ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28d19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
2dbj|AK063569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
5emb|AL713935.5|CNS07YPG Oryza sativa chromosome 12, . BAC OJ1427... 58 2e-05
6gb|AC027314.5| Homo sapiens chromosome 5 clone CTC-286C20, compl... 44 0.35
7gb|AC008570.6| Homo sapiens chromosome 5 clone CTC-549A4, comple... 44 0.35
8emb|AL929397.6| Mouse DNA sequence from clone RP23-87N9 on chrom... 42 1.4
9gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 5.5
10gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome... 40 5.5
11gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosom... 40 5.5
12gb|AC083861.2|AC083861 Homo sapiens chromosome 7 clone RP11-164E... 40 5.5
13gb|AC007444.1|AC007444 Homo sapiens clone RP11-340F1 from 7p14-1... 40 5.5
14gb|AC006550.2|F10O3 Arabidopsis thaliana chromosome 1 BAC F10O3 ... 40 5.5 
>dbj|AK103802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033146H17, full
           insert sequence
          Length = 1428

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                       
Query: 299 ggaaagacaatatggtccctcttgggagttcccagttctttttgaatatcatgcttcctg 358
           ||||||| ||| |||| ||||  ||||||||||||||||   | ||| ||||||||| ||
Sbjct: 968 ggaaagataatgtggttcctcgcgggagttcccagttctggatcaatctcatgcttcatg 909

                               
Query: 359 cagtagatcaaaatttgatc 378
           ||||||||||||||||||||
Sbjct: 908 cagtagatcaaaatttgatc 889



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 78   tggatcgtcagtcatcaagccaaccgcaggagcctgg 114
            ||||| ||||||||||||||||||| |||||||||||
Sbjct: 1225 tggatggtcagtcatcaagccaaccacaggagcctgg 1189
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>dbj|AK063569.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G03, full
           insert sequence
          Length = 1522

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                       
Query: 299 ggaaagacaatatggtccctcttgggagttcccagttctttttgaatatcatgcttcctg 358
           ||||||| ||| |||| ||||  ||||||||||||||||   | ||| ||||||||| ||
Sbjct: 973 ggaaagataatgtggttcctcgcgggagttcccagttctggatcaatctcatgcttcatg 914

                               
Query: 359 cagtagatcaaaatttgatc 378
           ||||||||||||||||||||
Sbjct: 913 cagtagatcaaaatttgatc 894



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 78   tggatcgtcagtcatcaagccaaccgcaggagcctgg 114
            ||||| ||||||||||||||||||| |||||||||||
Sbjct: 1230 tggatggtcagtcatcaagccaaccacaggagcctgg 1194
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                    
Query: 78      tggatcgtcagtcatcaagccaaccgcaggagcctgg 114
               ||||| ||||||||||||||||||| |||||||||||
Sbjct: 6759373 tggatggtcagtcatcaagccaaccacaggagcctgg 6759409



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 357     tgcagtagatcaaaatttgatc 378
               ||||||||||||||||||||||
Sbjct: 6759771 tgcagtagatcaaaatttgatc 6759792



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                           
Query: 299     ggaaagacaatatggtccctcttgggagttcccagttctttttgaatatcatgcttcctg 358
               ||||||| ||| |||| ||||  ||||||||||||||||   | ||| ||||||||||||
Sbjct: 6759630 ggaaagataatgtggttcctcgcgggagttcccagttctggatcaatctcatgcttcctg 6759689
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                    
Query: 78      tggatcgtcagtcatcaagccaaccgcaggagcctgg 114
               ||||| ||||||||||||||||||| |||||||||||
Sbjct: 6759252 tggatggtcagtcatcaagccaaccacaggagcctgg 6759288



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 357     tgcagtagatcaaaatttgatc 378
               ||||||||||||||||||||||
Sbjct: 6759650 tgcagtagatcaaaatttgatc 6759671



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                           
Query: 299     ggaaagacaatatggtccctcttgggagttcccagttctttttgaatatcatgcttcctg 358
               ||||||| ||| |||| ||||  ||||||||||||||||   | ||| ||||||||||||
Sbjct: 6759509 ggaaagataatgtggttcctcgcgggagttcccagttctggatcaatctcatgcttcctg 6759568
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>emb|AL713935.5|CNS07YPG Oryza sativa chromosome 12, . BAC OJ1427_C06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 88558

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 78    tggatcgtcagtcatcaagccaaccgcaggagcctgg 114
             ||||| ||||||||||||||||||| |||||||||||
Sbjct: 59155 tggatggtcagtcatcaagccaaccacaggagcctgg 59119



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 357   tgcagtagatcaaaatttgatc 378
             ||||||||||||||||||||||
Sbjct: 58757 tgcagtagatcaaaatttgatc 58736



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                         
Query: 299   ggaaagacaatatggtccctcttgggagttcccagttctttttgaatatcatgcttcctg 358
             ||||||| ||| |||| ||||  ||||||||||||||||   | ||| ||||||||||||
Sbjct: 58898 ggaaagataatgtggttcctcgcgggagttcccagttctggatcaatctcatgcttcctg 58839
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>gb|AC027314.5| Homo sapiens chromosome 5 clone CTC-286C20, complete sequence
          Length = 150668

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 260   cctctatgcctttctgctgcac 281
             ||||||||||||||||||||||
Sbjct: 47424 cctctatgcctttctgctgcac 47445
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>gb|AC008570.6| Homo sapiens chromosome 5 clone CTC-549A4, complete sequence
          Length = 127392

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 260   cctctatgcctttctgctgcac 281
             ||||||||||||||||||||||
Sbjct: 11586 cctctatgcctttctgctgcac 11565
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>emb|AL929397.6| Mouse DNA sequence from clone RP23-87N9 on chromosome 4, complete
             sequence
          Length = 48661

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 352   cttcctgcagtagatcaaaat 372
             |||||||||||||||||||||
Sbjct: 44108 cttcctgcagtagatcaaaat 44128
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 330     ccagttctttttgaatatca 349
               ||||||||||||||||||||
Sbjct: 1771325 ccagttctttttgaatatca 1771306
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>gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome 13, complete sequence
          Length = 170866

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   ctcttgggagttcccagttc 336
             ||||||||||||||||||||
Sbjct: 74267 ctcttgggagttcccagttc 74248
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>gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosome 14, complete
             sequence
          Length = 211315

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   cccagttctttttgaatatc 348
             ||||||||||||||||||||
Sbjct: 58716 cccagttctttttgaatatc 58697
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>gb|AC083861.2|AC083861 Homo sapiens chromosome 7 clone RP11-164E6, complete sequence
          Length = 147288

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   cctctatgcctttctgctgc 279
             ||||||||||||||||||||
Sbjct: 45432 cctctatgcctttctgctgc 45451
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>gb|AC007444.1|AC007444 Homo sapiens clone RP11-340F1 from 7p14-15, complete sequence
          Length = 156940

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    cctctatgcctttctgctgc 279
              ||||||||||||||||||||
Sbjct: 150411 cctctatgcctttctgctgc 150430
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>gb|AC006550.2|F10O3 Arabidopsis thaliana chromosome 1 BAC F10O3 sequence, complete sequence
          Length = 78341

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ttttcttttgtgttctcgag 22
             ||||||||||||||||||||
Sbjct: 59431 ttttcttttgtgttctcgag 59450


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,306,865
Number of Sequences: 3902068
Number of extensions: 3306865
Number of successful extensions: 52880
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52804
Number of HSP's gapped (non-prelim): 76
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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