ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27o19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016206.1| Zea mays clone Contig39 mRNA sequence 98 2e-17
2gb|AY105020.1| Zea mays PCO098402 mRNA sequence 98 2e-17
3ref|NM_104563.3| Arabidopsis thaliana structural constituent of ... 86 8e-14
4gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 genom... 86 8e-14
5gb|AY091167.1| Arabidopsis thaliana putative 60S ribosomal prote... 86 8e-14
6gb|AY050840.1| Arabidopsis thaliana putative 60S ribosomal prote... 86 8e-14
7emb|BX814226.1|CNS0AC0R Arabidopsis thaliana Full-length cDNA Co... 86 8e-14
8emb|BX841874.1|CNS09Y44 Arabidopsis thaliana Full-length cDNA Co... 86 8e-14
9gb|AY086851.1| Arabidopsis thaliana clone 28545 mRNA, complete s... 86 8e-14
10ref|NM_196917.1| Oryza sativa (japonica cultivar-group) 60S ribo... 84 3e-13
11gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 geno... 84 3e-13
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 84 3e-13
13gb|AF093630.1|AF093630 Oryza sativa 60S ribosomal protein L21 (R... 84 3e-13
14gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 84 3e-13
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 1e-12
16gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome... 82 1e-12
17gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare str... 82 1e-12
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
19dbj|AK120267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
20gb|AY107603.1| Zea mays PCO098394 mRNA sequence 82 1e-12
21ref|NM_104579.3| Arabidopsis thaliana structural constituent of ... 78 2e-11
22gb|AC079732.4|AC079732 Arabidopsis thaliana chromosome 1 BAC F12... 78 2e-11
23gb|BT004794.1| Arabidopsis thaliana At1g57860 gene, complete cds 78 2e-11
24gb|AF475114.1| Triticum aestivum 60s ribosomal protein L21 mRNA,... 74 3e-10
25gb|AF457939.1| Zea mays clone cho1c.pk003.g2, mRNA sequence 56 7e-05
26dbj|AP004496.1| Lotus japonicus genomic DNA, chromosome 1, clone... 52 0.001
27gb|AC163337.2| Mus musculus chromosome 5, clone RP23-297I15, com... 42 1.1
28gb|BC013343.1| Mus musculus 4-hydroxyphenylpyruvic acid dioxygen... 42 1.1
29ref|NM_008277.1| Mus musculus 4-hydroxyphenylpyruvic acid dioxyg... 42 1.1
30gb|AC005552.3| Homo sapiens chromosome 17, clone RP11-212E8, com... 42 1.1
31dbj|AK149416.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 42 1.1
32gb|AC110605.5| Homo sapiens chromosome 17, clone CTD-2317L23, co... 42 1.1
33dbj|D29987.1|MUS4HD Mus musculus mRNA for 4-hydroxyphenylpyruvat... 42 1.1
34gb|AC130722.3| Mus musculus BAC clone RP24-358L24 from 3, comple... 42 1.1
35emb|X59530.1|MMFPROT M.musculus mRNA for F protein 42 1.1
36gb|AC144486.2| Gasterosteus aculeatus clone CH213-169J23, comple... 40 4.3
37emb|CR394556.10| Zebrafish DNA sequence from clone DKEY-79P17 in... 40 4.3
38gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complet... 40 4.3
39emb|AL591501.7| Human DNA sequence from clone RP11-305F18 on chr... 40 4.3
40emb|AL160155.19| Human DNA sequence from clone RP11-461N23 on ch... 40 4.3
41gb|AF535728.1| HIV-1 isolate 95USMA950911sa from USA envelope gl... 40 4.3
42gb|AF535724.1| HIV-1 isolate 95USMA950911s2 from USA envelope gl... 40 4.3
43gb|AF535645.1| HIV-1 isolate 95USMA950828pc from USA envelope gl... 40 4.3
44gb|AF535643.1| HIV-1 isolate 95USMA950828p9 from USA envelope gl... 40 4.3
45gb|AF535622.1| HIV-1 isolate 95USMA950821sf from USA envelope gl... 40 4.3
46gb|AF535621.1| HIV-1 isolate 95USMA950821sc from USA envelope gl... 40 4.3
47gb|AF535599.1| HIV-1 isolate 95USMA950821p3 from USA envelope gl... 40 4.3
48gb|AF535556.1| HIV-1 isolate 95USMA950731s3 from USA envelope gl... 40 4.3
49gb|AF535539.1| HIV-1 isolate 95USMA950731p5 from USA envelope gl... 40 4.3
50gb|AF535829.1| HIV-1 isolate 95USMA951129c1 from USA envelope gl... 40 4.3
51gb|AF535803.1| HIV-1 isolate 95USMA951101c7 from USA envelope gl... 40 4.3
52gb|AF535770.1| HIV-1 isolate 95USMA950925c3 from USA envelope gl... 40 4.3
53gb|AF535732.1| HIV-1 isolate 95USMA950920c1 from USA envelope gl... 40 4.3
54gb|AF535697.1| HIV-1 isolate 95USMA950911c6 from USA envelope gl... 40 4.3
55gb|AF535631.1| HIV-1 isolate 95USMA950828c8 from USA envelope gl... 40 4.3
56gb|AF535585.1| HIV-1 isolate 95USMA950821c2 from USA envelope gl... 40 4.3
57gb|AF535531.1| HIV-1 isolate 95USMA950731c9 from USA envelope gl... 40 4.3
58gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complet... 40 4.3
59emb|CR376848.7| Zebrafish DNA sequence from clone CH211-197K23 i... 40 4.3
60gb|AC092309.3| Homo sapiens chromosome 19 clone LLNLR-276F4, com... 40 4.3
61gb|AC072031.18| Homo sapiens 3 BAC RP11-392N12 (Roswell Park Can... 40 4.3
62gb|AC154533.2| Mus musculus BAC clone RP23-469N16 from 16, compl... 40 4.3
63gb|AC115763.10| Mus musculus chromosome 15, clone RP23-64J7, com... 40 4.3
64gb|DQ314886.1| Homo sapiens protein phosphatase 1, regulatory (i... 40 4.3
65emb|AL583885.17| Mouse DNA sequence from clone RP23-323K24 on ch... 40 4.3
66emb|AL773531.6| Mouse DNA sequence from clone RP23-179F21 on chr... 40 4.3
67emb|AL928797.6| Mouse DNA sequence from clone RP23-178B19 on chr... 40 4.3 
>gb|BT016206.1| Zea mays clone Contig39 mRNA sequence
          Length = 748

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 73/81 (90%)
 Strand = Plus / Minus

                                                                       
Query: 217 ctagtaaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgat 276
           ||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||| 
Sbjct: 558 ctagtaaccgcccttgagatcgttgaccacatcataaggaataggagtgactgtctcgag 499

                                
Query: 277 tgtggtaccctcgaccatgaa 297
           ||| | |||||| ||||||||
Sbjct: 498 tgtagcaccctcaaccatgaa 478
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>gb|AY105020.1| Zea mays PCO098402 mRNA sequence
          Length = 784

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 73/81 (90%)
 Strand = Plus / Minus

                                                                       
Query: 217 ctagtaaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgat 276
           ||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||| 
Sbjct: 594 ctagtaaccgcccttgagatcgttgaccacatcataaggaataggagtgactgtctcgag 535

                                
Query: 277 tgtggtaccctcgaccatgaa 297
           ||| | |||||| ||||||||
Sbjct: 534 tgtagcaccctcaaccatgaa 514
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>ref|NM_104563.3| Arabidopsis thaliana structural constituent of ribosome AT1G57660
           mRNA, complete cds
          Length = 715

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 221 taaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattgtg 280
           ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||| 
Sbjct: 538 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctccaatgtc 479

                                  
Query: 281 gtaccctcgaccatgaaccccgg 303
            |||| ||||||||||| |||||
Sbjct: 478 ataccttcgaccatgaaacccgg 456
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>gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 genomic sequence, complete
             sequence
          Length = 90448

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                         
Query: 221   taaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattgtg 280
             ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||| 
Sbjct: 47003 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctccaatgtc 46944

                                    
Query: 281   gtaccctcgaccatgaaccccgg 303
              |||| ||||||||||| |||||
Sbjct: 46943 ataccttcgaccatgaaacccgg 46921
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>gb|AY091167.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g57660)
           mRNA, complete cds
          Length = 526

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 221 taaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattgtg 280
           ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||| 
Sbjct: 491 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctccaatgtc 432

                                  
Query: 281 gtaccctcgaccatgaaccccgg 303
            |||| ||||||||||| |||||
Sbjct: 431 ataccttcgaccatgaaacccgg 409
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>gb|AY050840.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g57660)
           mRNA, complete cds
          Length = 681

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 221 taaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattgtg 280
           ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||| 
Sbjct: 538 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctccaatgtc 479

                                  
Query: 281 gtaccctcgaccatgaaccccgg 303
            |||| ||||||||||| |||||
Sbjct: 478 ataccttcgaccatgaaacccgg 456
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>emb|BX814226.1|CNS0AC0R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB62ZA08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 674

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 221 taaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattgtg 280
           ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||| 
Sbjct: 497 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctccaatgtc 438

                                  
Query: 281 gtaccctcgaccatgaaccccgg 303
            |||| ||||||||||| |||||
Sbjct: 437 ataccttcgaccatgaaacccgg 415
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>emb|BX841874.1|CNS09Y44 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH60ZG03 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 658

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 221 taaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattgtg 280
           ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||| 
Sbjct: 533 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctccaatgtc 474

                                  
Query: 281 gtaccctcgaccatgaaccccgg 303
            |||| ||||||||||| |||||
Sbjct: 473 ataccttcgaccatgaaacccgg 451
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>gb|AY086851.1| Arabidopsis thaliana clone 28545 mRNA, complete sequence
          Length = 627

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 221 taaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattgtg 280
           ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||| 
Sbjct: 535 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctccaatgtc 476

                                  
Query: 281 gtaccctcgaccatgaaccccgg 303
            |||| ||||||||||| |||||
Sbjct: 475 ataccttcgaccatgaaacccgg 453
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>ref|NM_196917.1| Oryza sativa (japonica cultivar-group) 60S ribosomal protein L21
           (OSJNBa0006L06.3), mRNA
          Length = 783

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                       
Query: 216 cctagtaaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcga 275
           |||||||||||||||||||||||||||||||||| || || ||||| ||||| ||||| |
Sbjct: 573 cctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgacagtctcca 514

                                 
Query: 276 ttgtggtaccctcgaccatgaa 297
            ||| | |||||| ||||||||
Sbjct: 513 gtgttgcaccctcaaccatgaa 492
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>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete
             sequence
          Length = 162339

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                         
Query: 216   cctagtaaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcga 275
             |||||||||||||||||||||||||||||||||| || || ||||| ||||| ||||| |
Sbjct: 14081 cctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgacagtctcca 14140

                                   
Query: 276   ttgtggtaccctcgaccatgaa 297
              ||| | |||||| ||||||||
Sbjct: 14141 gtgttgcaccctcaaccatgaa 14162
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                            
Query: 216      cctagtaaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcga 275
                |||||||||||||||||||||||||||||||||| || || ||||| ||||| ||||| |
Sbjct: 16669564 cctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgacagtctcca 16669623

                                      
Query: 276      ttgtggtaccctcgaccatgaa 297
                 ||| | |||||| ||||||||
Sbjct: 16669624 gtgttgcaccctcaaccatgaa 16669645
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>gb|AF093630.1|AF093630 Oryza sativa 60S ribosomal protein L21 (RPL21) mRNA, complete cds
          Length = 753

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                       
Query: 216 cctagtaaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcga 275
           |||||||||||||||||||||||||||||||||| || || ||||| ||||| ||||| |
Sbjct: 512 cctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgacagtctcca 453

                                 
Query: 276 ttgtggtaccctcgaccatgaa 297
            ||| | |||||| ||||||||
Sbjct: 452 gtgttgcaccctcaaccatgaa 431
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                            
Query: 216      cctagtaaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcga 275
                |||||||||||||||||||||||||||||||||| || || ||||| ||||| ||||| |
Sbjct: 16678604 cctagtaaccacccttgagatcattgaccacatcgtacgggatgggggtgacagtctcca 16678663

                                      
Query: 276      ttgtggtaccctcgaccatgaa 297
                 ||| | |||||| ||||||||
Sbjct: 16678664 gtgttgcaccctcaaccatgaa 16678685
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                            
Query: 217     ctagtaaccacccttgagatcattgaccacatcataaggaatggg 261
               |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2248334 ctagtaaccacccttgagatcattgaccacatcatacggaatggg 2248290
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>gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030C11,
              complete sequence
          Length = 156647

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                           
Query: 217    ctagtaaccacccttgagatcattgaccacatcataaggaatggg 261
              |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 138628 ctagtaaccacccttgagatcattgaccacatcatacggaatggg 138584
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>gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0081A17, from chromosome 3, complete sequence
          Length = 134821

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                          
Query: 217   ctagtaaccacccttgagatcattgaccacatcataaggaatggg 261
             |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 77722 ctagtaaccacccttgagatcattgaccacatcatacggaatggg 77766
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                            
Query: 217     ctagtaaccacccttgagatcattgaccacatcataaggaatggg 261
               |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2248346 ctagtaaccacccttgagatcattgaccacatcatacggaatggg 2248302
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>dbj|AK120267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047I10, full
            insert sequence
          Length = 2007

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                         
Query: 217  ctagtaaccacccttgagatcattgaccacatcataaggaatggg 261
            |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1636 ctagtaaccacccttgagatcattgaccacatcatacggaatggg 1592
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>gb|AY107603.1| Zea mays PCO098394 mRNA sequence
          Length = 965

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 71/81 (87%)
 Strand = Plus / Minus

                                                                       
Query: 217 ctagtaaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgat 276
           ||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||| | 
Sbjct: 612 ctagtaaccccccttgagatcatttaccacatcatagggaataggagtaacggtctcaag 553

                                
Query: 277 tgtggtaccctcgaccatgaa 297
           ||| | |||||| ||||||||
Sbjct: 552 tgtagcaccctcaaccatgaa 532
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>ref|NM_104579.3| Arabidopsis thaliana structural constituent of ribosome AT1G57860
           mRNA, complete cds
          Length = 669

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                       
Query: 221 taaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattgtg 280
           ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||| 
Sbjct: 529 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctccaatgtc 470

                                  
Query: 281 gtaccctcgaccatgaaccccgg 303
            |||| || |||||||| |||||
Sbjct: 469 ataccttcaaccatgaaacccgg 447
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>gb|AC079732.4|AC079732 Arabidopsis thaliana chromosome 1 BAC F12K22 genomic sequence,
            complete sequence
          Length = 43985

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                        
Query: 221  taaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattgtg 280
            ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||| 
Sbjct: 6323 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctccaatgtc 6264

                                   
Query: 281  gtaccctcgaccatgaaccccgg 303
             |||| || |||||||| |||||
Sbjct: 6263 ataccttcaaccatgaaacccgg 6241
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>gb|BT004794.1| Arabidopsis thaliana At1g57860 gene, complete cds
          Length = 495

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                       
Query: 221 taaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattgtg 280
           ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | ||| 
Sbjct: 491 taaccacccttgagatcgttgacaacatcgtaaggaatgggagtgacagtctccaatgtc 432

                                  
Query: 281 gtaccctcgaccatgaaccccgg 303
            |||| || |||||||| |||||
Sbjct: 431 ataccttcaaccatgaaacccgg 409
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>gb|AF475114.1| Triticum aestivum 60s ribosomal protein L21 mRNA, partial cds
          Length = 519

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 217 ctagtaaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctcgat 276
           |||||||||||| |||||||| ||||| || || || || ||||| ||||| ||||||||
Sbjct: 519 ctagtaaccaccnttgagatcgttgacgacgtcgtacgggatgggggtgaccgtctcgat 460

                                   
Query: 277 tgtggtaccctcgaccatgaaccc 300
            ||||| ||||| |||||||||||
Sbjct: 459 ggtggtgccctccaccatgaaccc 436
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>gb|AF457939.1| Zea mays clone cho1c.pk003.g2, mRNA sequence
          Length = 526

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 63/72 (87%), Gaps = 2/72 (2%)
 Strand = Plus / Minus

                                                                       
Query: 227 cccttgagatcattgaccacatcataaggaatgggagtgacggtctcgattg-tggtacc 285
           |||||||||||||||||||||||||| || || ||||| |||||||| | || || | ||
Sbjct: 525 cccttgagatcattgaccacatcatatgggat-ggagttacggtctcaaatgttgttgcc 467

                       
Query: 286 ctcgaccatgaa 297
           ||||||||||||
Sbjct: 466 ctcgaccatgaa 455
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>dbj|AP004496.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT11C13, TM0029a,
             complete sequence
          Length = 53909

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 216   cctagtaaccacccttgagatcattgaccacatcataaggaatgggagtgacggtctc 273
             ||||||| || || ||||| ||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 15872 cctagtagccccctttgaggtcattaaccacatcatatggaataggagtgacagtctc 15815
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>gb|AC163337.2| Mus musculus chromosome 5, clone RP23-297I15, complete sequence
          Length = 154578

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 228    ccttgagatcattgaccacat 248
              |||||||||||||||||||||
Sbjct: 145540 ccttgagatcattgaccacat 145560
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>gb|BC013343.1| Mus musculus 4-hydroxyphenylpyruvic acid dioxygenase, mRNA (cDNA
           clone MGC:14040 IMAGE:4193670), complete cds
          Length = 1432

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 228 ccttgagatcattgaccacat 248
           |||||||||||||||||||||
Sbjct: 565 ccttgagatcattgaccacat 585
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>ref|NM_008277.1| Mus musculus 4-hydroxyphenylpyruvic acid dioxygenase (Hpd), mRNA
          Length = 1432

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 228 ccttgagatcattgaccacat 248
           |||||||||||||||||||||
Sbjct: 565 ccttgagatcattgaccacat 585
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>gb|AC005552.3| Homo sapiens chromosome 17, clone RP11-212E8, complete sequence
          Length = 165837

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 47     aaggaaatagcacagtatagcattt 71
              ||||||||||||||||| |||||||
Sbjct: 160411 aaggaaatagcacagtaaagcattt 160435
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>dbj|AK149416.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730007B19
           product:4-hydroxyphenylpyruvic acid dioxygenase, full
           insert sequence
          Length = 1400

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 228 ccttgagatcattgaccacat 248
           |||||||||||||||||||||
Sbjct: 579 ccttgagatcattgaccacat 599
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>gb|AC110605.5| Homo sapiens chromosome 17, clone CTD-2317L23, complete sequence
          Length = 60418

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 47    aaggaaatagcacagtatagcattt 71
             ||||||||||||||||| |||||||
Sbjct: 23566 aaggaaatagcacagtaaagcattt 23590
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>dbj|D29987.1|MUS4HD Mus musculus mRNA for 4-hydroxyphenylpyruvate dioxygenase, complete
           cds
          Length = 1399

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 228 ccttgagatcattgaccacat 248
           |||||||||||||||||||||
Sbjct: 579 ccttgagatcattgaccacat 599
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>gb|AC130722.3| Mus musculus BAC clone RP24-358L24 from 3, complete sequence
          Length = 167780

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     gtaactatatagttaacacag 31
              |||||||||||||||||||||
Sbjct: 114036 gtaactatatagttaacacag 114056
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>emb|X59530.1|MMFPROT M.musculus mRNA for F protein
          Length = 1176

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 228 ccttgagatcattgaccacat 248
           |||||||||||||||||||||
Sbjct: 531 ccttgagatcattgaccacat 551
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>gb|AC144486.2| Gasterosteus aculeatus clone CH213-169J23, complete sequence
          Length = 157502

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     atgtaactatatagttaaca 28
             ||||||||||||||||||||
Sbjct: 52230 atgtaactatatagttaaca 52211
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>emb|CR394556.10| Zebrafish DNA sequence from clone DKEY-79P17 in linkage group 9,
             complete sequence
          Length = 136863

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   gacccaacccagactactgc 144
             ||||||||||||||||||||
Sbjct: 22434 gacccaacccagactactgc 22415
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>gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complete sequence
          Length = 203829

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      atgtaactatatagttaaca 28
              ||||||||||||||||||||
Sbjct: 202918 atgtaactatatagttaaca 202899
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>emb|AL591501.7| Human DNA sequence from clone RP11-305F18 on chromosome X Contains the
             3' end of a novel gene, complete sequence
          Length = 174803

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ctactgctcagagagcaaat 157
             ||||||||||||||||||||
Sbjct: 40588 ctactgctcagagagcaaat 40607
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>emb|AL160155.19| Human DNA sequence from clone RP11-461N23 on chromosome 13 Contains part
              of a novel gene (FLJ30001), a H2A histone family,
              pseudogene, the GPR18 gene for G protein-coupled receptor
              18, the EBI2 gene for Epstein-Barr virus induced gene 2
              (lymphocyte-specific G protein-coupled receptor), two novel
              genes and a CpG island, complete sequence
          Length = 149478

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    agcaaatcctactcataaga 170
              ||||||||||||||||||||
Sbjct: 112618 agcaaatcctactcataaga 112599
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>gb|AF535728.1| HIV-1 isolate 95USMA950911sa from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 614

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 414 ctgaaggaaatagcacagta 433
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>gb|AF535724.1| HIV-1 isolate 95USMA950911s2 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 617

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 411 ctgaaggaaatagcacagta 430
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>gb|AF535645.1| HIV-1 isolate 95USMA950828pc from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 611

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 411 ctgaaggaaatagcacagta 430
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>gb|AF535643.1| HIV-1 isolate 95USMA950828p9 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 611

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 411 ctgaaggaaatagcacagta 430
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>gb|AF535622.1| HIV-1 isolate 95USMA950821sf from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 611

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 411 ctgaaggaaatagcacagta 430
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>gb|AF535621.1| HIV-1 isolate 95USMA950821sc from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 617

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 411 ctgaaggaaatagcacagta 430
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>gb|AF535599.1| HIV-1 isolate 95USMA950821p3 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 605

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 405 ctgaaggaaatagcacagta 424
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>gb|AF535556.1| HIV-1 isolate 95USMA950731s3 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 611

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 411 ctgaaggaaatagcacagta 430
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>gb|AF535539.1| HIV-1 isolate 95USMA950731p5 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 611

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 411 ctgaaggaaatagcacagta 430
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>gb|AF535829.1| HIV-1 isolate 95USMA951129c1 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 611

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 411 ctgaaggaaatagcacagta 430
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>gb|AF535803.1| HIV-1 isolate 95USMA951101c7 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 614

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 414 ctgaaggaaatagcacagta 433
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>gb|AF535770.1| HIV-1 isolate 95USMA950925c3 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 614

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 405 ctgaaggaaatagcacagta 424
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>gb|AF535732.1| HIV-1 isolate 95USMA950920c1 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 653

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 447 ctgaaggaaatagcacagta 466
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>gb|AF535697.1| HIV-1 isolate 95USMA950911c6 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 611

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 402 ctgaaggaaatagcacagta 421
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>gb|AF535631.1| HIV-1 isolate 95USMA950828c8 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 623

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 414 ctgaaggaaatagcacagta 433
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>gb|AF535585.1| HIV-1 isolate 95USMA950821c2 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 614

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 414 ctgaaggaaatagcacagta 433
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>gb|AF535531.1| HIV-1 isolate 95USMA950731c9 from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 611

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  ctgaaggaaatagcacagta 63
           ||||||||||||||||||||
Sbjct: 402 ctgaaggaaatagcacagta 421
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>gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complete sequence
          Length = 181162

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      atgtaactatatagttaaca 28
              ||||||||||||||||||||
Sbjct: 136520 atgtaactatatagttaaca 136539
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>emb|CR376848.7| Zebrafish DNA sequence from clone CH211-197K23 in linkage group 24,
              complete sequence
          Length = 218909

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    aacaccctagtaaccaccct 230
              ||||||||||||||||||||
Sbjct: 182905 aacaccctagtaaccaccct 182924
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>gb|AC092309.3| Homo sapiens chromosome 19 clone LLNLR-276F4, complete sequence
          Length = 44430

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 50    gaaatagcacagtatagcatttctgcaa 77
             ||||||||||||  ||||||||||||||
Sbjct: 21096 gaaatagcacagcctagcatttctgcaa 21069
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>gb|AC072031.18| Homo sapiens 3 BAC RP11-392N12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96901

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 14    actatatagttaacacagcacatc 37
             ||||||||||||||||||| ||||
Sbjct: 37734 actatatagttaacacagcccatc 37711
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>gb|AC154533.2| Mus musculus BAC clone RP23-469N16 from 16, complete sequence
          Length = 187213

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     tgaaggaaatagcacagtat 64
              ||||||||||||||||||||
Sbjct: 105710 tgaaggaaatagcacagtat 105729
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>gb|AC115763.10| Mus musculus chromosome 15, clone RP23-64J7, complete sequence
          Length = 243676

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     tagcacagtatagcatttct 73
              ||||||||||||||||||||
Sbjct: 224831 tagcacagtatagcatttct 224812
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>gb|DQ314886.1| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 13
             like (PPP1R13L) gene, complete cds
          Length = 27899

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 50    gaaatagcacagtatagcatttctgcaa 77
             ||||||||||||  ||||||||||||||
Sbjct: 19557 gaaatagcacagcctagcatttctgcaa 19584
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>emb|AL583885.17| Mouse DNA sequence from clone RP23-323K24 on chromosome 15, complete
              sequence
          Length = 136387

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     tagcacagtatagcatttct 73
              ||||||||||||||||||||
Sbjct: 114227 tagcacagtatagcatttct 114246
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>emb|AL773531.6| Mouse DNA sequence from clone RP23-179F21 on chromosome 2, complete
             sequence
          Length = 202065

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    tcatcattctgaaggaaata 55
             ||||||||||||||||||||
Sbjct: 37284 tcatcattctgaaggaaata 37303
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>emb|AL928797.6| Mouse DNA sequence from clone RP23-178B19 on chromosome 2, complete
              sequence
          Length = 166185

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tttctgcaaaactcatgata 88
              ||||||||||||||||||||
Sbjct: 100531 tttctgcaaaactcatgata 100550


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,587,350
Number of Sequences: 3902068
Number of extensions: 2587350
Number of successful extensions: 45823
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45694
Number of HSP's gapped (non-prelim): 128
length of query: 326
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 304
effective length of database: 17,147,199,772
effective search space: 5212748730688
effective search space used: 5212748730688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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