ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags27o09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450594.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1737 Score = 168 bits (85), Expect = 1e-38 Identities = 132/148 (89%) Strand = Plus / Minus Query: 313 gggtagcggtgggcgcatccgttccaggggttgtcggcgtcgggtccggagtcacggagc 372 |||||||||||||||||| | ||||||||||||||||| |||||| | |||||||||||| Sbjct: 1404 gggtagcggtgggcgcatgcattccaggggttgtcggcatcgggtgcagagtcacggagc 1345 Query: 373 gcgcgccagacgacgctgcaggccttgaagccggtgccgaaggcgagcatntagaggcgg 432 || ||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 1344 gcacgccagacgttactgcaagccttgaagccggtgccgaaggcaagcatccagaggcgg 1285 Query: 433 tcgccggcgcggacgcggcgcttggcct 460 || ||||| |||||||| |||||||||| Sbjct: 1284 tcaccggcacggacgcgacgcttggcct 1257
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 168 bits (85), Expect = 1e-38 Identities = 132/148 (89%) Strand = Plus / Plus Query: 313 gggtagcggtgggcgcatccgttccaggggttgtcggcgtcgggtccggagtcacggagc 372 |||||||||||||||||| | ||||||||||||||||| |||||| | |||||||||||| Sbjct: 11690439 gggtagcggtgggcgcatgcattccaggggttgtcggcatcgggtgcagagtcacggagc 11690498 Query: 373 gcgcgccagacgacgctgcaggccttgaagccggtgccgaaggcgagcatntagaggcgg 432 || ||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 11690499 gcacgccagacgttactgcaagccttgaagccggtgccgaaggcaagcatccagaggcgg 11690558 Query: 433 tcgccggcgcggacgcggcgcttggcct 460 || ||||| |||||||| |||||||||| Sbjct: 11690559 tcaccggcacggacgcgacgcttggcct 11690586
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711F01 Length = 193091 Score = 168 bits (85), Expect = 1e-38 Identities = 132/148 (89%) Strand = Plus / Plus Query: 313 gggtagcggtgggcgcatccgttccaggggttgtcggcgtcgggtccggagtcacggagc 372 |||||||||||||||||| | ||||||||||||||||| |||||| | |||||||||||| Sbjct: 125073 gggtagcggtgggcgcatgcattccaggggttgtcggcatcgggtgcagagtcacggagc 125132 Query: 373 gcgcgccagacgacgctgcaggccttgaagccggtgccgaaggcgagcatntagaggcgg 432 || ||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 125133 gcacgccagacgttactgcaagccttgaagccggtgccgaaggcaagcatccagaggcgg 125192 Query: 433 tcgccggcgcggacgcggcgcttggcct 460 || ||||| |||||||| |||||||||| Sbjct: 125193 tcaccggcacggacgcgacgcttggcct 125220
>dbj|AK105487.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B09, full insert sequence Length = 1737 Score = 168 bits (85), Expect = 1e-38 Identities = 132/148 (89%) Strand = Plus / Minus Query: 313 gggtagcggtgggcgcatccgttccaggggttgtcggcgtcgggtccggagtcacggagc 372 |||||||||||||||||| | ||||||||||||||||| |||||| | |||||||||||| Sbjct: 1404 gggtagcggtgggcgcatgcattccaggggttgtcggcatcgggtgcagagtcacggagc 1345 Query: 373 gcgcgccagacgacgctgcaggccttgaagccggtgccgaaggcgagcatntagaggcgg 432 || ||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 1344 gcacgccagacgttactgcaagccttgaagccggtgccgaaggcaagcatccagaggcgg 1285 Query: 433 tcgccggcgcggacgcggcgcttggcct 460 || ||||| |||||||| |||||||||| Sbjct: 1284 tcaccggcacggacgcgacgcttggcct 1257
>gb|AY108404.1| Zea mays PCO135296 mRNA sequence Length = 554 Score = 161 bits (81), Expect = 2e-36 Identities = 131/148 (88%) Strand = Plus / Minus Query: 313 gggtagcggtgggcgcatccgttccaggggttgtcggcgtcgggtccggagtcacggagc 372 |||||||||||| ||||||||||||| ||||||||||||||||| ||| ||| |||||| Sbjct: 226 gggtagcggtggacgcatccgttccatgggttgtcggcgtcgggcgcggcgtcgcggagc 167 Query: 373 gcgcgccagacgacgctgcaggccttgaagccggtgccgaaggcgagcatntagaggcgg 432 |||||||||||| |||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 166 gcgcgccagacgttgctgcacgccttgaaccccgtcccgaacgccagcatccagaggcgg 107 Query: 433 tcgccggcgcggacgcggcgcttggcct 460 |||||||| ||||||||||||||||||| Sbjct: 106 tcgccggcccggacgcggcgcttggcct 79
>ref|NM_196970.1| Oryza sativa (japonica cultivar-group) putative fatty acid elongase 3-ketoacyl-CoA synthase (OSJNBa0001K12.18), mRNA Length = 1867 Score = 67.9 bits (34), Expect = 3e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 ||||||||||| |||||||| |||||| || ||||||||||| ||||| ||||||||| Sbjct: 1254 cttgaagccggcgccgaaggtgagcatgaggacgcggtcgccggggcggaggcggcgctt 1195 Query: 456 ggcct 460 ||||| Sbjct: 1194 ggcct 1190
>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete sequence Length = 144724 Score = 67.9 bits (34), Expect = 3e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 ||||||||||| |||||||| |||||| || ||||||||||| ||||| ||||||||| Sbjct: 136482 cttgaagccggcgccgaaggtgagcatgaggacgcggtcgccggggcggaggcggcgctt 136541 Query: 456 ggcct 460 ||||| Sbjct: 136542 ggcct 136546
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 3e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 ||||||||||| |||||||| |||||| || ||||||||||| ||||| ||||||||| Sbjct: 17055854 cttgaagccggcgccgaaggtgagcatgaggacgcggtcgccggggcggaggcggcgctt 17055795 Query: 456 ggcct 460 ||||| Sbjct: 17055794 ggcct 17055790 Score = 48.1 bits (24), Expect = 0.025 Identities = 42/48 (87%) Strand = Plus / Plus Query: 367 cggagcgcgcgccagacgacgctgcaggccttgaagccggtgccgaag 414 |||||||||||||||||| ||||| | ||||||||||| ||||||| Sbjct: 3638993 cggagcgcgcgccagacggcgctgttgcacttgaagccggagccgaag 3639040
>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete sequence Length = 135216 Score = 67.9 bits (34), Expect = 3e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 ||||||||||| |||||||| |||||| || ||||||||||| ||||| ||||||||| Sbjct: 96346 cttgaagccggcgccgaaggtgagcatgaggacgcggtcgccggggcggaggcggcgctt 96287 Query: 456 ggcct 460 ||||| Sbjct: 96286 ggcct 96282
>dbj|AK120294.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051A05, full insert sequence Length = 3443 Score = 67.9 bits (34), Expect = 3e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 ||||||||||| |||||||| |||||| || ||||||||||| ||||| ||||||||| Sbjct: 2807 cttgaagccggcgccgaaggtgagcatgaggacgcggtcgccggggcggaggcggcgctt 2748 Query: 456 ggcct 460 ||||| Sbjct: 2747 ggcct 2743
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 3e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 ||||||||||| |||||||| |||||| || ||||||||||| ||||| ||||||||| Sbjct: 17064894 cttgaagccggcgccgaaggtgagcatgaggacgcggtcgccggggcggaggcggcgctt 17064835 Query: 456 ggcct 460 ||||| Sbjct: 17064834 ggcct 17064830 Score = 48.1 bits (24), Expect = 0.025 Identities = 42/48 (87%) Strand = Plus / Plus Query: 367 cggagcgcgcgccagacgacgctgcaggccttgaagccggtgccgaag 414 |||||||||||||||||| ||||| | ||||||||||| ||||||| Sbjct: 3638914 cggagcgcgcgccagacggcgctgttgcacttgaagccggagccgaag 3638961
>ref|NM_194947.1| Oryza sativa (japonica cultivar-group) putative senescence-associated protein 15 (OSJNBa0036D19.6), mRNA Length = 1797 Score = 48.1 bits (24), Expect = 0.025 Identities = 42/48 (87%) Strand = Plus / Minus Query: 367 cggagcgcgcgccagacgacgctgcaggccttgaagccggtgccgaag 414 |||||||||||||||||| ||||| | ||||||||||| ||||||| Sbjct: 1487 cggagcgcgcgccagacggcgctgttgcacttgaagccggagccgaag 1440
>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence Length = 144359 Score = 48.1 bits (24), Expect = 0.025 Identities = 42/48 (87%) Strand = Plus / Plus Query: 367 cggagcgcgcgccagacgacgctgcaggccttgaagccggtgccgaag 414 |||||||||||||||||| ||||| | ||||||||||| ||||||| Sbjct: 71834 cggagcgcgcgccagacggcgctgttgcacttgaagccggagccgaag 71881
>ref|XM_470547.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1788 Score = 44.1 bits (22), Expect = 0.40 Identities = 54/65 (83%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 |||||| |||| ||||||||||||| | | |||||||||| ||||||||||| ||| Sbjct: 1686 cttgaacccggagccgaaggcgagctgccacacgcggtcgccgcggcggacgcggccctt 1627 Query: 456 ggcct 460 ||||| Sbjct: 1626 ggcct 1622
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.40 Identities = 54/65 (83%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 |||||| |||| ||||||||||||| | | |||||||||| ||||||||||| ||| Sbjct: 4253122 cttgaacccggagccgaaggcgagctgccacacgcggtcgccgcggcggacgcggccctt 4253063 Query: 456 ggcct 460 ||||| Sbjct: 4253062 ggcct 4253058
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.40 Identities = 54/65 (83%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 |||||| |||| ||||||||||||| | | |||||||||| ||||||||||| ||| Sbjct: 4253237 cttgaacccggagccgaaggcgagctgccacacgcggtcgccgcggcggacgcggccctt 4253178 Query: 456 ggcct 460 ||||| Sbjct: 4253177 ggcct 4253173
>dbj|AK119228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A08, full insert sequence Length = 1912 Score = 44.1 bits (22), Expect = 0.40 Identities = 54/65 (83%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 |||||| |||| ||||||||||||| | | |||||||||| ||||||||||| ||| Sbjct: 1581 cttgaacccggagccgaaggcgagctgccacacgcggtcgccgcggcggacgcggccctt 1522 Query: 456 ggcct 460 ||||| Sbjct: 1521 ggcct 1517
>dbj|AK100798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121F20, full insert sequence Length = 662 Score = 44.1 bits (22), Expect = 0.40 Identities = 54/65 (83%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 |||||| |||| ||||||||||||| | | |||||||||| ||||||||||| ||| Sbjct: 331 cttgaacccggagccgaaggcgagctgccacacgcggtcgccgcggcggacgcggccctt 272 Query: 456 ggcct 460 ||||| Sbjct: 271 ggcct 267
>dbj|AK099232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M20, full insert sequence Length = 1903 Score = 44.1 bits (22), Expect = 0.40 Identities = 54/65 (83%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 |||||| |||| ||||||||||||| | | |||||||||| ||||||||||| ||| Sbjct: 1572 cttgaacccggagccgaaggcgagctgccacacgcggtcgccgcggcggacgcggccctt 1513 Query: 456 ggcct 460 ||||| Sbjct: 1512 ggcct 1508
>dbj|AK061335.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B10, full insert sequence Length = 1909 Score = 44.1 bits (22), Expect = 0.40 Identities = 54/65 (83%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 |||||| |||| ||||||||||||| | | |||||||||| ||||||||||| ||| Sbjct: 1581 cttgaacccggagccgaaggcgagctgccacacgcggtcgccgcggcggacgcggccctt 1522 Query: 456 ggcct 460 ||||| Sbjct: 1521 ggcct 1517
>dbj|AK060840.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D04, full insert sequence Length = 1907 Score = 44.1 bits (22), Expect = 0.40 Identities = 54/65 (83%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 |||||| |||| ||||||||||||| | | |||||||||| ||||||||||| ||| Sbjct: 1576 cttgaacccggagccgaaggcgagctgccacacgcggtcgccgcggcggacgcggccctt 1517 Query: 456 ggcct 460 ||||| Sbjct: 1516 ggcct 1512
>gb|AY108343.1| Zea mays PCO065510 mRNA sequence Length = 1496 Score = 44.1 bits (22), Expect = 0.40 Identities = 54/65 (83%) Strand = Plus / Plus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 ||||||||| | |||||||||||| ||| |||||||||| ||||||||||| ||| Sbjct: 469 cttgaagcccgacccgaaggcgagctgccagacgcggtcgccgcggcggacgcggccctt 528 Query: 456 ggcct 460 ||||| Sbjct: 529 ggcct 533
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 44.1 bits (22), Expect = 0.40 Identities = 54/65 (83%) Strand = Plus / Minus Query: 396 cttgaagccggtgccgaaggcgagcatntagaggcggtcgccggcgcggacgcggcgctt 455 |||||| |||| ||||||||||||| | | |||||||||| ||||||||||| ||| Sbjct: 81737 cttgaacccggagccgaaggcgagctgccacacgcggtcgccgcggcggacgcggccctt 81678 Query: 456 ggcct 460 ||||| Sbjct: 81677 ggcct 81673
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 123 gatggagcggagtggatcaagg 144 |||||||||||||||||||||| Sbjct: 3028260 gatggagcggagtggatcaagg 3028239
>ref|XM_870653.1| PREDICTED: Bos taurus similar to Rho GTPase activating protein 15 (LOC618322), mRNA Length = 750 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 acgctgcaggccttgaagccg 405 ||||||||||||||||||||| Sbjct: 548 acgctgcaggccttgaagccg 528
>gb|AC125620.5| Rattus norvegicus 4 BAC CH230-9J2 (Children's Hospital Oakland Research Institute) complete sequence Length = 122542 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 20272 ttaggagaagcatctgttcat 20252
>gb|AC027655.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-318M11, complete sequence Length = 104804 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 100455 ttaggagaagcatctgttcat 100435
>ref|NM_024260.3| Mus musculus RIKEN cDNA 1700034M03 gene (1700034M03Rik), mRNA Length = 3543 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 2511 ttaggagaagcatctgttcat 2491
>gb|BC002304.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone MGC:8233 IMAGE:3591600), complete cds Length = 2124 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 1067 ttaggagaagcatctgttcat 1047
>gb|AY254697.1| Mus musculus Bcl2-like protein mRNA, complete cds Length = 3539 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 2515 ttaggagaagcatctgttcat 2495
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 426 gaggcggtcgccggcgcggacgcgg 450 |||||| |||||||||||||||||| Sbjct: 217673 gaggcgctcgccggcgcggacgcgg 217649
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 cgccggcgcggacgcggcgct 454 ||||||||||||||||||||| Sbjct: 846681 cgccggcgcggacgcggcgct 846661
>dbj|AK134533.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330404O15 product:Bcl2-like protein homolog [Mus musculus], full insert sequence Length = 5256 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 4321 ttaggagaagcatctgttcat 4301
>gb|AY075094.1| Streptomyces lividans mutant peptidyl-prolyl cis-trans isomerase genes, complete cds Length = 874 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 426 gaggcggtcgccggcgcggacgcgg 450 |||||| |||||||||||||||||| Sbjct: 157 gaggcgctcgccggcgcggacgcgg 133
>dbj|AK006602.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700034M03 product:RIKEN cDNA 1700034M03 gene, full insert sequence Length = 1398 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 748 ttaggagaagcatctgttcat 728
>dbj|AK042031.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630053E16 product:hypothetical protein, full insert sequence Length = 3678 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 2502 ttaggagaagcatctgttcat 2482
>dbj|AK075898.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310043D14 product:hypothetical protein, full insert sequence Length = 3543 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 2511 ttaggagaagcatctgttcat 2491
>gb|BC036294.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone MGC:30584 IMAGE:3500316), complete cds Length = 3516 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 2462 ttaggagaagcatctgttcat 2442
>gb|BC043092.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone MGC:58011 IMAGE:6405356), complete cds Length = 4854 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 2479 ttaggagaagcatctgttcat 2459
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 433 tcgccggcgcggacgcggcgc 453 ||||||||||||||||||||| Sbjct: 4795940 tcgccggcgcggacgcggcgc 4795920 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gttccaggggttgtcggcgt 352 |||||||||||||||||||| Sbjct: 6953543 gttccaggggttgtcggcgt 6953562 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gttccaggggttgtcggcgt 352 |||||||||||||||||||| Sbjct: 6589047 gttccaggggttgtcggcgt 6589066
>gb|AC066688.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-438J16, complete sequence Length = 176367 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 7973 ttaggagaagcatctgttcat 7953
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 cgccggcgcggacgcggcgct 454 ||||||||||||||||||||| Sbjct: 4665883 cgccggcgcggacgcggcgct 4665903 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 cgccggcgcggacgcggcgc 453 |||||||||||||||||||| Sbjct: 4827581 cgccggcgcggacgcggcgc 4827600
>ref|XM_231428.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700034M03 gene (predicted) (LOC312083), mRNA Length = 3541 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 2511 ttaggagaagcatctgttcat 2491
>dbj|AK217072.1| Mus musculus cDNA, clone:Y2G0140I16, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000050225, based on BLAT search Length = 413 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 319 ttaggagaagcatctgttcat 299
>dbj|AK129458.1| Mus musculus mRNA for mKIAA1861 protein Length = 3504 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 2472 ttaggagaagcatctgttcat 2452
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 cgccggcgcggacgcggcgct 454 ||||||||||||||||||||| Sbjct: 877324 cgccggcgcggacgcggcgct 877304
>gb|BC091288.1| Rattus norvegicus similar to RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone IMAGE:7304986), partial cds Length = 2133 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ttaggagaagcatctgttcat 102 ||||||||||||||||||||| Sbjct: 1073 ttaggagaagcatctgttcat 1053
>emb|AL670181.6| Mouse DNA sequence from clone RP23-216P24 on chromosome X, complete sequence Length = 166660 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 255 gggttggggctggggttggtagttg 279 ||||||||||||||| ||||||||| Sbjct: 101051 gggttggggctgggggtggtagttg 101027
>ref|XM_481781.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2041 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tcgccggcgcggacgcggcg 452 |||||||||||||||||||| Sbjct: 71 tcgccggcgcggacgcggcg 90
>ref|XM_507198.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1790_D02.36 mRNA Length = 2057 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tcgccggcgcggacgcggcg 452 |||||||||||||||||||| Sbjct: 110 tcgccggcgcggacgcggcg 129
>gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, complete sequence Length = 262048 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 cagctgcttcttctgctccgcctc 233 |||||||| ||||||||||||||| Sbjct: 37946 cagctgctccttctgctccgcctc 37969
>ref|XM_001003992.1| PREDICTED: Mus musculus similar to cingulin-like 1 isoform 1 (LOC677485), mRNA Length = 6465 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 |||||||| ||||||||||||||| Sbjct: 2890 cagctgctccttctgctccgcctc 2867
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 cgccggcgcggacgcggcgc 453 |||||||||||||||||||| Sbjct: 4215340 cgccggcgcggacgcggcgc 4215359
>gb|AC107662.9| Mus musculus chromosome 9, clone RP23-99B22, complete sequence Length = 233476 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 cagctgcttcttctgctccgcctc 233 |||||||| ||||||||||||||| Sbjct: 124439 cagctgctccttctgctccgcctc 124462
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 gaggcggtcgccggcgcgga 445 |||||||||||||||||||| Sbjct: 3028592 gaggcggtcgccggcgcgga 3028573
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gaagccggtgccgaaggcga 418 |||||||||||||||||||| Sbjct: 2228854 gaagccggtgccgaaggcga 2228873
>emb|X60784.1|CGTUBB1 Cricetulus griseus (chinese hamster) mRNA for beta tubulin (clone B16T) Length = 1609 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gaagccagcacaaatttatt 166 |||||||||||||||||||| Sbjct: 36 gaagccagcacaaatttatt 55
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ggccttgaagccggtgccga 412 |||||||||||||||||||| Sbjct: 50117 ggccttgaagccggtgccga 50098
>gb|AC092954.4| Homo sapiens 3 BAC RP11-368I23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166452 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 gggctggggttggtagttgtgcct 284 ||||||||| |||||||||||||| Sbjct: 129849 gggctggggatggtagttgtgcct 129826
>gb|AC010688.6| Drosophila melanogaster 3L BAC RP98-11G5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 201313 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 cagctgcttcttctgctccgcctc 233 ||||||||||||||||| |||||| Sbjct: 201281 cagctgcttcttctgctgcgcctc 201304
>gb|AE005806.1| Caulobacter crescentus CB15 section 132 of 359 of the complete genome Length = 10111 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 426 gaggcggtcgccggcgcggacgcg 449 ||||||||||||||||||| |||| Sbjct: 6515 gaggcggtcgccggcgcggtcgcg 6538
>gb|AE012002.1| Xanthomonas axonopodis pv. citri str. 306, section 380 of 469 of the complete genome Length = 11005 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 cgccggcgcggacgcggcgc 453 |||||||||||||||||||| Sbjct: 5227 cgccggcgcggacgcggcgc 5246
>ref|NM_176339.1| Drosophila melanogaster CG9674-RD, transcript variant D (CG9674), mRNA Length = 7298 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 ||||||||||||||||| |||||| Sbjct: 6034 cagctgcttcttctgctgcgcctc 6011
>ref|NM_168687.1| Drosophila melanogaster CG9674-RC, transcript variant C (CG9674), mRNA Length = 3507 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 ||||||||||||||||| |||||| Sbjct: 2243 cagctgcttcttctgctgcgcctc 2220
>ref|NM_168686.1| Drosophila melanogaster CG9674-RB, transcript variant B (CG9674), mRNA Length = 3693 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 ||||||||||||||||| |||||| Sbjct: 2429 cagctgcttcttctgctgcgcctc 2406
>ref|NM_140665.1| Drosophila melanogaster CG9674-RA, transcript variant A (CG9674), mRNA Length = 7191 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 ||||||||||||||||| |||||| Sbjct: 5927 cagctgcttcttctgctgcgcctc 5904
>gb|AY094734.1| Drosophila melanogaster GH26789 full insert cDNA Length = 6745 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 ||||||||||||||||| |||||| Sbjct: 5889 cagctgcttcttctgctgcgcctc 5866
>gb|AC010751.5| Drosophila melanogaster 3L BAC RP98-9A23 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181437 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 ||||||||||||||||| |||||| Sbjct: 128448 cagctgcttcttctgctgcgcctc 128425
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 tgaagccggtgccgaaggcg 417 |||||||||||||||||||| Sbjct: 1827341 tgaagccggtgccgaaggcg 1827322
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tcgccggcgcggacgcggcg 452 |||||||||||||||||||| Sbjct: 15469422 tcgccggcgcggacgcggcg 15469441
>gb|BT003224.1| Drosophila melanogaster LP11387 full insert cDNA Length = 3073 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 ||||||||||||||||| |||||| Sbjct: 2225 cagctgcttcttctgctgcgcctc 2202
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster, complete sequence Length = 123580 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 ggtcgccggcgcggacgcggcgct 454 |||||||||||||| ||||||||| Sbjct: 27752 ggtcgccggcgcggtcgcggcgct 27729
>dbj|AB186125.1| Mus musculus JACOP mRNA for junction-associated coiled-coil protein, complete cds Length = 4492 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 |||||||| ||||||||||||||| Sbjct: 3333 cagctgctccttctgctccgcctc 3310
>dbj|AK173252.1| Mus musculus mRNA for mKIAA1749 protein Length = 5522 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 |||||||| ||||||||||||||| Sbjct: 1661 cagctgctccttctgctccgcctc 1638
>dbj|AP004645.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_B10 Length = 148508 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tcgccggcgcggacgcggcg 452 |||||||||||||||||||| Sbjct: 17180 tcgccggcgcggacgcggcg 17199
>dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1790_D02 Length = 162928 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tcgccggcgcggacgcggcg 452 |||||||||||||||||||| Sbjct: 154998 tcgccggcgcggacgcggcg 155017
>ref|XM_563658.1| Anopheles gambiae str. PEST ENSANGP00000026985 (ENSANGG00000023805), partial mRNA Length = 1020 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ggtgggcaccggcaatgcca 310 |||||||||||||||||||| Sbjct: 850 ggtgggcaccggcaatgcca 831
>dbj|AK099236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106P03, full insert sequence Length = 2040 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tcgccggcgcggacgcggcg 452 |||||||||||||||||||| Sbjct: 70 tcgccggcgcggacgcggcg 89
>dbj|AK068357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145A03, full insert sequence Length = 2057 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tcgccggcgcggacgcggcg 452 |||||||||||||||||||| Sbjct: 110 tcgccggcgcggacgcggcg 129
>gb|BC039211.1| Mus musculus cingulin-like 1, mRNA (cDNA clone IMAGE:4188141), partial cds Length = 4275 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 |||||||| ||||||||||||||| Sbjct: 379 cagctgctccttctgctccgcctc 356
>gb|AC006933.3|AC006933 Drosophila melanogaster, chromosome 3L, region 73B7-73D6, BAC clone BACR48E21, complete sequence Length = 186002 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 ||||||||||||||||| |||||| Sbjct: 110940 cagctgcttcttctgctgcgcctc 110917
>gb|AE003526.4| Drosophila melanogaster chromosome 3L, section 59 of 83 of the complete sequence Length = 281100 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 cagctgcttcttctgctccgcctc 233 ||||||||||||||||| |||||| Sbjct: 205154 cagctgcttcttctgctgcgcctc 205177
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 gaagccggtgccgaaggcgagcat 422 |||| ||||||||||||||||||| Sbjct: 1412258 gaaggcggtgccgaaggcgagcat 1412281
>emb|AM040443.1| Frankia sp. BMG5.11 16S rRNA gene (partial), ITS1 and 23S rRNA gene (partial), strain BMG5.11, isolate J7 Length = 501 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 gggttggggctggggttggt 274 |||||||||||||||||||| Sbjct: 205 gggttggggctggggttggt 224
>emb|AM040442.1| Frankia sp. BMG5.11 16S rRNA gene (partial), ITS1 and 23S rRNA gene (partial), strain BMG5.11, isolate J1 Length = 507 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 gggttggggctggggttggt 274 |||||||||||||||||||| Sbjct: 211 gggttggggctggggttggt 230
>ref|NM_026599.4| Mus musculus cingulin-like 1 (Cgnl1), transcript variant 1, mRNA Length = 6754 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cagctgcttcttctgctccgcctc 233 |||||||| ||||||||||||||| Sbjct: 2893 cagctgctccttctgctccgcctc 2870 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,859,801 Number of Sequences: 3902068 Number of extensions: 2859801 Number of successful extensions: 58294 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56968 Number of HSP's gapped (non-prelim): 1317 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
