>gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full insert mRNA
            sequence
          Length = 1676

 Score =  343 bits (173), Expect = 3e-91
 Identities = 235/255 (92%), Gaps = 8/255 (3%)
 Strand = Plus / Minus

                                                                        
Query: 203  taagatcccaaagttgtcccagtgtagaggagttaatgaccaaaattgtatgcatcttat 262
            ||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||
Sbjct: 1441 taagatcccaaagttatcccacagtagaggagttaataaccaaaattgtatgcatcttat 1382

                                                                        
Query: 263  ttttcttgtgaaaaatgtgaccacagatgatcttgaagaaaaa---atatgaacagttaa 319
            |||||||||||||||||||||||     | ||||| |||||||   ||||||||||||||
Sbjct: 1381 ttttcttgtgaaaaatgtgacca-----ggtcttggagaaaaataaatatgaacagttaa 1327

                                                                        
Query: 320  cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcataggctggt 379
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1326 cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcgtaggctggt 1267

                                                                        
Query: 380  acgctgagaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagca 439
            ||  ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1266 acattgagaacatttccatgagatgccattgtcaatggtgacgagatgatcttctcagca 1207

                           
Query: 440  acagttgatacatct 454
            |||||||||||||||
Sbjct: 1206 acagttgatacatct 1192



 Score =  188 bits (95), Expect = 1e-44
 Identities = 164/189 (86%), Gaps = 3/189 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    tattgaatctttattnatttccttgccccagcactagtttcaacgactttaaccnnnnnn 60
            ||||||||||||||| |||||  ||||||  |||| |||||| |||||||||||      
Sbjct: 1648 tattgaatctttattcatttctgtgccccgacactggtttcatcgactttaacccaaaaa 1589

                                                                        
Query: 61   ngtggaggaacattttgtacacccttccggactgccaccgaaagagggccacccatgcat 120
             ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||
Sbjct: 1588 agtggaggaacattttgtacacccttccggactgccactgaaagagggccacccatatat 1529

                                                                        
Query: 121  gatttcactgaatttacagtaacatatctcaagagaacaacatcacaccaccaaactcag 180
            ||||||||||||||||||| ||||||||||  |||   |||||||||||| |||| ||||
Sbjct: 1528 gatttcactgaatttacaggaacatatctcttgag---aacatcacaccaacaaattcag 1472

                     
Query: 181  gtggataca 189
            |||||||||
Sbjct: 1471 gtggataca 1463

>gb|AY011123.1| Dactylis glomerata mitochondrial processing peptidase alpha-chain
            precursor (DGMPP) mRNA, complete cds
          Length = 1799

 Score =  186 bits (94), Expect = 4e-44
 Identities = 161/182 (88%), Gaps = 1/182 (0%)
 Strand = Plus / Minus

                                                                        
Query: 274  aaaatgtgaccacagatgatcttgaa-gaaaaaatatgaacagttaacttgttcagaagc 332
            |||||||||||| | ||||||||| | ||||| |||| |||||||| ||||| |||| ||
Sbjct: 1659 aaaatgtgaccagaaatgatcttggatgaaaatatatcaacagttatcttgtccagacgc 1600

                                                                        
Query: 333  ctcctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgt 392
            || |||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||
Sbjct: 1599 ctactcatttcgagctgaacttgccgcgcactgtctcgtaagctggtacgttgagaacgt 1540

                                                                        
Query: 393  ttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacat 452
             |||||| ||||||||||||||||||||||||||||| ||| |||| | || ||||||||
Sbjct: 1539 ctccatgggatgccattgtcaatggtgatgagatgattttctcagcgagagctgatacat 1480

              
Query: 453  ct 454
            ||
Sbjct: 1479 ct 1478

>dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O10, full
            insert sequence
          Length = 2012

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                        
Query: 336  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 395
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1650 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1591

                                                         
Query: 396  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaa 440
            |||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 1590 catgagatgccattgtcaatggtgatgatatgattttctcagcaa 1546

>dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073N24, full
            insert sequence
          Length = 1991

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                        
Query: 336  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 395
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1644 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1585

                                                         
Query: 396  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaa 440
            |||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 1584 catgagatgccattgtcaatggtgatgatatgattttctcagcaa 1540

>gb|AY108609.1| Zea mays PCO088346 mRNA sequence
          Length = 2030

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 386  agaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacag 443
            |||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||
Sbjct: 1616 agaacgtttccatgagatgccattgtcaatggggatgaaatgatcttttcagcaacag 1559

>ref|NM_189667.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2478

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                               
Query: 390  cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaa 440
            |||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 2143 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaa 2093

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                  
Query: 390     cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaa 440
               |||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 4895375 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaa 4895325

>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                 
Query: 390    cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaa 440
              |||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 140024 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaa 139974

>emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K2 on chromosome 6q25.1-25.3
              Contains part of the gene for BRG1-binding protein ELD/OSA1
              (p250R KIAA1235) (FLJ00253 FLJ22292), a novel gene and two
              CpG islands, complete sequence
          Length = 187507

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 117    gcatgatttcactgaatttacag 139
              |||||||||||||||||||||||
Sbjct: 161069 gcatgatttcactgaatttacag 161091

>gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, complete sequence
          Length = 179719

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 233   agttaatgaccaaaattgtat 253
             |||||||||||||||||||||
Sbjct: 61917 agttaatgaccaaaattgtat 61937

>ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0248) partial mRNA
          Length = 1698

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 156 aacaacatcacaccaccaaactcag 180
           |||||| ||||||||||||||||||
Sbjct: 809 aacaacttcacaccaccaaactcag 785

>gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complete sequence
          Length = 57075

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 416   ggtgatgagatgatcttcgcagcaa 440
             ||||||||||||||||| |||||||
Sbjct: 35226 ggtgatgagatgatctttgcagcaa 35202

>emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chromosome 10 Contains
             part of the UPF2 gene for UPF2 regulator of nonsense
             transcripts homolog (yeast) (FLJ38872), complete sequence
          Length = 76287

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 416   ggtgatgagatgatcttcgcagcaa 440
             |||||||||||||||| ||||||||
Sbjct: 58397 ggtgatgagatgatctgcgcagcaa 58421

>ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, complete cds
          Length = 2544

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 265 ttcttgtgaaaaatgtgacca 285
           |||||||||||||||||||||
Sbjct: 268 ttcttgtgaaaaatgtgacca 248

>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 262   tttttcttgtgaaaaatgtga 282
             |||||||||||||||||||||
Sbjct: 40734 tttttcttgtgaaaaatgtga 40714

>gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosome 5, complete sequence
          Length = 176925

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   tgcatcttatttttcttgtg 272
             ||||||||||||||||||||
Sbjct: 96818 tgcatcttatttttcttgtg 96799

>gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromosome 7, complete sequence
          Length = 168126

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 416    ggtgatgagatgatcttcgcagca 439
              ||||||||||||||||| ||||||
Sbjct: 123750 ggtgatgagatgatctttgcagca 123773

>emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, complete sequence
          Length = 25468

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  caaaattgtatgcatcttat 262
            ||||||||||||||||||||
Sbjct: 8625 caaaattgtatgcatcttat 8606

>gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete sequence
          Length = 40766

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   aatgaccaaaattgtatgca 256
             ||||||||||||||||||||
Sbjct: 32199 aatgaccaaaattgtatgca 32218

>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    gttaatgaccaaaattgtat 253
              ||||||||||||||||||||
Sbjct: 246428 gttaatgaccaaaattgtat 246409

>emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C8 on chromosome 20 Contains three
              different 5' ends of the C20orf101 gene and three CpG
              islands, complete sequence
          Length = 150985

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    agatgatcttgaagaaaaaa 306
              ||||||||||||||||||||
Sbjct: 139494 agatgatcttgaagaaaaaa 139475

>emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 in linkage group 20
             Contains the 3' end of the gene for a novel protein
             similar to vertebrate X-ray repair complementing defective
             repair in Chinese hamster cells 5 (double-strand-break
             rejoining; Ku autoantigen, 80kDa) (XRCC5), the gene for a
             novel protein similar to vertebrate SWI/SNF related matrix
             associated actin dependent regulator of chromatin
             subfamily a-like 1 (SMARCAL1), two novel genes and three
             CpG islands, complete sequence
          Length = 150882

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   cacaccaccaaactcaggtg 183
             ||||||||||||||||||||
Sbjct: 20138 cacaccaccaaactcaggtg 20157

>gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 16349

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   gatgccattgtcaatggtga 420
             ||||||||||||||||||||
Sbjct: 13177 gatgccattgtcaatggtga 13196

>gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 17453

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   gatgccattgtcaatggtga 420
             ||||||||||||||||||||
Sbjct: 14281 gatgccattgtcaatggtga 14300

>dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG2011188, highly similar
           to EPHRIN TYPE-B RECEPTOR 1 PRECURSOR (EC 2.7.1.112)
          Length = 2737

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 aacttgttcagaagcctcct 337
           ||||||||||||||||||||
Sbjct: 187 aacttgttcagaagcctcct 168

>gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete sequence
          Length = 199409

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    atttcactgaatttacagta 141
              ||||||||||||||||||||
Sbjct: 177713 atttcactgaatttacagta 177694

>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence
          Length = 166133

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   gaagaaaaaatatgaacagt 316
             ||||||||||||||||||||
Sbjct: 45416 gaagaaaaaatatgaacagt 45435

>emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in linkage group 1,
              complete sequence
          Length = 166353

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 253    tgcatcttatttttcttgtgaaaa 276
              |||||||||||||| |||||||||
Sbjct: 150147 tgcatcttattttttttgtgaaaa 150124

>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence
          Length = 184142

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   gaagaaaaaatatgaacagt 316
             ||||||||||||||||||||
Sbjct: 89621 gaagaaaaaatatgaacagt 89640

>gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen biosynthetic locus,
             partial sequence
          Length = 19104

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   gatgccattgtcaatggtga 420
             ||||||||||||||||||||
Sbjct: 15929 gatgccattgtcaatggtga 15948

>gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109999

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   aacttgttcagaagcctcct 337
             ||||||||||||||||||||
Sbjct: 91747 aacttgttcagaagcctcct 91766

>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence
          Length = 203368

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   gaagaaaaaatatgaacagt 316
             ||||||||||||||||||||
Sbjct: 80706 gaagaaaaaatatgaacagt 80725

>gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, complete sequence
          Length = 185242

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    atttcactgaatttacagta 141
              ||||||||||||||||||||
Sbjct: 128212 atttcactgaatttacagta 128231

>gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome 5, complete
            sequence
          Length = 211677

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  tgcatcttatttttcttgtg 272
            ||||||||||||||||||||
Sbjct: 9841 tgcatcttatttttcttgtg 9822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,363,124
Number of Sequences: 3902068
Number of extensions: 4363124
Number of successful extensions: 94874
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94754
Number of HSP's gapped (non-prelim): 117
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)