTSDDVKEQIYKLAKKG 43
>RS13_HUMAN (P62277) 40S ribosomal protein S13| Length = 150 Score = 31.2 bits (69), Expect = 0.71 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +DD EQ LA KG Sbjct: 17 YRRSVPTWLKLTSDDVKEQIYKLAKKG 43
>RS13_CHICK (Q6ITC7) 40S ribosomal protein S13| Length = 150 Score = 31.2 bits (69), Expect = 0.71 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +DD EQ LA KG Sbjct: 17 YRRSVPTWLKLTSDDVKEQIYKLAKKG 43
>RS13_BOVIN (Q56JX8) 40S ribosomal protein S13| Length = 150 Score = 31.2 bits (69), Expect = 0.71 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +DD EQ LA KG Sbjct: 17 YRRSVPTWLKLTSDDVKEQIYKLAKKG 43
>RS13_PIG (P62279) 40S ribosomal protein S13 (Fragment)| Length = 106 Score = 31.2 bits (69), Expect = 0.71 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +DD EQ LA KG Sbjct: 17 YRRSVPTWLKLTSDDVKEQIYKLAKKG 43
>RS13_GILMI (Q9DFR6) 40S ribosomal protein S13| Length = 150 Score = 30.8 bits (68), Expect = 0.93 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +DD EQ LA KG Sbjct: 17 YRRSVPTWLKLTSDDVKEQIFKLAKKG 43
>RS13_LUMRU (O77303) 40S ribosomal protein S13| Length = 150 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K DD EQ LA KG Sbjct: 17 YRRSVPTWLKLGPDDVKEQIYKLAKKG 43
>ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 877 Score = 30.0 bits (66), Expect = 1.6 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%) Frame = +1 Query: 109 WRCPWRRACSTA---RWGRRWRTWSTLEW 186 W C W++ C T +W R W+ + W Sbjct: 627 WGCAWKQVCHTTVPWQWNNRTPDWNNMTW 655
>RS13_CIOIN (Q8I7D6) 40S ribosomal protein S13| Length = 150 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +++D EQ LA KG Sbjct: 17 YRRSVPTWLKLSSEDVKEQIYKLAKKG 43
>PGK_MYCAV (O32848) Phosphoglycerate kinase (EC 2.7.2.3) (Fragment)| Length = 388 Score = 29.6 bits (65), Expect = 2.1 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = -3 Query: 161 HRRP--QRAVEHARRQGQRHLPAGVPLHVPGRRRGVAHGR 48 HRRP +R V+ RR P P +V GRRR GR Sbjct: 104 HRRPGPRRGVDRRRRPAAGKHPVRRPRNVQGRRRAARAGR 143
>RS13_ICTPU (P47772) 40S ribosomal protein S13| Length = 150 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 + S PTW K +DD EQ LA KG Sbjct: 17 FRRSVPTWLKLTSDDVKEQIFKLAKKG 43
>PT1_RALEU (P23536) Phosphoenolpyruvate-protein phosphotransferase (EC| 2.7.3.9) (Phosphotransferase system, enzyme I) (Protein I) Length = 592 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -3 Query: 176 VDQVRHRRPQRAVEHARRQGQRHLPA 99 +++ RHR+ +RA+E R Q RH PA Sbjct: 248 LEEYRHRQSERALEKKRLQRLRHTPA 273
>DLX3_NOTVI (P53770) Homeobox protein DLX-3 (Box-4) (NVHBOX-4)| Length = 273 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = -1 Query: 217 HRITHSRYEY-STPTWTKFATDDPNEQWNMLAAKGSATFRPACPYMYPDGGEGWHMAGHL 41 H THS ++Y +++ + P Q+N+ G T+ P Y Y G G+ GH Sbjct: 38 HGGTHSPHDYYQNQPYSQPISHYPYHQFNLNGLGGPGTYSPKSEYPY---GGGYRQYGHY 94 Query: 40 TIP 32 P Sbjct: 95 REP 97
>RS13_WUCBA (P62300) 40S ribosomal protein S13 (40S ribosomal protein S15)| Length = 150 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +++ EQ LA KG Sbjct: 17 YRRSVPTWLKLTSEEVQEQVTRLAKKG 43
>RS13_SPOFR (Q962R6) 40S ribosomal protein S13| Length = 150 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K DD EQ L KG Sbjct: 17 YRRSVPTWLKLTADDVKEQIFKLGKKG 43
>RS13_PLUXY (Q8I7U0) 40S ribosomal protein S13| Length = 150 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K DD EQ L KG Sbjct: 17 YRRSVPTWLKLTADDVKEQIFKLGKKG 43
>RS13_CHOPR (Q8MUR2) 40S ribosomal protein S13| Length = 150 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K DD EQ L KG Sbjct: 17 YRRSVPTWLKLTADDVKEQIFKLGKKG 43
>RS13_BRUPA (P62299) 40S ribosomal protein S13 (17.4K protein)| Length = 150 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -1 Query: 196 YEYSTPTWTKFATDDPNEQWNMLAAKG 116 Y S PTW K +++ EQ LA KG Sbjct: 17 YRRSVPTWLKLTSEEVQEQVTRLAKKG 43
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 28.9 bits (63), Expect = 3.5 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 8/51 (15%) Frame = -3 Query: 161 HRRPQRAVEHARRQGQRHL-------PAGVPLHVPGRRRGVAHGRPPH-HP 33 H++ Q+ Q Q+H P G P H PG + H PPH HP Sbjct: 97 HQQQQQHPPPPHMQQQQHHGGPAPPPPGGAPEHAPGVKEEYTHLPPPHPHP 147
>CCRK_MACMU (Q5EDC3) Cell cycle-related kinase (EC 2.7.11.22)| (Cyclin-kinase-activating kinase p42) (CDK-activating kinase p42) (CAK-kinase p42) Length = 243 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = +1 Query: 82 TCRGTPAGRWRCPWRRACSTARWGRRWRTW 171 T R R CPWRR C T+ R W W Sbjct: 175 TTRSPLRSRCPCPWRRCCLTS-LPRHWICW 203
>VCOM_ADECR (Q96685) Minor core protein (Protein V) (pV)| Length = 421 Score = 28.5 bits (62), Expect = 4.6 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -3 Query: 188 LHSNVDQVRHRRPQRAVEHARRQGQRHLPAGVP-LHVPGRRRGVAHGR 48 L NV+ VR P+R + RQ + G+P + PG+R GVA R Sbjct: 59 LEENVEFVRRFAPRRPYQWRGRQVRALPRPGIPVVFTPGQRSGVASKR 106
>VCOM_ADECC (Q65952) Minor core protein (Protein V) (pV)| Length = 421 Score = 28.5 bits (62), Expect = 4.6 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -3 Query: 188 LHSNVDQVRHRRPQRAVEHARRQGQRHLPAGVP-LHVPGRRRGVAHGR 48 L NV+ VR P+R + RQ + G+P + PG+R GVA R Sbjct: 59 LEENVEFVRRFAPRRPYQWRGRQVRALPRPGIPVVFTPGQRSGVASKR 106
>F10A1_PONPY (Q5RF31) Hsc70-interacting protein (Hip) (Protein ST13 homolog)| (Protein FAM10A1) Length = 369 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Frame = -3 Query: 161 HRRPQRAVEHARRQGQRH------LPAGVPLHVPGRRRGVAHGRP 45 H R QR E R+ G ++ P G+P ++PG G+ G P Sbjct: 261 HERAQREEEARRQSGAQYGSFPGGFPGGMPGNLPGGMPGMGGGMP 305
>DAB_DROME (P98081) Protein disabled| Length = 2224 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 164 RHRRPQRAVEHARRQGQRHLPAGVPLHVPGRRR 66 RH QR +E RRQ +RH P + +PG+ R Sbjct: 1941 RHEMHQRMLESERRQMERHQPPSL-AKLPGQNR 1972
>VS48_TBRVE (P22049) Satellite RNA 48 kDa protein| Length = 419 Score = 28.1 bits (61), Expect = 6.0 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 11/55 (20%) Frame = -3 Query: 164 RHRRPQRAVEHARRQGQRHL--PAGVPLHVPGRRRGVAH---------GRPPHHP 33 R+R+P V H R+G R P +V RRGVA GR P++P Sbjct: 11 RNRKPHEKVSHVPRRGPRTYQDPCDPGWYVVNSRRGVAPQPTPTSGSLGRKPYNP 65
>CENG2_XENLA (Q6NRL1) Centaurin-gamma 2| Length = 864 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 8 GGKLAASLWDGEVAGHVPPLS 70 G +LA S+W+G GHV P S Sbjct: 684 GNELANSVWEGSSQGHVKPCS 704
>RHLB_XANCP (Q8P4D4) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)| Length = 573 Score = 27.7 bits (60), Expect = 7.8 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Frame = -3 Query: 164 RHRRPQRAVEHARRQGQRHLPAGVPLHVP--GRRRGVAHGRPPHHPK 30 R R QRA + ARR G R P G GRR G P P+ Sbjct: 419 REAREQRAADEARRGGGRSGPGGASRSGSGGGRRDGAGADGKPRPPR 465
>ENV_SIVVT (P05886) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 865 Score = 27.7 bits (60), Expect = 7.8 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%) Frame = +1 Query: 109 WRCPWRRACSTA---RWGRRWRTWSTLEW 186 W C W++ C T W R W + W Sbjct: 620 WGCAWKQVCHTTVEWPWTNRTPDWQNMTW 648
>YQT1_CAEEL (Q09313) Hypothetical protein F25B5.1| Length = 923 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = -1 Query: 280 ILSVDXRDTDDIAKNKDIQEFHRITHSRYEYSTPTWTKFATDD 152 +L++ DT+ + KD + +HR+TH T F+ D+ Sbjct: 584 LLALHCTDTEIVVSEKDQERWHRVTHHTGGAHAIAVTPFSVDE 626
>COPT2_MOUSE (Q9CPU9) Probable low-affinity copper uptake protein 2 (CTR2)| (Copper transporter 2) (Solute carrier family 31 member 2) Length = 143 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +3 Query: 135 FHCSLGSSVANLVHVGVEYS*RLWVMRWNSWMSL 236 F C G S+ +++ V + Y L VM +N+W+ L Sbjct: 90 FLCYFGQSLVHVIQVVIGYFVMLAVMSYNTWIFL 123
>F10A1_HUMAN (P50502) Hsc70-interacting protein (Hip) (Suppression of| tumorigenicity protein 13) (Putative tumor suppressor ST13) (Protein FAM10A1) (Progesterone receptor-associated p48 protein) (NY-REN-33 antigen) Length = 369 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%) Frame = -3 Query: 161 HRRPQRAVEHARRQGQRH------LPAGVPLHVPGRRRGVAHGRP 45 H R QR E R+ G ++ P G+P + PG G+ G P Sbjct: 261 HERAQREEEARRQSGAQYGSFPGGFPGGMPGNFPGGMPGMGGGMP 305 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,363,701 Number of Sequences: 219361 Number of extensions: 804645 Number of successful extensions: 3129 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 3038 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3124 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
