ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags28d07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 188 bits (95), Expect = 6e-45 Identities = 140/155 (90%) Strand = Plus / Plus Query: 108 aacttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaag 167 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 22901790 aacttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaag 22901849 Query: 168 atagttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggcctt 227 |||| || ||||| |||||| | |||||||||||||||||||||||||| | ||||| Sbjct: 22901850 ataggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagcctt 22901909 Query: 228 ctggtcatcctttttgaagtcaggcaggttcttgg 262 |||||||||||| |||||||| ||||| ||||||| Sbjct: 22901910 ctggtcatccttcttgaagtcgggcagattcttgg 22901944
>gb|AY846820.1| Triticum aestivum ribosomal protein L6 mRNA, complete cds Length = 686 Score = 188 bits (95), Expect = 6e-45 Identities = 140/155 (90%) Strand = Plus / Minus Query: 108 aacttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaag 167 |||||| |||||||||||||| |||||||| || |||||||| ||||||||||||||||| Sbjct: 682 aacttaaaaggtcatctcatgcggcttgtcgccatccctgagggagaaccgggcaccaag 623 Query: 168 atagttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggcctt 227 ||| || |||||||| ||||| |||||||||||||||||||||||||| |||||| |||| Sbjct: 622 ataatttttaaggtctgggacggcatcgatagccttgatcaactcagcgtcaatgacctt 563 Query: 228 ctggtcatcctttttgaagtcaggcaggttcttgg 262 |||||||||||| |||||||| |||| ||||||| Sbjct: 562 ctggtcatccttcttgaagtctggcaaattcttgg 528
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 188 bits (95), Expect = 6e-45 Identities = 140/155 (90%) Strand = Plus / Plus Query: 108 aacttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaag 167 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 21592 aacttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaag 21651 Query: 168 atagttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggcctt 227 |||| || ||||| |||||| | |||||||||||||||||||||||||| | ||||| Sbjct: 21652 ataggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagcctt 21711 Query: 228 ctggtcatcctttttgaagtcaggcaggttcttgg 262 |||||||||||| |||||||| ||||| ||||||| Sbjct: 21712 ctggtcatccttcttgaagtcgggcagattcttgg 21746
>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0006O15 Length = 139723 Score = 188 bits (95), Expect = 6e-45 Identities = 140/155 (90%) Strand = Plus / Plus Query: 108 aacttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaag 167 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 135128 aacttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaag 135187 Query: 168 atagttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggcctt 227 |||| || ||||| |||||| | |||||||||||||||||||||||||| | ||||| Sbjct: 135188 ataggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagcctt 135247 Query: 228 ctggtcatcctttttgaagtcaggcaggttcttgg 262 |||||||||||| |||||||| ||||| ||||||| Sbjct: 135248 ctggtcatccttcttgaagtcgggcagattcttgg 135282
>dbj|AK072777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139B06, full insert sequence Length = 1030 Score = 188 bits (95), Expect = 6e-45 Identities = 140/155 (90%) Strand = Plus / Minus Query: 108 aacttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaag 167 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 733 aacttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaag 674 Query: 168 atagttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggcctt 227 |||| || ||||| |||||| | |||||||||||||||||||||||||| | ||||| Sbjct: 673 ataggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagcctt 614 Query: 228 ctggtcatcctttttgaagtcaggcaggttcttgg 262 |||||||||||| |||||||| ||||| ||||||| Sbjct: 613 ctggtcatccttcttgaagtcgggcagattcttgg 579
>ref|XM_466485.1| Oryza sativa (japonica cultivar-group), mRNA Length = 660 Score = 182 bits (92), Expect = 4e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 111 ttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagata 170 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 660 ttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaagata 601 Query: 171 gttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctg 230 | || ||||| |||||| | |||||||||||||||||||||||||| | |||||||| Sbjct: 600 ggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagccttctg 541 Query: 231 gtcatcctttttgaagtcaggcaggttcttgg 262 ||||||||| |||||||| ||||| ||||||| Sbjct: 540 gtcatccttcttgaagtcgggcagattcttgg 509
>gb|AY103559.1| Zea mays PCO112591 mRNA sequence Length = 1361 Score = 133 bits (67), Expect = 3e-28 Identities = 118/135 (87%) Strand = Plus / Minus Query: 120 catctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagatagttcttaag 179 ||||||||||||||||||||| |||||||||||||||||||| ||||||||| | || || Sbjct: 1055 catctcatggggcttgtcaccatccctgagagagaaccgggcgccaagataggttttcag 996 Query: 180 gtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctggtcatcctt 239 || ||||||| |||||||||||||||| ||| ||| | ||||||||||||||||| Sbjct: 995 ctccaggacagcctcgatagccttgatcagagcagaatccacagccttctggtcatcctt 936 Query: 240 tttgaagtcaggcag 254 |||||||||||||| Sbjct: 935 cttgaagtcaggcag 921
>ref|XM_472843.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 669 Score = 101 bits (51), Expect = 1e-18 Identities = 120/143 (83%) Strand = Plus / Minus Query: 120 catctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagatagttcttaag 179 |||||| ||||||||||| |||||||||||||| ||||| |||||||| || | || || Sbjct: 660 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 601 Query: 180 gtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctggtcatcctt 239 || |||||||| || ||||| ||||||||||| ||||| | | |||||||| ||||| Sbjct: 600 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 541 Query: 240 tttgaagtcaggcaggttcttgg 262 |||||| || ||||||||||||| Sbjct: 540 tttgaactccggcaggttcttgg 518
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 101 bits (51), Expect = 1e-18 Identities = 120/143 (83%) Strand = Plus / Plus Query: 120 catctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagatagttcttaag 179 |||||| ||||||||||| |||||||||||||| ||||| |||||||| || | || || Sbjct: 79067 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 79126 Query: 180 gtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctggtcatcctt 239 || |||||||| || ||||| ||||||||||| ||||| | | |||||||| ||||| Sbjct: 79127 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 79186 Query: 240 tttgaagtcaggcaggttcttgg 262 |||||| || ||||||||||||| Sbjct: 79187 tttgaactccggcaggttcttgg 79209
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 101 bits (51), Expect = 1e-18 Identities = 120/143 (83%) Strand = Plus / Plus Query: 120 catctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagatagttcttaag 179 |||||| ||||||||||| |||||||||||||| ||||| |||||||| || | || || Sbjct: 23636386 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 23636445 Query: 180 gtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctggtcatcctt 239 || |||||||| || ||||| ||||||||||| ||||| | | |||||||| ||||| Sbjct: 23636446 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 23636505 Query: 240 tttgaagtcaggcaggttcttgg 262 |||||| || ||||||||||||| Sbjct: 23636506 tttgaactccggcaggttcttgg 23636528
>dbj|AK067896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123D20, full insert sequence Length = 933 Score = 101 bits (51), Expect = 1e-18 Identities = 120/143 (83%) Strand = Plus / Minus Query: 120 catctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagatagttcttaag 179 |||||| ||||||||||| |||||||||||||| ||||| |||||||| || | || || Sbjct: 714 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 655 Query: 180 gtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctggtcatcctt 239 || |||||||| || ||||| ||||||||||| ||||| | | |||||||| ||||| Sbjct: 654 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 595 Query: 240 tttgaagtcaggcaggttcttgg 262 |||||| || ||||||||||||| Sbjct: 594 tttgaactccggcaggttcttgg 572
>emb|BX649433.4| Zebrafish DNA sequence from clone DKEY-215P16 in linkage group 7, complete sequence Length = 77241 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ccaagatagttcttaaggtca 183 ||||||||||||||||||||| Sbjct: 51238 ccaagatagttcttaaggtca 51258
>emb|AL928677.6| Zebrafish DNA sequence from clone BUSM1-70B1 in linkage group 7 Contains a novel gene similar to mouse and rodent CHRNA7 (cholinergic receptor, nicotinic, alpha polypeptide 7), a novel gene and two CpG islands, complete sequence Length = 144076 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 ccaagatagttcttaaggtca 183 ||||||||||||||||||||| Sbjct: 62863 ccaagatagttcttaaggtca 62843
>ref|XM_716459.1| Candida albicans SC5314 putative 26S proteasome regulatory particle subunit Rpn3p (CaO19_3054), mRNA Length = 1446 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gtcatcctttttgaagtcag 250 |||||||||||||||||||| Sbjct: 1020 gtcatcctttttgaagtcag 1001
>ref|XM_716188.1| Candida albicans SC5314 putative 26S proteasome regulatory particle subunit Rpn3p (CaO19_10572), mRNA Length = 1446 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gtcatcctttttgaagtcag 250 |||||||||||||||||||| Sbjct: 1020 gtcatcctttttgaagtcag 1001
>ref|XM_752221.1| Ustilago maydis 521 hypothetical protein (UM01167.1) partial mRNA Length = 3945 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 agaaggtcatctcatggggc 132 |||||||||||||||||||| Sbjct: 2466 agaaggtcatctcatggggc 2485
>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence Length = 214405 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 atggccttctggtcatcctt 239 |||||||||||||||||||| Sbjct: 125642 atggccttctggtcatcctt 125623
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cttgatcaactcagcatcaa 220 |||||||||||||||||||| Sbjct: 3482500 cttgatcaactcagcatcaa 3482519
>dbj|AB226127.1| Aspergillus oryzae cDNA, contig sequence: AoEST2984 Length = 929 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 tcatctcatggggcttgtcaccgt 142 ||||||| |||||||||||||||| Sbjct: 658 tcatctcgtggggcttgtcaccgt 635
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 tcatctcatggggcttgtcaccgt 142 ||||||| |||||||||||||||| Sbjct: 769646 tcatctcgtggggcttgtcaccgt 769669
>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence Length = 189979 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ggtcatctcatggggcttgt 136 |||||||||||||||||||| Sbjct: 31984 ggtcatctcatggggcttgt 31965
>gb|AC078927.20| Homo sapiens 12 BAC RP11-745O10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125777 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tcatctcatggggcttgtca 138 |||||||||||||||||||| Sbjct: 108030 tcatctcatggggcttgtca 108049 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,040,701 Number of Sequences: 3902068 Number of extensions: 2040701 Number of successful extensions: 44845 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44772 Number of HSP's gapped (non-prelim): 64 length of query: 262 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 240 effective length of database: 17,147,199,772 effective search space: 4115327945280 effective search space used: 4115327945280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
