ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1h20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC018712.5| Homo sapiens BAC clone RP11-343H10 from 2, comple... 42 1.1
2emb|CT030724.7| Mouse DNA sequence from clone RP24-63K13 on chro... 42 1.1
3gb|AC160635.2| Mus musculus BAC clone RP23-396N20 from chromosom... 42 1.1

>gb|AC018712.5| Homo sapiens BAC clone RP11-343H10 from 2, complete sequence
          Length = 156833

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 221    agcaacctgctctgctcttat 241
              |||||||||||||||||||||
Sbjct: 128760 agcaacctgctctgctcttat 128780



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>emb|CT030724.7| Mouse DNA sequence from clone RP24-63K13 on chromosome 9, complete
             sequence
          Length = 155546

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 289   tggtctgaaatatgttctgaa 309
             |||||||||||||||||||||
Sbjct: 81545 tggtctgaaatatgttctgaa 81525



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>gb|AC160635.2| Mus musculus BAC clone RP23-396N20 from chromosome 9, complete sequence
          Length = 207088

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 289   tggtctgaaatatgttctgaa 309
             |||||||||||||||||||||
Sbjct: 17585 tggtctgaaatatgttctgaa 17565


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,063,400
Number of Sequences: 3902068
Number of extensions: 2063400
Number of successful extensions: 33578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33574
Number of HSP's gapped (non-prelim): 4
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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