Clone Information

BLAST Search Result

Clone Name	rbags27o07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483192.1\| Oryza sativa (japonica cultivar-group), mRNA	289	5e-75
2	dbj\|AK101328.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	289	5e-75
3	gb\|AY110296.1\| Zea mays CL11152_1 mRNA sequence	220	4e-54
4	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	163	8e-37
5	dbj\|AP003892.3\| Oryza sativa (japonica cultivar-group) genomic D...	163	8e-37
6	gb\|AC115634.2\| Oryza sativa (japonica cultivar-group) chromosome...	113	6e-22
7	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	113	6e-22
8	gb\|DQ207724.1\| Zea mays cultivar B73 IDP525 marker	50	0.008
9	gb\|AC116588.3\| Mus musculus BAC clone RP23-448E6 from 9, complet...	44	0.48
10	gb\|AY312423.1\| Otus elegans clone Oe050 microsatellite sequence	42	1.9
11	emb\|AL135785.10\| Human DNA sequence from clone RP11-113O24 on ch...	42	1.9
12	emb\|CR956647.7\| Pig DNA sequence from clone CH242-38B5 on chromo...	40	7.6
13	emb\|AJ131112.2\|SSC131112 Sus scrofa MHC class I SLA genes, haplo...	40	7.6
14	emb\|CR974460.5\| Pig DNA sequence from clone PigE-150I6 on chromo...	40	7.6
15	emb\|CT009560.9\| Pig DNA sequence from clone CH242-4C12 on chromo...	40	7.6
16	gb\|AC127228.3\| Mus musculus BAC clone RP24-539P4 from chromosome...	40	7.6
17	emb\|CR956396.6\| Pig DNA sequence from clone CH242-205N12 on chro...	40	7.6
18	emb\|CR956410.6\| Pig DNA sequence from clone PigE-123H20 on chrom...	40	7.6
19	gb\|AC119851.9\| Mus musculus chromosome 7, clone RP23-106N20, com...	40	7.6
20	emb\|AL590809.5\| Human DNA sequence from clone RP11-733H21 on chr...	40	7.6
21	emb\|AL160395.24\| Human DNA sequence from clone RP11-474D23 on ch...	40	7.6
22	emb\|AJ427478.2\|SSC427478 Sus scrofa ASIP gene for agouti signall...	40	7.6
23	emb\|CR853303.6\| Pig DNA sequence from clone PigE-173F2, complete...	40	7.6
24	gb\|AC091723.3\| Sus scrofa clone RP44-349L7, complete sequence	40	7.6
25	gb\|AF067624.1\| Caenorhabditis elegans cosmid M01B12, complete se...	40	7.6
26	gb\|DP000062.1\| Sus scrofa target 117 genomic scaffold	40	7.6
27	dbj\|AB158488.1\| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, ...	40	7.6
28	gb\|AC114796.3\| Homo sapiens BAC clone RP11-700B17 from 4, comple...	40	7.6
29	gb\|AC159001.2\| Mus musculus BAC clone RP24-221A23 from chromosom...	40	7.6
30	emb\|BX296548.20\| Pig DNA sequence from clone PigE-193I9, complet...	40	7.6
31	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.6
32	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.6
33	dbj\|AB206998.1\| Sus scrofa ASIP and AHCY genes for agouti signal...	40	7.6
34	gb\|AC092875.2\| Sus scrofa clone RP44-476K1, complete sequence	40	7.6
35	gb\|AC092534.4\| Homo sapiens BAC clone RP13-629D7 from 2, complet...	40	7.6
36	gb\|DQ020488.1\| Sus scrofa clone BAC KNP_798F4, complete sequence	40	7.6
37	dbj\|AP005567.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.6
38	dbj\|AP005314.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.6
39	gb\|AC104483.2\| Sus scrofa clone RP44-427G13, complete sequence	40	7.6
40	gb\|AC157575.1\| Mus musculus BAC clone RP23-16D16 from 9, complet...	40	7.6
41	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.6
42	emb\|AL731739.4\|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa...	40	7.6
43	emb\|CR956648.9\| Pig DNA sequence from clone CH242-155F23 on chro...	40	7.6
44	emb\|CR974587.14\| Pig DNA sequence from clone CH242-288P9 on chro...	40	7.6

>ref|XM_483192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2237

 Score =  289 bits (146), Expect = 5e-75
 Identities = 345/410 (84%), Gaps = 1/410 (0%)
 Strand = Plus / Minus

                                                                        
Query: 108  gccatggatactt-aagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 166
            |||||||| |||| ||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 2013 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 1954

                                                                        
Query: 167  agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 226
            |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 1953 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 1894

                                                                        
Query: 227  atcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcgga 286
            ||||  || ||||||||||| ||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 1893 atcagttcaaggacctccattgcagctttgtagttcgccacactcctttggaactgtgga 1834

                                                                        
Query: 287  ttggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgata 346
            |||| ||| |||| ||| || ||    || || |  |||| |||||||||||||||||| 
Sbjct: 1833 ttggacttacgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgatg 1774

                                                                        
Query: 347  attttgaagagtgtttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagc 406
            || || |||||||||||||| ||||| | |||||||| |||||||||||| || || |||
Sbjct: 1773 atcttaaagagtgtttgaagagcagaagttgcctctgtaggtgttgcttgtgagcgaagc 1714

                                                                        
Query: 407  atttcaatagccttctggaggcgcgaacagagggctgccactggctcttctattctttgc 466
            |||||||| |||||||| ||||| | |||||||||||||||||| ||||| || || || 
Sbjct: 1713 atttcaatggccttctgaaggcgtgcacagagggctgccactggttcttcgatcctctgg 1654

                                                              
Query: 467  agctcatcgctctttaaattagcagcatgatcgtcagggtcaggttcaga 516
            ||||||  | | ||| |||||||||||||||| ||||| ||||| |||||
Sbjct: 1653 agctcactgatgtttgaattagcagcatgatcatcaggatcaggctcaga 1604

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>dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034G12, full
            insert sequence
          Length = 2575

 Score =  289 bits (146), Expect = 5e-75
 Identities = 345/410 (84%), Gaps = 1/410 (0%)
 Strand = Plus / Minus

                                                                        
Query: 108  gccatggatactt-aagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 166
            |||||||| |||| ||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 2350 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 2291

                                                                        
Query: 167  agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 226
            |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 2290 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 2231

                                                                        
Query: 227  atcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcgga 286
            ||||  || ||||||||||| ||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 2230 atcagttcaaggacctccattgcagctttgtagttcgccacactcctttggaactgtgga 2171

                                                                        
Query: 287  ttggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgata 346
            |||| ||| |||| ||| || ||    || || |  |||| |||||||||||||||||| 
Sbjct: 2170 ttggacttacgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgatg 2111

                                                                        
Query: 347  attttgaagagtgtttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagc 406
            || || |||||||||||||| ||||| | |||||||| |||||||||||| || || |||
Sbjct: 2110 atcttaaagagtgtttgaagagcagaagttgcctctgtaggtgttgcttgtgagcgaagc 2051

                                                                        
Query: 407  atttcaatagccttctggaggcgcgaacagagggctgccactggctcttctattctttgc 466
            |||||||| |||||||| ||||| | |||||||||||||||||| ||||| || || || 
Sbjct: 2050 atttcaatggccttctgaaggcgtgcacagagggctgccactggttcttcgatcctctgg 1991

                                                              
Query: 467  agctcatcgctctttaaattagcagcatgatcgtcagggtcaggttcaga 516
            ||||||  | | ||| |||||||||||||||| ||||| ||||| |||||
Sbjct: 1990 agctcactgatgtttgaattagcagcatgatcatcaggatcaggctcaga 1941

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>gb|AY110296.1| Zea mays CL11152_1 mRNA sequence
          Length = 1213

 Score =  220 bits (111), Expect = 4e-54
 Identities = 324/395 (82%)
 Strand = Plus / Minus

                                                                       
Query: 121 aagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccaggtaggt 180
           |||||| ||||| || ||||| ||||| |||||||| ||||| ||||  |||||||| ||
Sbjct: 880 aagggatgactttgccagccatagcaatccaggatcattccttttcaataccaggtaagt 821

                                                                       
Query: 181 ctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatcaactcgaggac 240
           ||| |||||||||| |||||| ||||  |||||||| ||||| |||||||| || || ||
Sbjct: 820 ctcagcacgcccaacctcatctgagattacatcctcacagaaaccaatcaattcaagaac 761

                                                                       
Query: 241 ctccatcgcagctttgtaattcaccacgctcctttggaaatgcggattggtcttgcgcaa 300
           |||||| |||||||| || ||  | ||||||||||||||||| ||||||| ||| |||||
Sbjct: 760 ctccattgcagctttatagtttgctacgctcctttggaaatgtggattggacttacgcaa 701

                                                                       
Query: 301 tcttctataacgaatgtcgttcgggttctctatcacattcttgataattttgaagagtgt 360
           |||  ||||   |||||| || || | |||||| |||||||||||||| || ||||| ||
Sbjct: 700 tctcttatacttaatgtcatttggatgctctataacattcttgataatcttaaagagagt 641

                                                                       
Query: 361 ttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagcatttcaatagcctt 420
           |||||  |||||  ||||||||  ||||||||||||| |||| ||||| | ||| | |||
Sbjct: 640 ttgaatagcagactctgcctctacaggtgttgcttgcaaccgaagcatcttaatggactt 581

                                                                       
Query: 421 ctggaggcgcgaacagagggctgccactggctcttctattctttgcagctcatcgctctt 480
           |||||| || ||||||||||||  |||||| ||||| |  ||||||||||||| | | ||
Sbjct: 580 ctggagtcgtgaacagagggctctcactggttcttcaaccctttgcagctcattgatgtt 521

                                              
Query: 481 taaattagcagcatgatcgtcagggtcaggttcag 515
           | | | | || ||||||||||||| ||||||||||
Sbjct: 520 tgagtcaccaacatgatcgtcaggatcaggttcag 486

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  163 bits (82), Expect = 8e-37
 Identities = 166/194 (85%)
 Strand = Plus / Minus

                                                                            
Query: 323      gggttctctatcacattcttgataattttgaagagtgtttgaagtgcagaggctgcctct 382
                |||| |||||||||||||||||| || || |||||||||||||| ||||| | |||||||
Sbjct: 24723344 gggtgctctatcacattcttgatgatcttaaagagtgtttgaagagcagaagttgcctct 24723285

                                                                            
Query: 383      gaaggtgttgcttgcgaccggagcatttcaatagccttctggaggcgcgaacagagggct 442
                | |||||||||||| || || ||||||||||| |||||||| ||||| | ||||||||||
Sbjct: 24723284 gtaggtgttgcttgtgagcgaagcatttcaatggccttctgaaggcgtgcacagagggct 24723225

                                                                            
Query: 443      gccactggctcttctattctttgcagctcatcgctctttaaattagcagcatgatcgtca 502
                |||||||| ||||| || || || ||||||  | | ||| |||||||||||||||| |||
Sbjct: 24723224 gccactggttcttcgatcctctggagctcactgatgtttgaattagcagcatgatcatca 24723165

                              
Query: 503      gggtcaggttcaga 516
                || ||||| |||||
Sbjct: 24723164 ggatcaggctcaga 24723151



 Score =  133 bits (67), Expect = 7e-28
 Identities = 128/147 (87%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                            
Query: 108      gccatggatactt-aagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 166
                |||||||| |||| ||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 24723752 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 24723693

                                                                            
Query: 167      agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 226
                |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 24723692 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 24723633

                                           
Query: 227      atcaactcgaggacctccatcgcagct 253
                ||||  || ||||||||||| ||||||
Sbjct: 24723632 atcagttcaaggacctccattgcagct 24723606

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>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1345_D02
          Length = 159613

 Score =  163 bits (82), Expect = 8e-37
 Identities = 166/194 (85%)
 Strand = Plus / Minus

                                                                         
Query: 323   gggttctctatcacattcttgataattttgaagagtgtttgaagtgcagaggctgcctct 382
             |||| |||||||||||||||||| || || |||||||||||||| ||||| | |||||||
Sbjct: 24145 gggtgctctatcacattcttgatgatcttaaagagtgtttgaagagcagaagttgcctct 24086

                                                                         
Query: 383   gaaggtgttgcttgcgaccggagcatttcaatagccttctggaggcgcgaacagagggct 442
             | |||||||||||| || || ||||||||||| |||||||| ||||| | ||||||||||
Sbjct: 24085 gtaggtgttgcttgtgagcgaagcatttcaatggccttctgaaggcgtgcacagagggct 24026

                                                                         
Query: 443   gccactggctcttctattctttgcagctcatcgctctttaaattagcagcatgatcgtca 502
             |||||||| ||||| || || || ||||||  | | ||| |||||||||||||||| |||
Sbjct: 24025 gccactggttcttcgatcctctggagctcactgatgtttgaattagcagcatgatcatca 23966

                           
Query: 503   gggtcaggttcaga 516
             || ||||| |||||
Sbjct: 23965 ggatcaggctcaga 23952



 Score =  133 bits (67), Expect = 7e-28
 Identities = 128/147 (87%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                         
Query: 108   gccatggatactt-aagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 166
             |||||||| |||| ||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 24553 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 24494

                                                                         
Query: 167   agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 226
             |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 24493 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 24434

                                        
Query: 227   atcaactcgaggacctccatcgcagct 253
             ||||  || ||||||||||| ||||||
Sbjct: 24433 atcagttcaaggacctccattgcagct 24407

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>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06,
             complete sequence
          Length = 71193

 Score =  113 bits (57), Expect = 6e-22
 Identities = 111/129 (86%)
 Strand = Plus / Minus

                                                                         
Query: 125   gaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccaggtaggtctcc 184
             |||||||| ||||||||| |||| | |||||||||||| ||||  |||| ||| ||||| 
Sbjct: 27029 gaggactttgcaagccacggcaagctaggatcgttccttttcaataccaagtaagtctct 26970

                                                                         
Query: 185   gcacgcccaatctcatccgagacgacatcctcgcagaagccaatcaactcgaggacctcc 244
             ||||| ||||||||||||||||| |||||||| ||||| |||||||| || |||| ||||
Sbjct: 26969 gcacgaccaatctcatccgagacaacatcctcacagaaaccaatcaattcaaggaactcc 26910

                      
Query: 245   atcgcagct 253
             || ||||||
Sbjct: 26909 attgcagct 26901



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 87/102 (85%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                         
Query: 323   gggttctctatcacattcttgataat-tttgaagagtgtttgaagtgcagaggctgcctc 381
             |||| |||||||||||||||||| || ||  |||||||||||||  ||||| | ||||||
Sbjct: 24688 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaatagcagaagttgcctc 24629

                                                       
Query: 382   tgaaggtgttgcttgcgaccggagcatttcaatagccttctg 423
             || ||||||| |||| || || ||||||||||| ||||||||
Sbjct: 24628 tgcaggtgtt-cttgtgagcgaagcatttcaatggccttctg 24588

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  113 bits (57), Expect = 6e-22
 Identities = 111/129 (86%)
 Strand = Plus / Minus

                                                                            
Query: 125      gaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccaggtaggtctcc 184
                |||||||| ||||||||| |||| | |||||||||||| ||||  |||| ||| ||||| 
Sbjct: 10810097 gaggactttgcaagccacggcaagctaggatcgttccttttcaataccaagtaagtctct 10810038

                                                                            
Query: 185      gcacgcccaatctcatccgagacgacatcctcgcagaagccaatcaactcgaggacctcc 244
                ||||| ||||||||||||||||| |||||||| ||||| |||||||| || |||| ||||
Sbjct: 10810037 gcacgaccaatctcatccgagacaacatcctcacagaaaccaatcaattcaaggaactcc 10809978

                         
Query: 245      atcgcagct 253
                || ||||||
Sbjct: 10809977 attgcagct 10809969



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 87/102 (85%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                            
Query: 323      gggttctctatcacattcttgataat-tttgaagagtgtttgaagtgcagaggctgcctc 381
                |||| |||||||||||||||||| || ||  |||||||||||||  ||||| | ||||||
Sbjct: 10807756 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaatagcagaagttgcctc 10807697

                                                          
Query: 382      tgaaggtgttgcttgcgaccggagcatttcaatagccttctg 423
                || ||||||| |||| || || ||||||||||| ||||||||
Sbjct: 10807696 tgcaggtgtt-cttgtgagcgaagcatttcaatggccttctg 10807656

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>gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker
          Length = 286

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 121 aagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccaggta 177
           |||||||||||| || ||||| ||||| |||||||| ||||| ||||  ||||||||
Sbjct: 226 aagggaggactttgccagccatagcaatccaggatcattccttttcaataccaggta 282

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>gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complete sequence
          Length = 189927

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 475   gctctttaaattagcagcatga 496
             ||||||||||||||||||||||
Sbjct: 81446 gctctttaaattagcagcatga 81425

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>gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence
          Length = 500

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 aattttgaagagtgtttgaag 366
           |||||||||||||||||||||
Sbjct: 162 aattttgaagagtgtttgaag 142

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>emb|AL135785.10| Human DNA sequence from clone RP11-113O24 on chromosome 9p11-13.3
             Contains a novel gene, possible ortholog of mouse
             insulin-like growth factor binding protein 7 (IGFBP7), a
             novel gene similar to aldehyde dehydrogenase 1 family,
             member B1 (ALDH5, ALDHX, MGC2230) (ALDH1B1), a novel gene
             and four CpG islands, complete sequence
          Length = 166207

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 373   ggctgcctctgaaggtgttgc 393
             |||||||||||||||||||||
Sbjct: 79819 ggctgcctctgaaggtgttgc 79799

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>emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromosome 4, complete sequence
          Length = 131053

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    agccacagcaacccaggatc 156
              ||||||||||||||||||||
Sbjct: 114977 agccacagcaacccaggatc 114996

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>emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplotype H01, clone BAC 490B10
          Length = 154782

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    agccacagcaacccaggatc 156
              ||||||||||||||||||||
Sbjct: 114031 agccacagcaacccaggatc 114012

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>emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromosome 7, complete
             sequence
          Length = 122162

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 76694 agccacagcaacccaggatc 76713

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>emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromosome 17, complete
             sequence
          Length = 166118

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 29160 agccacagcaacccaggatc 29141

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>gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome 7, complete sequence
          Length = 164223

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 339    tcttgataattttgaagagtgttt 362
              |||||| |||||||||||||||||
Sbjct: 105946 tcttgagaattttgaagagtgttt 105969

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>emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chromosome 7, complete
              sequence
          Length = 175108

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    agccacagcaacccaggatc 156
              ||||||||||||||||||||
Sbjct: 162018 agccacagcaacccaggatc 162037

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>emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chromosome 7, complete
              sequence
          Length = 175487

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    agccacagcaacccaggatc 156
              ||||||||||||||||||||
Sbjct: 144535 agccacagcaacccaggatc 144516

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>gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, complete sequence
          Length = 226307

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 339   tcttgataattttgaagagtgttt 362
             |||||| |||||||||||||||||
Sbjct: 23286 tcttgagaattttgaagagtgttt 23309

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>emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chromosome Xq23-24,
             complete sequence
          Length = 105329

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   gttcctcttcagcaccaggt 176
             ||||||||||||||||||||
Sbjct: 25779 gttcctcttcagcaccaggt 25760

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>emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on chromosome 13q33.1-34
              Contains a the 3' end of a novel gene (MGC35169) and 2 CpG
              islands, complete sequence
          Length = 179959

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    ttcttgataattttgaagag 357
              ||||||||||||||||||||
Sbjct: 126184 ttcttgataattttgaagag 126203

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>emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signalling protein and AHCY gene for
              S-adenosylhomocysteine hydrolase
          Length = 204138

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    agccacagcaacccaggatc 156
              ||||||||||||||||||||
Sbjct: 148219 agccacagcaacccaggatc 148238

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>emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete sequence
          Length = 151259

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 76526 agccacagcaacccaggatc 76545



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 137  agccacagcaacccaggatc 156
            ||||||||||||||||||||
Sbjct: 7098 agccacagcaacccaggatc 7117

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>gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence
          Length = 76665

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  agccacagcaacccaggatc 156
            ||||||||||||||||||||
Sbjct: 6678 agccacagcaacccaggatc 6659

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>gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete sequence
          Length = 34907

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   attttgaagagtgtttgaag 366
             ||||||||||||||||||||
Sbjct: 30944 attttgaagagtgtttgaag 30963

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>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    agccacagcaacccaggatc 156
              ||||||||||||||||||||
Sbjct: 346739 agccacagcaacccaggatc 346758

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>dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, SLA-11 pseudogene,
             complete cds
          Length = 147386

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 15925 agccacagcaacccaggatc 15906

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>gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, complete sequence
          Length = 39786

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   tcttgataattttgaagagt 358
             ||||||||||||||||||||
Sbjct: 22531 tcttgataattttgaagagt 22550

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>gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosome 9, complete sequence
          Length = 161507

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    tgaaatgtcatgatatacag 62
             ||||||||||||||||||||
Sbjct: 24000 tgaaatgtcatgatatacag 23981

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>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence
          Length = 172252

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 82183 agccacagcaacccaggatc 82202

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 451      ctcttctattctttgcagct 470
                ||||||||||||||||||||
Sbjct: 10059259 ctcttctattctttgcagct 10059240

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 7        aagagcacactaaacctttt 26
                ||||||||||||||||||||
Sbjct: 20548065 aagagcacactaaacctttt 20548046



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 7        aagagcacactaaacctttt 26
                ||||||||||||||||||||
Sbjct: 20546139 aagagcacactaaacctttt 20546120

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>dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signaling protein and
             S-adenosylhomocysteine hydrolase, complete cds
          Length = 127234

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 29241 agccacagcaacccaggatc 29260

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>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence
          Length = 155710

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 24945 agccacagcaacccaggatc 24926

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>gb|AC092534.4| Homo sapiens BAC clone RP13-629D7 from 2, complete sequence
          Length = 33335

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   aattgagtggtttctgctct 542
             ||||||||||||||||||||
Sbjct: 18715 aattgagtggtttctgctct 18696

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>gb|DQ020488.1| Sus scrofa clone BAC KNP_798F4, complete sequence
          Length = 125904

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 68226 agccacagcaacccaggatc 68245

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>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1254_E07
          Length = 124028

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aagagcacactaaacctttt 26
             ||||||||||||||||||||
Sbjct: 65712 aagagcacactaaacctttt 65693



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aagagcacactaaacctttt 26
             ||||||||||||||||||||
Sbjct: 63786 aagagcacactaaacctttt 63767

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>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0515E01
          Length = 140063

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aagagcacactaaacctttt 26
             ||||||||||||||||||||
Sbjct: 13723 aagagcacactaaacctttt 13704



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aagagcacactaaacctttt 26
             ||||||||||||||||||||
Sbjct: 11797 aagagcacactaaacctttt 11778

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>gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence
          Length = 93393

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 47778 agccacagcaacccaggatc 47759

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>gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complete sequence
          Length = 196682

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 43   tgaaatgtcatgatatacag 62
            ||||||||||||||||||||
Sbjct: 3700 tgaaatgtcatgatatacag 3719

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 451      ctcttctattctttgcagct 470
                ||||||||||||||||||||
Sbjct: 10059144 ctcttctattctttgcagct 10059125

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>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 451    ctcttctattctttgcagct 470
              ||||||||||||||||||||
Sbjct: 103362 ctcttctattctttgcagct 103381

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>emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chromosome 17, complete
             sequence
          Length = 168798

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 57612 agccacagcaacccaggatc 57593

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>emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chromosome 7, complete
             sequence
          Length = 165092

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   agccacagcaacccaggatc 156
             ||||||||||||||||||||
Sbjct: 19794 agccacagcaacccaggatc 19775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,383,042
Number of Sequences: 3902068
Number of extensions: 4383042
Number of successful extensions: 77739
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77449
Number of HSP's gapped (non-prelim): 284
length of query: 557
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 534
effective length of database: 17,143,297,704
effective search space: 9154520973936
effective search space used: 9154520973936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result