ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28d23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, p... 1140 0.0
2gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransf... 801 0.0
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
4emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb... 98 4e-17
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 98 4e-17
6emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E... 98 4e-17
7emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003... 66 1e-07
8ref|XM_470970.1| Oryza sativa (japonica cultivar-group), predic... 64 6e-07
9emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4,... 64 6e-07
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
11dbj|AK069960.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
12ref|XM_474640.1| Oryza sativa (japonica cultivar-group), predic... 50 0.009
13emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4,... 50 0.009
14dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
15dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
16gb|U63634.1|MCU63634 Mesembryanthemum crystallinum inositol meth... 50 0.009
17gb|M87340.1|CIPIMT1A Mesembryanthemum crystallinum methyl transf... 50 0.009
18gb|AF067968.1|AF067968 Mesembryanthemum crystallinum caffeic aci... 46 0.14
19emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chr... 44 0.53
20gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome... 42 2.1
21ref|XM_664595.1| Plasmodium berghei strain ANKA hypothetical pro... 42 2.1
22dbj|AK134874.1| Mus musculus adult male olfactory brain cDNA, RI... 42 2.1
23gb|AC169981.3| Mus musculus BAC clone RP24-346E16 from chromosom... 42 2.1
24gb|AC079750.5| Homo sapiens BAC clone RP11-33L3 from 2, complete... 42 2.1
25dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.1
26gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 42 2.1
27gb|AC005200.1| Homo sapiens chromosome 5, P1 clone 793c5 (LBNL H... 40 8.3
28gb|AC150386.2| Branchiostoma floridae clone CH302-103G16, comple... 40 8.3
29ref|XM_960728.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.3
30ref|XM_954671.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.3
31ref|XM_324860.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.3
32ref|XM_331113.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.3
33gb|AC072048.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 8.3
34gb|AC093477.6| Mus musculus chromosome 1, clone RP23-58B6, compl... 40 8.3
35gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosom... 40 8.3
36emb|Z67990.1|CEF02D10 Caenorhabditis elegans Cosmid F02D10, comp... 40 8.3
37emb|BX927322.12| Zebrafish DNA sequence from clone CH211-101J8 i... 40 8.3
38emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome;... 40 8.3
39gb|AC163296.2| Mus musculus BAC clone RP23-135F1 from chromosome... 40 8.3
40gb|AC123904.5| Homo sapiens 12 BAC RP11-361A23 (Roswell Park Can... 40 8.3
41gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete se... 40 8.3
42dbj|AB057033.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 8.3
43dbj|AB057031.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 8.3
44dbj|AB057016.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 8.3
45dbj|AB057015.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 8.3
46gb|AC104246.3| Homo sapiens chromosome 8, clone RP11-1073L1, com... 40 8.3
47gb|AC027141.7| Homo sapiens chromosome 18, clone RP11-29E21, com... 40 8.3
48gb|AC090365.7| Homo sapiens chromosome 18, clone RP11-885L22, co... 40 8.3
49gb|AC008608.7| Homo sapiens chromosome 5 clone CTB-113I20, compl... 40 8.3
50gb|AF269342.1|AF269342 Staphylococcus epidermidis strain SR1 clo... 40 8.3
51gb|AF269321.1|AF269321 Staphylococcus epidermidis strain SR1 clo... 40 8.3
52gb|AC046174.6| Homo sapiens chromosome 8, clone RP11-621B3, comp... 40 8.3
53gb|AC158573.5| Mus musculus chromosome 8, clone RP23-101F17, com... 40 8.3
54gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, comple... 40 8.3
55gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Canc... 40 8.3
56dbj|AB183825.1| Iris hollandica IhCOMT mRNA for Caffeic acid O-m... 40 8.3
57gb|AC078842.2|AC078842 Homo sapiens chromosome 7 clone RP11-102G... 40 8.3
58gb|AF270232.1|AF270232 Staphylococcus epidermidis strain SR1 clo... 40 8.3
59gb|AC067918.1|AC067918 Neurospora crassa chromosome 7, clone G23... 40 8.3
60emb|BX908788.1| Neurospora crassa DNA linkage group VII BAC clon... 40 8.3
61gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 8.3
62emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in... 40 8.3
63emb|AL096821.3|CNS00YVG Human chromosome 14 DNA sequence BAC R-6... 40 8.3
64emb|AL132719.4|CNS01DTH Human chromosome 14 DNA sequence BAC R-1... 40 8.3
65gb|AE015927.1| Clostridium tetani E88, complete genome 40 8.3
66gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete s... 40 8.3
67gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 8.3
68dbj|AP005671.2| Homo sapiens genomic DNA, chromosome 18 clone:CT... 40 8.3
69gb|AC131584.7| Mus musculus chromosome 1, clone RP23-215C21, com... 40 8.3
70emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 i... 40 8.3
71gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosom... 40 8.3
72emb|AL805968.6| Mouse DNA sequence from clone RP23-424G19 on chr... 40 8.3 
>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds
          Length = 983

 Score = 1140 bits (575), Expect = 0.0
 Identities = 598/607 (98%), Gaps = 1/607 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   tggcttttatgatagaaataataaaatgaaaatn-taaatgagcacgtgagctagcagct 66
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 958 tggcttttatgatagaaataataaaatgaaaatcataaatgagcacgtgagctagcagct 899

                                                                       
Query: 67  cttattcgggacattattcgcnnnnnnngaagtgctcctattcgggactataccactctg 126
           |||||||||||||||||||||       ||||||||||||||||||||||||||||||||
Sbjct: 898 cttattcgggacattattcgcaaaaaaagaagtgctcctattcgggactataccactctg 839

                                                                       
Query: 127 gtacgtggatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gtacgtggatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttc 779

                                                                       
Query: 187 ttgatgccaccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttgatgccaccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctc 719

                                                                       
Query: 247 tgctttgctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgct 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tgctttgctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgct 659

                                                                       
Query: 307 gtgagagacgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gtgagagacgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtct 599

                                                                       
Query: 367 tttgggagagcgttgtggcagttgcttagtattttgacgaactcgtcgtcgttaagcata 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tttgggagagcgttgtggcagttgcttagtattttgacgaactcgtcgtcgttaagcata 539

                                                                       
Query: 427 agcgtgatccactgcaagagaaccgcatctccagtgggtatactctcatacatatctcca 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agcgtgatccactgcaagagaaccgcatctccagtgggtatactctcatacatatctcca 479

                                                                       
Query: 487 gccacatgttcgactcctggaagagggaggccttgggcgatgacatgaggcaggtcatag 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gccacatgttcgactcctggaagagggaggccttgggcgatgacatgaggcaggtcatag 419

                                                                       
Query: 547 ttgatgccggtcatgtgcttgtacttagaggtgatcatccctagggtggagccggtgcca 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgatgccggtcatgtgcttgtacttagaggtgatcatccctagggtggagccggtgcca 359

                  
Query: 607 ccaccga 613
           |||||||
Sbjct: 358 ccaccga 352
to top
>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene,
            complete cds
          Length = 5238

 Score =  801 bits (404), Expect = 0.0
 Identities = 427/436 (97%), Gaps = 1/436 (0%)
 Strand = Plus / Minus

                                                                        
Query: 8    tggcttttatgatagaaataataaaatgaaaatn-taaatgagcacgtgagctagcagct 66
            |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 4861 tggcttttatgatagaaataataaaatgaaaatcataaatgagcacgtgagctagcagct 4802

                                                                        
Query: 67   cttattcgggacattattcgcnnnnnnngaagtgctcctattcgggactataccactctg 126
            |||||||||||||||||||||       ||||||||||||||||||||||||||||||||
Sbjct: 4801 cttattcgggacattattcgcaaaaaaagaagtgctcctattcgggactataccactctg 4742

                                                                        
Query: 127  gtacgtggatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttc 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4741 gtacgtggatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttc 4682

                                                                        
Query: 187  ttgatgccaccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctc 246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4681 ttgatgccaccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctc 4622

                                                                        
Query: 247  tgctttgctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgct 306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4621 tgctttgctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgct 4562

                                                                        
Query: 307  gtgagagacgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtct 366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4561 gtgagagacgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtct 4502

                                                                        
Query: 367  tttgggagagcgttgtggcagttgcttagtattttgacgaactcgtcgtcgttaagcata 426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4501 tttgggagagcgttgtggcagttgcttagtattttgacgaactcgtcgtcgttaagcata 4442

                            
Query: 427  agcgtgatccactgca 442
            ||||||||||||||||
Sbjct: 4441 agcgtgatccactgca 4426



 Score =  222 bits (112), Expect = 1e-54
 Identities = 112/112 (100%)
 Strand = Plus / Minus

                                                                        
Query: 502  cctggaagagggaggccttgggcgatgacatgaggcaggtcatagttgatgccggtcatg 561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3650 cctggaagagggaggccttgggcgatgacatgaggcaggtcatagttgatgccggtcatg 3591

                                                                
Query: 562  tgcttgtacttagaggtgatcatccctagggtggagccggtgccaccaccga 613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3590 tgcttgtacttagaggtgatcatccctagggtggagccggtgccaccaccga 3539



 Score =  135 bits (68), Expect = 2e-28
 Identities = 68/68 (100%)
 Strand = Plus / Minus

                                                                        
Query: 438  ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3910 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 3851

                    
Query: 498  gactcctg 505
            ||||||||
Sbjct: 3850 gactcctg 3843
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                           
Query: 146     tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 205
               ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 5374724 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374665

                                                                           
Query: 206     cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 265
               ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 5374664 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374605

                                                    
Query: 266     gcacaaacatgatgatatccaaggtgaatgcatcccg 302
               | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 5374604 ggacaaacatgatcatatccatggtgaatgaatcccg 5374568



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 65/72 (90%)
 Strand = Plus / Minus

                                                                           
Query: 525     gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
               ||||||||||||||||||||||||||||||  | ||||||||||||   |||||||||||
Sbjct: 5364332 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 5364273

                           
Query: 585     ccctagggtgga 596
               ||| ||||||||
Sbjct: 5364272 ccccagggtgga 5364261



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                           
Query: 137     gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 196
               |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 5173415 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173356

                                                                           
Query: 197     cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 256
               ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 5173355 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173296

                                                                
Query: 257     ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 305
               |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 5173295 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173247



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                           
Query: 438     ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 497
               |||||| ||||  ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 5172597 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 5172538



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                           
Query: 525     gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
               |||||| |||||||||||||||||||||||  | || ||||| |||    ||||||||||
Sbjct: 5172160 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 5172101

                           
Query: 585     ccctagggtgga 596
               ||| ||||||||
Sbjct: 5172100 ccccagggtgga 5172089
to top
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                         
Query: 146   tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 205
             ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 46791 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 46732

                                                                         
Query: 206   cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 265
             ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 46731 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 46672

                                                  
Query: 266   gcacaaacatgatgatatccaaggtgaatgcatcccg 302
             | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 46671 ggacaaacatgatcatatccatggtgaatgaatcccg 46635



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 65/72 (90%)
 Strand = Plus / Minus

                                                                         
Query: 525   gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
             ||||||||||||||||||||||||||||||  | ||||||||||||   |||||||||||
Sbjct: 36399 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 36340

                         
Query: 585   ccctagggtgga 596
             ||| ||||||||
Sbjct: 36339 ccccagggtgga 36328
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                           
Query: 146     tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 205
               ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 5374713 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374654

                                                                           
Query: 206     cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 265
               ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 5374653 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374594

                                                    
Query: 266     gcacaaacatgatgatatccaaggtgaatgcatcccg 302
               | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 5374593 ggacaaacatgatcatatccatggtgaatgaatcccg 5374557



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 65/72 (90%)
 Strand = Plus / Minus

                                                                           
Query: 525     gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
               ||||||||||||||||||||||||||||||  | ||||||||||||   |||||||||||
Sbjct: 5364321 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 5364262

                           
Query: 585     ccctagggtgga 596
               ||| ||||||||
Sbjct: 5364261 ccccagggtgga 5364250



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                           
Query: 137     gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 196
               |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 5173397 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173338

                                                                           
Query: 197     cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 256
               ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 5173337 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173278

                                                                
Query: 257     ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 305
               |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 5173277 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173229



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                           
Query: 438     ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 497
               |||||| ||||  ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 5172579 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 5172520



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                           
Query: 525     gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
               |||||| |||||||||||||||||||||||  | || ||||| |||    ||||||||||
Sbjct: 5172142 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 5172083

                           
Query: 585     ccctagggtgga 596
               ||| ||||||||
Sbjct: 5172082 ccccagggtgga 5172071
to top
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 141841

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 130/157 (82%)
 Strand = Plus / Plus

                                                                         
Query: 146   tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 205
             ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 91084 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 91143

                                                                         
Query: 206   cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 265
             ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 91144 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 91203

                                                  
Query: 266   gcacaaacatgatgatatccaaggtgaatgcatcccg 302
             | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 91204 ggacaaacatgatcatatccatggtgaatgaatcccg 91240



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 65/72 (90%)
 Strand = Plus / Plus

                                                                          
Query: 525    gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
              ||||||||||||||||||||||||||||||  | ||||||||||||   |||||||||||
Sbjct: 101476 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 101535

                          
Query: 585    ccctagggtgga 596
              ||| ||||||||
Sbjct: 101536 ccccagggtgga 101547
to top
>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124959

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 135/169 (79%)
 Strand = Plus / Plus

                                                                         
Query: 137   gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 196
             |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 90184 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 90243

                                                                         
Query: 197   cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 256
             ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 90244 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 90303

                                                              
Query: 257   ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 305
             |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 90304 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 90352



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                         
Query: 525   gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
             |||||| |||||||||||||||||||||||  | || ||||| |||    ||||||||||
Sbjct: 91439 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 91498

                         
Query: 585   ccctagggtgga 596
             ||| ||||||||
Sbjct: 91499 ccccagggtgga 91510



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                         
Query: 438   ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 497
             |||||| ||||  ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 91002 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 91061
to top
>ref|XM_470970.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1065

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 526 atgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatc 585
           |||||||||||||||||  |||| | |||||| |||| ||||||| | || |||||||||
Sbjct: 677 atgacatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatc 618

                               
Query: 586 cctagggtggagccggtgcc 605
            | ||||||| |||||||||
Sbjct: 617 tccagggtggcgccggtgcc 598
to top
>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15,
              complete sequence
          Length = 144778

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                          
Query: 526    atgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatc 585
              |||||||||||||||||  |||| | |||||| |||| ||||||| | || |||||||||
Sbjct: 103606 atgacatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatc 103547

                                  
Query: 586    cctagggtggagccggtgcc 605
               | ||||||| |||||||||
Sbjct: 103546 tccagggtggcgccggtgcc 103527
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                          
Query: 526    atgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatc 585
              |||||||||||||||||  |||| | |||||| |||| ||||||| | || |||||||||
Sbjct: 307786 atgacatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatc 307727

                                  
Query: 586    cctagggtggagccggtgcc 605
               | ||||||| |||||||||
Sbjct: 307726 tccagggtggcgccggtgcc 307707



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                           
Query: 525     gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
               ||||||||| || |||||  |||| | |||||| || |||||||||   |||||||||||
Sbjct: 5127584 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 5127525

                                    
Query: 585     ccctagggtggagccggtgcc 605
               | | ||||||| |||||||||
Sbjct: 5127524 ctccagggtggcgccggtgcc 5127504
to top
>dbj|AK069960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037K22, full
           insert sequence
          Length = 1233

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 529 acatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatccct 588
           ||||||||||||||  |||| | |||||| |||| ||||||| | || ||||||||| | 
Sbjct: 684 acatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatctcc 625

                            
Query: 589 agggtggagccggtgcc 605
           ||||||| |||||||||
Sbjct: 624 agggtggcgccggtgcc 608
to top
>ref|XM_474640.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 525 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
           ||||||||| || |||||  |||| | |||||| || |||||||||   |||||||||||
Sbjct: 747 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 688

                                
Query: 585 ccctagggtggagccggtgcc 605
           | | ||||||| |||||||||
Sbjct: 687 ctccagggtggcgccggtgcc 667
to top
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
              complete sequence
          Length = 144144

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                          
Query: 525    gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
              ||||||||| || |||||  |||| | |||||| || |||||||||   |||||||||||
Sbjct: 103857 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 103798

                                   
Query: 585    ccctagggtggagccggtgcc 605
              | | ||||||| |||||||||
Sbjct: 103797 ctccagggtggcgccggtgcc 103777
to top
>dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D16, full
           insert sequence
          Length = 1308

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 525 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
           ||||||||| || |||||  |||| | |||||| || |||||||||   |||||||||||
Sbjct: 773 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 714

                                
Query: 585 ccctagggtggagccggtgcc 605
           | | ||||||| |||||||||
Sbjct: 713 ctccagggtggcgccggtgcc 693
to top
>dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102F20, full
           insert sequence
          Length = 1365

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 525 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 584
           ||||||||| || |||||  |||| | |||||| || |||||||||   |||||||||||
Sbjct: 760 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 701

                                
Query: 585 ccctagggtggagccggtgcc 605
           | | ||||||| |||||||||
Sbjct: 700 ctccagggtggcgccggtgcc 680
to top
>gb|U63634.1|MCU63634 Mesembryanthemum crystallinum inositol methyltransferase (Imt1) gene,
            complete cds
          Length = 3929

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 526  atgacatgaggcaggtcatagttgatgcc 554
            ||||||||||||| |||||||||||||||
Sbjct: 2808 atgacatgaggcaagtcatagttgatgcc 2780
to top
>gb|M87340.1|CIPIMT1A Mesembryanthemum crystallinum methyl transferase (Imt1) mRNA,
           complete cds
          Length = 1494

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 526 atgacatgaggcaggtcatagttgatgcc 554
           ||||||||||||| |||||||||||||||
Sbjct: 756 atgacatgaggcaagtcatagttgatgcc 728
to top
>gb|AF067968.1|AF067968 Mesembryanthemum crystallinum caffeic acid 3-O-methyltransferase
           mRNA, partial cds
          Length = 1205

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 524 cgatgacatgaggcaggtcatagttgatgcc 554
           |||||||||||||||| ||| ||||||||||
Sbjct: 666 cgatgacatgaggcagatcaaagttgatgcc 636
to top
>emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chromosome 2, complete
             sequence
          Length = 220275

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 12    ttttatgatagaaataataaaa 33
             ||||||||||||||||||||||
Sbjct: 96149 ttttatgatagaaataataaaa 96170
to top
>gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome 6, complete sequence
          Length = 238262

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 472    tcatacatatctccagccacatgtt 496
              |||||||||| ||||||||||||||
Sbjct: 237760 tcatacatatatccagccacatgtt 237784
to top
>ref|XM_664595.1| Plasmodium berghei strain ANKA hypothetical protein (PB108243.00.0)
           partial mRNA
          Length = 634

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 12  ttttatgatagaaataataaaatgaaaat 40
           |||||||| ||| ||||||||||||||||
Sbjct: 111 ttttatgaaagatataataaaatgaaaat 83
to top
>dbj|AK134874.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430501C11
            product:unclassifiable, full insert sequence
          Length = 1789

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 472  tcatacatatctccagccacatgtt 496
            |||||||||| ||||||||||||||
Sbjct: 1024 tcatacatatatccagccacatgtt 1048
to top
>gb|AC169981.3| Mus musculus BAC clone RP24-346E16 from chromosome 6, complete sequence
          Length = 150872

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 472   tcatacatatctccagccacatgtt 496
             |||||||||| ||||||||||||||
Sbjct: 45951 tcatacatatatccagccacatgtt 45975
to top
>gb|AC079750.5| Homo sapiens BAC clone RP11-33L3 from 2, complete sequence
          Length = 103089

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    gcttttatgatagaaataata 30
             |||||||||||||||||||||
Sbjct: 46170 gcttttatgatagaaataata 46150
to top
>dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLM24
          Length = 87487

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 13   tttatgatagaaataataaaa 33
            |||||||||||||||||||||
Sbjct: 9619 tttatgatagaaataataaaa 9639
to top
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 164    agttgaagaatatgtaggttttctt 188
              |||||||||| ||||||||||||||
Sbjct: 313473 agttgaagaaaatgtaggttttctt 313449
to top
>gb|AC005200.1| Homo sapiens chromosome 5, P1 clone 793c5 (LBNL H57), complete sequence
          Length = 79305

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ttttatgatagaaataataa 31
             ||||||||||||||||||||
Sbjct: 13493 ttttatgatagaaataataa 13512
to top
>gb|AC150386.2| Branchiostoma floridae clone CH302-103G16, complete sequence
          Length = 195926

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 594    ggagccggtgccaccaccga 613
              ||||||||||||||||||||
Sbjct: 156214 ggagccggtgccaccaccga 156233
to top
>ref|XM_960728.1| Neurospora crassa OR74A hypothetical protein (NCU00681.1) partial
           mRNA
          Length = 3549

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 503 ctggaagagggaggccttgg 522
           ||||||||||||||||||||
Sbjct: 111 ctggaagagggaggccttgg 92
to top
>ref|XM_954671.1| Neurospora crassa OR74A hypothetical protein (NCU02338.1) partial
           mRNA
          Length = 843

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 509 gagggaggccttgggcgatg 528
           ||||||||||||||||||||
Sbjct: 265 gagggaggccttgggcgatg 246
to top
>ref|XM_324860.1| Neurospora crassa OR74A hypothetical protein (NCU00681.1) partial
           mRNA
          Length = 3549

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 503 ctggaagagggaggccttgg 522
           ||||||||||||||||||||
Sbjct: 111 ctggaagagggaggccttgg 92
to top
>ref|XM_331113.1| Neurospora crassa OR74A hypothetical protein (NCU02338.1) partial
           mRNA
          Length = 843

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 509 gagggaggccttgggcgatg 528
           ||||||||||||||||||||
Sbjct: 265 gagggaggccttgggcgatg 246
to top
>gb|AC072048.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-189E15, complete
              sequence
          Length = 208661

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     agaaataataaaatgaaaat 40
              ||||||||||||||||||||
Sbjct: 130171 agaaataataaaatgaaaat 130152
to top
>gb|AC093477.6| Mus musculus chromosome 1, clone RP23-58B6, complete sequence
          Length = 225321

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    ttgaagagcacaaacatgat 278
              ||||||||||||||||||||
Sbjct: 180691 ttgaagagcacaaacatgat 180672
to top
>gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosome 12, complete
             sequence
          Length = 150375

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    tagaaataataaaatgaaaa 39
             ||||||||||||||||||||
Sbjct: 54063 tagaaataataaaatgaaaa 54044
to top
>emb|Z67990.1|CEF02D10 Caenorhabditis elegans Cosmid F02D10, complete sequence
          Length = 25359

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   gaactcgtcgtcgttaagca 424
             ||||||||||||||||||||
Sbjct: 23437 gaactcgtcgtcgttaagca 23418
to top
>emb|BX927322.12| Zebrafish DNA sequence from clone CH211-101J8 in linkage group 21,
            complete sequence
          Length = 110730

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   atagaaataataaaatgaaa 38
            ||||||||||||||||||||
Sbjct: 6531 atagaaataataaaatgaaa 6550
to top
>emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome; segment 1/7
          Length = 349391

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    tggcaaactccttctccgtc 243
              ||||||||||||||||||||
Sbjct: 340353 tggcaaactccttctccgtc 340372
to top
>gb|AC163296.2| Mus musculus BAC clone RP23-135F1 from chromosome 12, complete sequence
          Length = 226483

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    tagaaataataaaatgaaaa 39
             ||||||||||||||||||||
Sbjct: 23725 tagaaataataaaatgaaaa 23706
to top
>gb|AC123904.5| Homo sapiens 12 BAC RP11-361A23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 125400

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    aaacatgatgatatccaagg 289
              ||||||||||||||||||||
Sbjct: 120643 aaacatgatgatatccaagg 120624
to top
>gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete sequence
          Length = 129658

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    acaaacatgatgatatccaa 287
              ||||||||||||||||||||
Sbjct: 111959 acaaacatgatgatatccaa 111978
to top
>dbj|AB057033.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK101
          Length = 734

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 366 ttttgggagagcgttgtggc 385
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
to top
>dbj|AB057031.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK89
          Length = 734

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 366 ttttgggagagcgttgtggc 385
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
to top
>dbj|AB057016.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK41
          Length = 728

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 366 ttttgggagagcgttgtggc 385
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
to top
>dbj|AB057015.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK35
          Length = 734

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 366 ttttgggagagcgttgtggc 385
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
to top
>gb|AC104246.3| Homo sapiens chromosome 8, clone RP11-1073L1, complete sequence
          Length = 170284

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     gatagaaataataaaatgaa 37
              ||||||||||||||||||||
Sbjct: 152801 gatagaaataataaaatgaa 152820
to top
>gb|AC027141.7| Homo sapiens chromosome 18, clone RP11-29E21, complete sequence
          Length = 146286

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 24    aataataaaatgaaaatntaaat 46
             ||||||||||||||||| |||||
Sbjct: 16579 aataataaaatgaaaatttaaat 16601
to top
>gb|AC090365.7| Homo sapiens chromosome 18, clone RP11-885L22, complete sequence
          Length = 125792

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 24    aataataaaatgaaaatntaaat 46
             ||||||||||||||||| |||||
Sbjct: 35428 aataataaaatgaaaatttaaat 35406
to top
>gb|AC008608.7| Homo sapiens chromosome 5 clone CTB-113I20, complete sequence
          Length = 160672

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ttttatgatagaaataataa 31
             ||||||||||||||||||||
Sbjct: 23672 ttttatgatagaaataataa 23691
to top
>gb|AF269342.1|AF269342 Staphylococcus epidermidis strain SR1 clone step.1002d03 genomic
           sequence
          Length = 3734

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 aaaagttgaagaatatgtag 180
           ||||||||||||||||||||
Sbjct: 177 aaaagttgaagaatatgtag 158
to top
>gb|AF269321.1|AF269321 Staphylococcus epidermidis strain SR1 clone step.1002a08 genomic
            sequence
          Length = 3383

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 161  aaaagttgaagaatatgtag 180
            ||||||||||||||||||||
Sbjct: 2238 aaaagttgaagaatatgtag 2257
to top
>gb|AC046174.6| Homo sapiens chromosome 8, clone RP11-621B3, complete sequence
          Length = 161619

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    gatagaaataataaaatgaa 37
             ||||||||||||||||||||
Sbjct: 41177 gatagaaataataaaatgaa 41196
to top
>gb|AC158573.5| Mus musculus chromosome 8, clone RP23-101F17, complete sequence
          Length = 204567

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     agaaataataaaatgaaaat 40
              ||||||||||||||||||||
Sbjct: 124180 agaaataataaaatgaaaat 124199
to top
>gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, complete sequence
          Length = 145918

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    agaaataataaaatgaaaat 40
             ||||||||||||||||||||
Sbjct: 79570 agaaataataaaatgaaaat 79589
to top
>gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 226538

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     agaaataataaaatgaaaat 40
              ||||||||||||||||||||
Sbjct: 208362 agaaataataaaatgaaaat 208381
to top
>dbj|AB183825.1| Iris hollandica IhCOMT mRNA for Caffeic acid O-methyltransferase,
           complete cds
          Length = 1303

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 451 gcatctccagtgggtatactctcatacatatctcca 486
           ||||||||| |||| | ||||||| |||||||||||
Sbjct: 788 gcatctccactgggaacactctcaaacatatctcca 753
to top
>gb|AC078842.2|AC078842 Homo sapiens chromosome 7 clone RP11-102G17, complete sequence
          Length = 173844

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 17   tgatagaaataataaaatgaaaat 40
            ||||| ||||||||||||||||||
Sbjct: 3084 tgataaaaataataaaatgaaaat 3061
to top
>gb|AF270232.1|AF270232 Staphylococcus epidermidis strain SR1 clone step.1055e11 genomic
            sequence
          Length = 2995

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  aaaagttgaagaatatgtag 180
            ||||||||||||||||||||
Sbjct: 1549 aaaagttgaagaatatgtag 1530
to top
>gb|AC067918.1|AC067918 Neurospora crassa chromosome 7, clone G23-F12, complete sequence
          Length = 42412

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 509  gagggaggccttgggcgatg 528
            ||||||||||||||||||||
Sbjct: 5744 gagggaggccttgggcgatg 5763
to top
>emb|BX908788.1| Neurospora crassa DNA linkage group VII BAC clone B23N11
          Length = 46353

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 509   gagggaggccttgggcgatg 528
             ||||||||||||||||||||
Sbjct: 39948 gagggaggccttgggcgatg 39967
to top
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    aaaagttgaagaatatgtag 180
              ||||||||||||||||||||
Sbjct: 226670 aaaagttgaagaatatgtag 226689
to top
>emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in linkage group 18,
              complete sequence
          Length = 248419

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    cggtaaatccagcttgtttg 216
              ||||||||||||||||||||
Sbjct: 147510 cggtaaatccagcttgtttg 147491
to top
>emb|AL096821.3|CNS00YVG Human chromosome 14 DNA sequence BAC R-677J5 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 209111

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   tagaaataataaaatgaaaa 39
            ||||||||||||||||||||
Sbjct: 1709 tagaaataataaaatgaaaa 1728
to top
>emb|AL132719.4|CNS01DTH Human chromosome 14 DNA sequence BAC R-1082A3 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171505

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tagaaataataaaatgaaaa 39
              ||||||||||||||||||||
Sbjct: 153269 tagaaataataaaatgaaaa 153288
to top
>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     atgatagaaataataaaatg 35
              ||||||||||||||||||||
Sbjct: 940104 atgatagaaataataaaatg 940123
to top
>gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete sequence
          Length = 162405

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   ggctagcctggcaaactcct 235
             ||||||||||||||||||||
Sbjct: 87830 ggctagcctggcaaactcct 87811
to top
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    aaaagttgaagaatatgtag 180
              ||||||||||||||||||||
Sbjct: 342005 aaaagttgaagaatatgtag 342024
to top
>dbj|AP005671.2| Homo sapiens genomic DNA, chromosome 18 clone:CTD-3096M3, complete
             sequence
          Length = 86000

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   tcccttgaagagcacaaaca 274
             ||||||||||||||||||||
Sbjct: 62557 tcccttgaagagcacaaaca 62538
to top
>gb|AC131584.7| Mus musculus chromosome 1, clone RP23-215C21, complete sequence
          Length = 197346

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ttgaagagcacaaacatgat 278
             ||||||||||||||||||||
Sbjct: 79901 ttgaagagcacaaacatgat 79882
to top
>emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 in linkage group 18,
              complete sequence
          Length = 193827

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    cggtaaatccagcttgtttg 216
              ||||||||||||||||||||
Sbjct: 173244 cggtaaatccagcttgtttg 173225
to top
>gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosome 12, complete sequence
          Length = 193547

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tagaaataataaaatgaaaa 39
              ||||||||||||||||||||
Sbjct: 143301 tagaaataataaaatgaaaa 143282
to top
>emb|AL805968.6| Mouse DNA sequence from clone RP23-424G19 on chromosome 4, complete
              sequence
          Length = 171320

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     atagaaataataaaatgaaa 38
              ||||||||||||||||||||
Sbjct: 159096 atagaaataataaaatgaaa 159077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,836,982
Number of Sequences: 3902068
Number of extensions: 4836982
Number of successful extensions: 103996
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103664
Number of HSP's gapped (non-prelim): 328
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top