ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27p02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U55859.1|TAU55859 Triticum aestivum heat shock protein 80 mRN... 192 3e-46
2ref|XM_483191.1| Oryza sativa (japonica cultivar-group), mRNA 56 4e-05
3gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome... 56 4e-05
4emb|Z11920.1|OSHSP82A O.sativa gene for heat shock protein 82 HSP82 56 4e-05
5dbj|AK061896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 4e-05
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 56 4e-05
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 56 4e-05
8dbj|D29709.1|RICYK21 Oryza sativa mRNA, partial homologous to he... 56 4e-05
9dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic D... 56 4e-05
10dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic D... 56 4e-05
11dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic D... 56 4e-05
12dbj|AB111810.1| Oryza sativa (japonica cultivar-group) Hsp90 mRN... 56 4e-05
13dbj|AK121906.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 4e-05
14dbj|AK119663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 4e-05
15emb|Z15018.1|OSHSP82G O.sativa hsp82 gene for heat shock protein 82 56 4e-05
16dbj|AK102426.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 4e-05
17dbj|AK064780.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 4e-05
18gb|BT018733.1| Zea mays clone EL01N0520C02.d mRNA sequence 50 0.002
19dbj|D21284.1|RICAD167 Oryza sativa AD167 mRNA for heat shock pro... 50 0.002
20gb|AY109427.1| Zea mays CL1264_2 mRNA sequence 50 0.002
21gb|BT016606.1| Zea mays clone Contig439 mRNA sequence 48 0.009
22gb|BT024184.1| Zea mays clone EL01N0315D01 mRNA sequence 48 0.009
23gb|AY110769.1| Zea mays CL1264_4 mRNA sequence 48 0.009
24gb|AY105939.1| Zea mays PCO150588 mRNA sequence 48 0.009
25gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, comp... 42 0.58
26gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (... 42 0.58
27gb|AC166164.2| Mus musculus BAC clone RP23-394K2 from chromosome... 40 2.3
28emb|X98582.1|TAX98582 T.aestivum mRNA for HSP80-2 protein 40 2.3
29emb|Z15024.1|OSHSP82MR O.sativa (Taichung Native One) hsp82 mRNA... 40 2.3
30gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome... 40 2.3
31gb|AC146536.3| Dasypus novemcinctus clone VMRC5-215B23, complete... 38 9.1
32gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosom... 38 9.1
33gb|AC164179.7| Mus musculus 10 BAC RP24-63J23 (Roswell Park Canc... 38 9.1
34ref|XM_543861.2| PREDICTED: Canis familiaris similar to Probable... 38 9.1
35gb|AC092685.2| Homo sapiens BAC clone RP11-746P2 from 7, complet... 38 9.1
36gb|AC182641.3| Pan troglodytes BAC clone CH251-294H6 from chromo... 38 9.1
37gb|AC149127.6| Medicago truncatula clone mth2-108o17, complete s... 38 9.1
38gb|AC150476.3| Dasypus novemcinctus clone VMRC5-421E14, complete... 38 9.1
39emb|AL731698.10| Mouse DNA sequence from clone RP23-161B3 on chr... 38 9.1 
>gb|U55859.1|TAU55859 Triticum aestivum heat shock protein 80 mRNA, complete cds
          Length = 2397

 Score =  192 bits (97), Expect = 3e-46
 Identities = 168/187 (89%), Gaps = 5/187 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    cagttccgggcactccatagaccagcatcccctagccccatcagtccaggctaggcacag 60
            |||||||||| |||||| ||||||   |||||||||||||| |   ||||||||||||||
Sbjct: 2357 cagttccggggactccacagaccac--tcccctagccccattacagcaggctaggcacag 2300

                                                                        
Query: 61   taaaccacaaa-gacaaaccgaccacgcgacagtaacc-aaaagatgagctagctctacg 118
            ||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 2299 taaaccataaaagacaaaccgaccacgcgacagtaacccaaaagataagctagctctacg 2240

                                                                        
Query: 119  acttggatagca-gcaaatgcacacgcctagtcgacctccttnatcttgctctcgccggc 177
            ||| |||||||| || || ||||||||||||||||||||||  |||||||||||||||||
Sbjct: 2239 actcggatagcaagcgaacgcacacgcctagtcgacctcctccatcttgctctcgccggc 2180

                   
Query: 178  gtcctcc 184
            |||||||
Sbjct: 2179 gtcctcc 2173
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>ref|XM_483191.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2100

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 146  tagtcgacctccttnatcttgctctcgccggcgtc 180
            |||||||||||||  ||||||||||||||||||||
Sbjct: 2099 tagtcgacctcctccatcttgctctcgccggcgtc 2065
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>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0087J09, complete sequence
          Length = 153351

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 146   tagtcgacctccttnatcttgctctcgccggcgtc 180
             |||||||||||||  ||||||||||||||||||||
Sbjct: 10621 tagtcgacctcctccatcttgctctcgccggcgtc 10655
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>emb|Z11920.1|OSHSP82A O.sativa gene for heat shock protein 82 HSP82
          Length = 5310

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 146  tagtcgacctccttnatcttgctctcgccggcgtc 180
            |||||||||||||  ||||||||||||||||||||
Sbjct: 4930 tagtcgacctcctccatcttgctctcgccggcgtc 4896
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>dbj|AK061896.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G11, full
            insert sequence
          Length = 2440

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 146  tagtcgacctccttnatcttgctctcgccggcgtc 180
            |||||||||||||  ||||||||||||||||||||
Sbjct: 2223 tagtcgacctcctccatcttgctctcgccggcgtc 2189
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 146      tagtcgacctccttnatcttgctctcgccggcgtc 180
                |||||||||||||  ||||||||||||||||||||
Sbjct: 18482615 tagtcgacctcctccatcttgctctcgccggcgtc 18482649



 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 146      tagtcgacctccttnatcttgctctcgccggcgtc 180
                |||||||||||||  ||||||||||||||||||||
Sbjct: 18471156 tagtcgacctcctccatcttgctctcgccggcgtc 18471190



 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 146      tagtcgacctccttnatcttgctctcgccggcgtc 180
                |||||||||||||  ||||||||||||||||||||
Sbjct: 18460310 tagtcgacctcctccatcttgctctcgccggcgtc 18460344
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 146      tagtcgacctccttnatcttgctctcgccggcgtc 180
                |||||||||||||  ||||||||||||||||||||
Sbjct: 24712201 tagtcgacctcctccatcttgctctcgccggcgtc 24712235
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>dbj|D29709.1|RICYK21 Oryza sativa mRNA, partial homologous to heat shock protein 82 gene
          Length = 371

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 146 tagtcgacctccttnatcttgctctcgccggcgtc 180
           |||||||||||||  ||||||||||||||||||||
Sbjct: 197 tagtcgacctcctccatcttgctctcgccggcgtc 163
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>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1345_D02
          Length = 159613

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 146   tagtcgacctccttnatcttgctctcgccggcgtc 180
             |||||||||||||  ||||||||||||||||||||
Sbjct: 13002 tagtcgacctcctccatcttgctctcgccggcgtc 13036
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>dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_A06
          Length = 92836

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 146   tagtcgacctccttnatcttgctctcgccggcgtc 180
             |||||||||||||  ||||||||||||||||||||
Sbjct: 84505 tagtcgacctcctccatcttgctctcgccggcgtc 84539
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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0463D04
          Length = 145828

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 146    tagtcgacctccttnatcttgctctcgccggcgtc 180
              |||||||||||||  ||||||||||||||||||||
Sbjct: 144489 tagtcgacctcctccatcttgctctcgccggcgtc 144523



 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 146    tagtcgacctccttnatcttgctctcgccggcgtc 180
              |||||||||||||  ||||||||||||||||||||
Sbjct: 133030 tagtcgacctcctccatcttgctctcgccggcgtc 133064



 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 146    tagtcgacctccttnatcttgctctcgccggcgtc 180
              |||||||||||||  ||||||||||||||||||||
Sbjct: 122184 tagtcgacctcctccatcttgctctcgccggcgtc 122218
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>dbj|AB111810.1| Oryza sativa (japonica cultivar-group) Hsp90 mRNA for heat shock
            protein 90, complete cds
          Length = 2408

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 146  tagtcgacctccttnatcttgctctcgccggcgtc 180
            |||||||||||||  ||||||||||||||||||||
Sbjct: 2204 tagtcgacctcctccatcttgctctcgccggcgtc 2170
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>dbj|AK121906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105K15, full
            insert sequence
          Length = 1278

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 146  tagtcgacctccttnatcttgctctcgccggcgtc 180
            |||||||||||||  ||||||||||||||||||||
Sbjct: 1063 tagtcgacctcctccatcttgctctcgccggcgtc 1029
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>dbj|AK119663.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B04, full
            insert sequence
          Length = 1538

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 146  tagtcgacctccttnatcttgctctcgccggcgtc 180
            |||||||||||||  ||||||||||||||||||||
Sbjct: 1354 tagtcgacctcctccatcttgctctcgccggcgtc 1320
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>emb|Z15018.1|OSHSP82G O.sativa hsp82 gene for heat shock protein 82
          Length = 704

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 146 tagtcgacctccttnatcttgctctcgccggcgtc 180
           |||||||||||||  ||||||||||||||||||||
Sbjct: 264 tagtcgacctcctccatcttgctctcgccggcgtc 230
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>dbj|AK102426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093F17, full
            insert sequence
          Length = 3149

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 146  tagtcgacctccttnatcttgctctcgccggcgtc 180
            |||||||||||||  ||||||||||||||||||||
Sbjct: 2908 tagtcgacctcctccatcttgctctcgccggcgtc 2874
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>dbj|AK064780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B06, full
            insert sequence
          Length = 2410

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 146  tagtcgacctccttnatcttgctctcgccggcgtc 180
            |||||||||||||  ||||||||||||||||||||
Sbjct: 2225 tagtcgacctcctccatcttgctctcgccggcgtc 2191
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>gb|BT018733.1| Zea mays clone EL01N0520C02.d mRNA sequence
          Length = 2179

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 145  ctagtcgacctccttnatcttgctctcgccggcgtc 180
            ||||||||||||||  |||||||||||||| |||||
Sbjct: 2034 ctagtcgacctcctccatcttgctctcgccagcgtc 1999
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>dbj|D21284.1|RICAD167 Oryza sativa AD167 mRNA for heat shock protein 82, partial sequence
          Length = 474

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 146 tagtcgacctccttnatcttgctctcgccggcgtc 180
           |||||||||||||  |||||||||||| |||||||
Sbjct: 269 tagtcgacctcctccatcttgctctcgncggcgtc 235
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>gb|AY109427.1| Zea mays CL1264_2 mRNA sequence
          Length = 1267

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 145  ctagtcgacctccttnatcttgctctcgccggcgtc 180
            ||||||||||||||  |||||||||||||| |||||
Sbjct: 1017 ctagtcgacctcctccatcttgctctcgccagcgtc 982
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>gb|BT016606.1| Zea mays clone Contig439 mRNA sequence
          Length = 867

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 146 tagtcgacctccttnatcttgctctcgccggcgtc 180
           |||||||||||||  |||||||||||||| |||||
Sbjct: 533 tagtcgacctcctccatcttgctctcgccagcgtc 499
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>gb|BT024184.1| Zea mays clone EL01N0315D01 mRNA sequence
          Length = 1740

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 146  tagtcgacctccttnatcttgctctcgccggcgtc 180
            |||||||||||||  |||||||||||||| |||||
Sbjct: 1477 tagtcgacctcctccatcttgctctcgccagcgtc 1443
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>gb|AY110769.1| Zea mays CL1264_4 mRNA sequence
          Length = 864

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 146 tagtcgacctccttnatcttgctctcgccggcgtc 180
           |||||||||||||  |||||||||||||| |||||
Sbjct: 531 tagtcgacctcctccatcttgctctcgccagcgtc 497
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>gb|AY105939.1| Zea mays PCO150588 mRNA sequence
          Length = 1101

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 146 tagtcgacctccttnatcttgctctcgccggcgtc 180
           |||||||||||||  |||||||| |||||||||||
Sbjct: 893 tagtcgacctcctccatcttgctttcgccggcgtc 859
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>gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, complete sequence
          Length = 209365

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 57     acagtaaaccacaaagacaaa 77
              |||||||||||||||||||||
Sbjct: 127015 acagtaaaccacaaagacaaa 127035
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>gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (HSP90) mRNA,
            complete cds
          Length = 2553

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 146  tagtcgacctccttnatcttgctctcgccggc 177
            |||||||||||||  ||||||||||| |||||
Sbjct: 2169 tagtcgacctcctccatcttgctctcaccggc 2138
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>gb|AC166164.2| Mus musculus BAC clone RP23-394K2 from chromosome 17, complete sequence
          Length = 197143

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   agatgagctagctctacgac 120
             ||||||||||||||||||||
Sbjct: 21031 agatgagctagctctacgac 21012
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>emb|X98582.1|TAX98582 T.aestivum mRNA for HSP80-2 protein
          Length = 2378

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 146  tagtcgacctccttnatcttgctctcgccggcgtc 180
            |||||||||||||  ||||||||||| || |||||
Sbjct: 2181 tagtcgacctcctccatcttgctctcaccagcgtc 2147
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>emb|Z15024.1|OSHSP82MR O.sativa (Taichung Native One) hsp82 mRNA for heat shock protein 82
          Length = 368

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 146 tagtcgacctccttnatcttgctctcgccggcgtc 180
           |||||||||||||  |||||  |||||||||||||
Sbjct: 219 tagtcgacctcctccatcttcgtctcgccggcgtc 185
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>gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome 17, complete sequence
          Length = 206353

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   agatgagctagctctacgac 120
             ||||||||||||||||||||
Sbjct: 29948 agatgagctagctctacgac 29967
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>gb|AC146536.3| Dasypus novemcinctus clone VMRC5-215B23, complete sequence
          Length = 113776

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 91    agtaaccaaaagatgagct 109
             |||||||||||||||||||
Sbjct: 13356 agtaaccaaaagatgagct 13338
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>gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosome 15, complete
             sequence
          Length = 189263

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 94    aaccaaaagatgagctagctcta 116
             |||||||||||||||||| ||||
Sbjct: 40194 aaccaaaagatgagctaggtcta 40172
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>gb|AC164179.7| Mus musculus 10 BAC RP24-63J23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 209011

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 62     aaaccacaaagacaaaccgacca 84
              |||||||| ||||||||||||||
Sbjct: 114574 aaaccacacagacaaaccgacca 114596
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>ref|XM_543861.2| PREDICTED: Canis familiaris similar to Probable polypeptide
           N-acetylgalactosaminyltransferase 8 (Protein-UDP
           acetylgalactosaminyltransferase 8)
           (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 8) (Polypeptide GalNAc
           transferase 8) (GalNAc-T8) (pp-GaNTase 8)...
           (LOC486734), mRNA
          Length = 1314

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  ctccatagaccagcatccc 31
           |||||||||||||||||||
Sbjct: 733 ctccatagaccagcatccc 715
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>gb|AC092685.2| Homo sapiens BAC clone RP11-746P2 from 7, complete sequence
          Length = 183263

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 88     gacagtaaccaaaagatga 106
              |||||||||||||||||||
Sbjct: 142498 gacagtaaccaaaagatga 142480
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>gb|AC182641.3| Pan troglodytes BAC clone CH251-294H6 from chromosome 7, complete
             sequence
          Length = 145564

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 88    gacagtaaccaaaagatga 106
             |||||||||||||||||||
Sbjct: 45913 gacagtaaccaaaagatga 45931
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>gb|AC149127.6| Medicago truncatula clone mth2-108o17, complete sequence
          Length = 92727

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 59    agtaaaccacaaagacaaaccga 81
             |||||||||||||||||| ||||
Sbjct: 31083 agtaaaccacaaagacaacccga 31061
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>gb|AC150476.3| Dasypus novemcinctus clone VMRC5-421E14, complete sequence
          Length = 68689

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 91    agtaaccaaaagatgagct 109
             |||||||||||||||||||
Sbjct: 67982 agtaaccaaaagatgagct 67964
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>emb|AL731698.10| Mouse DNA sequence from clone RP23-161B3 on chromosome 2, complete
             sequence
          Length = 61072

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 2     agttccgggcactccatagacca 24
             |||||| ||||||||||||||||
Sbjct: 12092 agttcctggcactccatagacca 12070


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,081,335
Number of Sequences: 3902068
Number of extensions: 1081335
Number of successful extensions: 100675
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100542
Number of HSP's gapped (non-prelim): 130
length of query: 184
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 162
effective length of database: 17,147,199,772
effective search space: 2777846363064
effective search space used: 2777846363064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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