ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
2dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
3dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
4dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
5dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
6ref|NM_191406.1| Oryza sativa (japonica cultivar-group), predic... 214 2e-52
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 188 1e-44
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
9gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 188 1e-44
10dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
11gb|AY107387.1| Zea mays PCO149313 mRNA sequence 159 1e-35
12gb|DQ356247.1| Cooperia oncophora clone Co4 depsiphilin mRNA, co... 46 0.10
13gb|DQ356246.1| Cooperia oncophora clone Co2 depsiphilin mRNA, co... 46 0.10
14gb|AC004613.1| Homo sapiens PAC clone RP4-651K2 from 7, complete... 44 0.40
15gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromoso... 44 0.40
16gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, comp... 42 1.6
17dbj|D10511.2| Homo sapiens MAT gene for mitochondrial acetoacety... 42 1.6
18emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 i... 42 1.6
19dbj|AP002433.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.6
20gb|AC101807.12| Mus musculus chromosome 18, clone RP24-251J22, c... 40 6.2
21emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 i... 40 6.2
22ref|XM_810566.1| Trypanosoma cruzi strain CL Brener mucin TcMUCI... 40 6.2
23ref|XM_816612.1| Trypanosoma cruzi strain CL Brener mucin TcMUCI... 40 6.2
24ref|XM_812621.1| Trypanosoma cruzi strain CL Brener mucin TcMUCI... 40 6.2
25ref|XM_810828.1| Trypanosoma cruzi strain CL Brener mucin TcMUCI... 40 6.2
26gb|AC145866.3| Pan troglodytes BAC clone RP43-21B7 from 7, compl... 40 6.2
27emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chro... 40 6.2
28emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on ch... 40 6.2
29emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chro... 40 6.2
30emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chr... 40 6.2
31emb|AL513478.10| Human DNA sequence from clone RP11-327I22 on ch... 40 6.2
32gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 6.2
33emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on ch... 40 6.2
34emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chr... 40 6.2
35emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P... 40 6.2
36emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in... 40 6.2
37emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 i... 40 6.2
38emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chro... 40 6.2
39emb|CR548622.8| Zebrafish DNA sequence from clone DKEY-189A9 in ... 40 6.2
40emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, ... 40 6.2
41emb|CR318610.8| Zebrafish DNA sequence from clone CH211-14B14 in... 40 6.2
42emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in... 40 6.2
43gb|AC120338.4| Homo sapiens X BAC RP11-791N19 (Roswell Park Canc... 40 6.2
44gb|AC099605.9| Mus musculus chromosome 18, clone RP23-349G24, co... 40 6.2
45gb|AC068305.30|AC068305 Homo sapiens 12 BAC RP11-557F20 (Roswell... 40 6.2
46emb|BX294395.15| Zebrafish DNA sequence from clone CH211-220B11 ... 40 6.2
47emb|BX296526.5| Zebrafish DNA sequence from clone DKEY-229D2 in ... 40 6.2
48gb|AC090358.16| Homo sapiens chromosome 18, clone RP11-775G23, c... 40 6.2
49emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chr... 40 6.2
50emb|BX005463.5| Zebrafish DNA sequence from clone CH211-177H19 i... 40 6.2
51gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete se... 40 6.2
52emb|BX649231.4| Zebrafish DNA sequence from clone DKEY-225H23 in... 40 6.2
53emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in... 40 6.2
54gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.2 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  216 bits (109), Expect = 5e-53
 Identities = 184/209 (88%)
 Strand = Plus / Minus

                                                                            
Query: 253      ctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccg 312
                ||||||| |||||||||||||||||||||||||| || ||||| || || ||||| || |
Sbjct: 32458055 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 32457996

                                                                            
Query: 313      agtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtgg 372
                |||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || ||||
Sbjct: 32457995 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 32457936

                                                                            
Query: 373      tgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgc 432
                ||||||| || || ||||| |||||||||||||||||||||  |||||| ||||||||||
Sbjct: 32457935 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgc 32457876

                                             
Query: 433      cctcatctgacatcccacagccaatgctt 461
                ||||||||||||||||||| |||||||||
Sbjct: 32457875 cctcatctgacatcccacaaccaatgctt 32457847



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 105      aaatatctaatatgaaacaattctctgacttc 136
                |||||||||||||| ||||| |||||||||||
Sbjct: 32458183 aaatatctaatatggaacaactctctgacttc 32458152
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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score =  216 bits (109), Expect = 5e-53
 Identities = 184/209 (88%)
 Strand = Plus / Minus

                                                                         
Query: 253   ctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccg 312
             ||||||| |||||||||||||||||||||||||| || ||||| || || ||||| || |
Sbjct: 45576 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 45517

                                                                         
Query: 313   agtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtgg 372
             |||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || ||||
Sbjct: 45516 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 45457

                                                                         
Query: 373   tgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgc 432
             ||||||| || || ||||| |||||||||||||||||||||  |||||| ||||||||||
Sbjct: 45456 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgc 45397

                                          
Query: 433   cctcatctgacatcccacagccaatgctt 461
             ||||||||||||||||||| |||||||||
Sbjct: 45396 cctcatctgacatcccacaaccaatgctt 45368



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 105   aaatatctaatatgaaacaattctctgacttc 136
             |||||||||||||| ||||| |||||||||||
Sbjct: 45704 aaatatctaatatggaacaactctctgacttc 45673
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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1143G03
          Length = 137770

 Score =  216 bits (109), Expect = 5e-53
 Identities = 184/209 (88%)
 Strand = Plus / Minus

                                                                          
Query: 253    ctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccg 312
              ||||||| |||||||||||||||||||||||||| || ||||| || || ||||| || |
Sbjct: 137552 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 137493

                                                                          
Query: 313    agtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtgg 372
              |||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || ||||
Sbjct: 137492 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 137433

                                                                          
Query: 373    tgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgc 432
              ||||||| || || ||||| |||||||||||||||||||||  |||||| ||||||||||
Sbjct: 137432 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgc 137373

                                           
Query: 433    cctcatctgacatcccacagccaatgctt 461
              ||||||||||||||||||| |||||||||
Sbjct: 137372 cctcatctgacatcccacaaccaatgctt 137344



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 105    aaatatctaatatgaaacaattctctgacttc 136
              |||||||||||||| ||||| |||||||||||
Sbjct: 137680 aaatatctaatatggaacaactctctgacttc 137649
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>dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A03, full
            insert sequence
          Length = 1761

 Score =  216 bits (109), Expect = 5e-53
 Identities = 184/209 (88%)
 Strand = Plus / Minus

                                                                        
Query: 253  ctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccg 312
            ||||||| |||||||||||||||||||||||||| || ||||| || || ||||| || |
Sbjct: 1505 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 1446

                                                                        
Query: 313  agtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtgg 372
            |||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || ||||
Sbjct: 1445 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 1386

                                                                        
Query: 373  tgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgc 432
            ||||||| || || ||||| |||||||||||||||||||||  |||||| ||||||||||
Sbjct: 1385 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgc 1326

                                         
Query: 433  cctcatctgacatcccacagccaatgctt 461
            ||||||||||||||||||| |||||||||
Sbjct: 1325 cctcatctgacatcccacaaccaatgctt 1297



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 105  aaatatctaatatgaaacaattctctgacttc 136
            |||||||||||||| ||||| |||||||||||
Sbjct: 1633 aaatatctaatatggaacaactctctgacttc 1602
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>dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064M23, full
            insert sequence
          Length = 3155

 Score =  216 bits (109), Expect = 5e-53
 Identities = 184/209 (88%)
 Strand = Plus / Minus

                                                                        
Query: 253  ctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccg 312
            ||||||| |||||||||||||||||||||||||| || ||||| || || ||||| || |
Sbjct: 2922 ctcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgg 2863

                                                                        
Query: 313  agtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtgg 372
            |||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || ||||
Sbjct: 2862 agtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtgg 2803

                                                                        
Query: 373  tgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgc 432
            ||||||| || || ||||| |||||||||||||||||||||  |||||| ||||||||||
Sbjct: 2802 tgcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgc 2743

                                         
Query: 433  cctcatctgacatcccacagccaatgctt 461
            ||||||||||||||||||| |||||||||
Sbjct: 2742 cctcatctgacatcccacaaccaatgctt 2714



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 105  aaatatctaatatgaaacaattctctgacttc 136
            |||||||||||||| ||||| |||||||||||
Sbjct: 3050 aaatatctaatatggaacaactctctgacttc 3019
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>ref|NM_191406.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2691

 Score =  214 bits (108), Expect = 2e-52
 Identities = 183/208 (87%)
 Strand = Plus / Minus

                                                                        
Query: 254  tcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatccga 313
            |||||| |||||||||||||||||||||||||| || ||||| || || ||||| || ||
Sbjct: 2691 tcaccgtcccttggggttcatgatctgtgagaagacagcgctaggagtaagcccgtcgga 2632

                                                                        
Query: 314  gtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgtggt 373
            ||| ||||| || ||||||||||| |||||||||| ||| || |||||||| || |||||
Sbjct: 2631 gtctatgctagcaacactttggtcgcccatgcttatggacgtggttgtggttgtagtggt 2572

                                                                        
Query: 374  gcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagtgcc 433
            |||||| || || ||||| |||||||||||||||||||||  |||||| |||||||||||
Sbjct: 2571 gcttgactcgatcgatggatcattgggatccttctttccaggcatcacaaggggagtgcc 2512

                                        
Query: 434  ctcatctgacatcccacagccaatgctt 461
            |||||||||||||||||| |||||||||
Sbjct: 2511 ctcatctgacatcccacaaccaatgctt 2484
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  188 bits (95), Expect = 1e-44
 Identities = 182/211 (86%)
 Strand = Plus / Minus

                                                                            
Query: 251      acctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatc 310
                ||||||||| |||||||||||||||||||| ||||| || || || ||||||||||||||
Sbjct: 12284688 acctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagcccatc 12284629

                                                                            
Query: 311      cgagtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgt 370
                |||||| || || || ||||| || |||||||||||||  || || ||||| || |||||
Sbjct: 12284628 cgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtcgt 12284569

                                                                            
Query: 371      ggtgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagt 430
                ||||||||| || || ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 12284568 ggtgcttgactcgatagatggatcattgggatccttctttccaactatcacaaggggagt 12284509

                                               
Query: 431      gccctcatctgacatcccacagccaatgctt 461
                ||  || |||||||||||||| |||| ||||
Sbjct: 12284508 gctgtcgtctgacatcccacatccaaggctt 12284478



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 167      caaactcatgaaaatatgctgaatgaata 195
                |||||||||||| ||||||||||||||||
Sbjct: 12284753 caaactcatgaacatatgctgaatgaata 12284725
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  188 bits (95), Expect = 1e-44
 Identities = 182/211 (86%)
 Strand = Plus / Minus

                                                                            
Query: 251      acctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatc 310
                ||||||||| |||||||||||||||||||| ||||| || || || ||||||||||||||
Sbjct: 12281451 acctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagcccatc 12281392

                                                                            
Query: 311      cgagtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgt 370
                |||||| || || || ||||| || |||||||||||||  || || ||||| || |||||
Sbjct: 12281391 cgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtcgt 12281332

                                                                            
Query: 371      ggtgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagt 430
                ||||||||| || || ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 12281331 ggtgcttgactcgatagatggatcattgggatccttctttccaactatcacaaggggagt 12281272

                                               
Query: 431      gccctcatctgacatcccacagccaatgctt 461
                ||  || |||||||||||||| |||| ||||
Sbjct: 12281271 gctgtcgtctgacatcccacatccaaggctt 12281241



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 167      caaactcatgaaaatatgctgaatgaata 195
                |||||||||||| ||||||||||||||||
Sbjct: 12281516 caaactcatgaacatatgctgaatgaata 12281488
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score =  188 bits (95), Expect = 1e-44
 Identities = 182/211 (86%)
 Strand = Plus / Minus

                                                                         
Query: 251   acctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatc 310
             ||||||||| |||||||||||||||||||| ||||| || || || ||||||||||||||
Sbjct: 54221 acctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagcccatc 54162

                                                                         
Query: 311   cgagtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgt 370
             |||||| || || || ||||| || |||||||||||||  || || ||||| || |||||
Sbjct: 54161 cgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtcgt 54102

                                                                         
Query: 371   ggtgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagt 430
             ||||||||| || || ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 54101 ggtgcttgactcgatagatggatcattgggatccttctttccaactatcacaaggggagt 54042

                                            
Query: 431   gccctcatctgacatcccacagccaatgctt 461
             ||  || |||||||||||||| |||| ||||
Sbjct: 54041 gctgtcgtctgacatcccacatccaaggctt 54011



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 167   caaactcatgaaaatatgctgaatgaata 195
             |||||||||||| ||||||||||||||||
Sbjct: 54286 caaactcatgaacatatgctgaatgaata 54258
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>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full
            insert sequence
          Length = 3171

 Score =  188 bits (95), Expect = 1e-44
 Identities = 182/211 (86%)
 Strand = Plus / Minus

                                                                        
Query: 251  acctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatc 310
            ||||||||| |||||||||||||||||||| ||||| || || || ||||||||||||||
Sbjct: 2927 acctcaccgtcccttggggttcatgatctgcgagaagacagcactaggcgtcagcccatc 2868

                                                                        
Query: 311  cgagtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgt 370
            |||||| || || || ||||| || |||||||||||||  || || ||||| || |||||
Sbjct: 2867 cgagtcaatacttgcaacactctgctcacccatgcttatcgaggtagttgtcgttgtcgt 2808

                                                                        
Query: 371  ggtgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagt 430
            ||||||||| || || ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 2807 ggtgcttgactcgatagatggatcattgggatccttctttccaactatcacaaggggagt 2748

                                           
Query: 431  gccctcatctgacatcccacagccaatgctt 461
            ||  || |||||||||||||| |||| ||||
Sbjct: 2747 gctgtcgtctgacatcccacatccaaggctt 2717



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 167  caaactcatgaaaatatgctgaatgaata 195
            |||||||||||| ||||||||||||||||
Sbjct: 2992 caaactcatgaacatatgctgaatgaata 2964
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>gb|AY107387.1| Zea mays PCO149313 mRNA sequence
          Length = 1336

 Score =  159 bits (80), Expect = 1e-35
 Identities = 180/211 (85%), Gaps = 3/211 (1%)
 Strand = Plus / Minus

                                                                        
Query: 251  acctcaccgccccttggggttcatgatctgtgagaacaccgcgcttggcgtcagcccatc 310
            |||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 1083 acctcaccgccccttggggttcatgatctgcgagaagacggcgctaggcgtcagcccatc 1024

                                                                        
Query: 311  cgagtcgatgctcgcgacactttggtcacccatgcttaaggaagttgttgtggtcgtcgt 370
            |||||| || |||||||| |||||||| ||||||||||  ||||| || || || || ||
Sbjct: 1023 cgagtctatactcgcgacgctttggtcgcccatgcttatagaagtggtggttgtggtggt 964

                                                                        
Query: 371  ggtgcttgaatcaattgatgggtcattgggatccttctttccaaccatcacgaggggagt 430
            ||||||||| || || |||||||| || || |||||||| || |||||||  | ||| | 
Sbjct: 963  ggtgcttgactcgatcgatgggtcgttcgggtccttcttcccgaccatca--atggg-gc 907

                                           
Query: 431  gccctcatctgacatcccacagccaatgctt 461
            |||||| ||||||||||| ||||||| ||||
Sbjct: 906  gccctcgtctgacatcccgcagccaaggctt 876
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>gb|DQ356247.1| Cooperia oncophora clone Co4 depsiphilin mRNA, complete cds
          Length = 3565

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 351 gaagttgttgtggtcgtcgtggt 373
           |||||||||||||||||||||||
Sbjct: 548 gaagttgttgtggtcgtcgtggt 526
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>gb|DQ356246.1| Cooperia oncophora clone Co2 depsiphilin mRNA, complete cds
          Length = 3038

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 351 gaagttgttgtggtcgtcgtggt 373
           |||||||||||||||||||||||
Sbjct: 437 gaagttgttgtggtcgtcgtggt 415
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>gb|AC004613.1| Homo sapiens PAC clone RP4-651K2 from 7, complete sequence
          Length = 121166

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 392   gtcattgggatccttctttcca 413
             ||||||||||||||||||||||
Sbjct: 59328 gtcattgggatccttctttcca 59349
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>gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromosome unknown, complete
             sequence
          Length = 163278

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 117   tgaaacaattctctgacttcta 138
             ||||||||||||||||||||||
Sbjct: 52897 tgaaacaattctctgacttcta 52876
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>gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, complete sequence
          Length = 188643

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   agcacaaactcatgaaaatat 183
             |||||||||||||||||||||
Sbjct: 60366 agcacaaactcatgaaaatat 60346
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>dbj|D10511.2| Homo sapiens MAT gene for mitochondrial acetoacetyl-CoA thiolase,
           complete cds
          Length = 4392

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 163 agcacaaactcatgaaaatat 183
           |||||||||||||||||||||
Sbjct: 627 agcacaaactcatgaaaatat 607
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>emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 in linkage group 9,
            complete sequence
          Length = 201771

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 21   ggtacaacaacacatgcaaat 41
            |||||||||||||||||||||
Sbjct: 1138 ggtacaacaacacatgcaaat 1118
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>dbj|AP002433.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-144G7, complete
              sequence
          Length = 165164

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    agcacaaactcatgaaaatat 183
              |||||||||||||||||||||
Sbjct: 105823 agcacaaactcatgaaaatat 105803
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>gb|AC101807.12| Mus musculus chromosome 18, clone RP24-251J22, complete sequence
          Length = 171409

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     aataagtcatagagtcatta 58
              ||||||||||||||||||||
Sbjct: 160008 aataagtcatagagtcatta 159989
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>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11,
              complete sequence
          Length = 198600

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    atgaaaatatgctgaatgaa 193
              ||||||||||||||||||||
Sbjct: 104691 atgaaaatatgctgaatgaa 104710
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>ref|XM_810566.1| Trypanosoma cruzi strain CL Brener mucin TcMUCII
           (Tc00.1047053506939.40) partial mRNA
          Length = 564

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 354 gttgttgtggtcgtcgtggt 373
           ||||||||||||||||||||
Sbjct: 416 gttgttgtggtcgtcgtggt 397
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>ref|XM_816612.1| Trypanosoma cruzi strain CL Brener mucin TcMUCII
           (Tc00.1047053508873.150) partial mRNA
          Length = 564

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 354 gttgttgtggtcgtcgtggt 373
           ||||||||||||||||||||
Sbjct: 416 gttgttgtggtcgtcgtggt 397
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>ref|XM_812621.1| Trypanosoma cruzi strain CL Brener mucin TcMUCI
           (Tc00.1047053511149.130) partial mRNA
          Length = 387

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 354 gttgttgtggtcgtcgtggt 373
           ||||||||||||||||||||
Sbjct: 227 gttgttgtggtcgtcgtggt 208
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>ref|XM_810828.1| Trypanosoma cruzi strain CL Brener mucin TcMUCII
           (Tc00.1047053511099.230) partial mRNA
          Length = 337

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 354 gttgttgtggtcgtcgtggt 373
           ||||||||||||||||||||
Sbjct: 177 gttgttgtggtcgtcgtggt 158
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>gb|AC145866.3| Pan troglodytes BAC clone RP43-21B7 from 7, complete sequence
          Length = 189814

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   agacagcaagagcacaaactcatg 176
             ||||||||||||||||| ||||||
Sbjct: 91746 agacagcaagagcacaagctcatg 91723
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>emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chromosome 9 Contains two
              novel pseudogenes, a novel gene, a pseudogene similar to
              part of double homeobox, 4 (DUX4), a FSHD region gene 1
              (FRG1) pseudogene and four CpG islands, complete sequence
          Length = 191980

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    ctttggtcacccatgcttaa 349
              ||||||||||||||||||||
Sbjct: 173493 ctttggtcacccatgcttaa 173512
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>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains
             three novel pseudogenes, a pseudogene similar to part of
             meprin A, alpha (PABA peptide hydrolase) (MEP1A), a
             pseudogene similar to part of G protein-coupled receptor
             116 (GPR116), two novel genes, the 5' end of a novel gene
             similar to ankyrin repeat domain 20A (ANKRD20A) and three
             CpG islands, complete sequence
          Length = 165886

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   ctttggtcacccatgcttaa 349
             ||||||||||||||||||||
Sbjct: 83941 ctttggtcacccatgcttaa 83922
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>emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chromosome 9 Contains a
             novel gene, two novel pseudogenes, a  pseudogene similar
             to part of myosin V family protein, a tumor suppressor
             deleted in oral cancer-related 1 (DOC-1R) pseudogene, a
             pseudogene similar to part of prostaglandin E receptor 4
             (subtype EP4) (PTGER4) and a CpG island, complete sequence
          Length = 163569

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   ctttggtcacccatgcttaa 349
             ||||||||||||||||||||
Sbjct: 31823 ctttggtcacccatgcttaa 31842
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>emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chromosome 9 Contains two
              novel pseudogene, a CDRT15 protein pseudogene, a pseudogene
              similar to part of meprin A, alpha (PABA peptide hydrolase)
              (MEP1A) and two CpG islands, complete sequence
          Length = 178933

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    ctttggtcacccatgcttaa 349
              ||||||||||||||||||||
Sbjct: 136879 ctttggtcacccatgcttaa 136860
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>emb|AL513478.10| Human DNA sequence from clone RP11-327I22 on chromosome 9 Contains a
              pseudogene similar to part of sorting nexin associated
              golgi protein 1 (SNAG1), the ANKRD20A gene for ankyrin
              repeat domain 20A, five novel genes, a pseudogene similar
              to part of eprin A, alpha (PABA peptide hydrolase) (MEP1A)
              and a CpG island, complete sequence
          Length = 180498

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    ctttggtcacccatgcttaa 349
              ||||||||||||||||||||
Sbjct: 170412 ctttggtcacccatgcttaa 170431
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 156     cagcaagagcacaaactcat 175
               ||||||||||||||||||||
Sbjct: 2367821 cagcaagagcacaaactcat 2367802
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>emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on chromosome 9 Contains a
              pseudogene similar to part of ribosomal protein L7a
              (RPL7A), three novel genes, three novel pseudogene and two
              CpG islands, complete sequence
          Length = 175271

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    ctttggtcacccatgcttaa 349
              ||||||||||||||||||||
Sbjct: 172244 ctttggtcacccatgcttaa 172225
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>emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chromosome 13 Contains the
             3' end of the CDK8 gene for cyclin-dependent kinase 8,
             complete sequence
          Length = 144626

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 163   agcacaaactcatgaaaatatgct 186
             ||||||||| ||||||||||||||
Sbjct: 65285 agcacaaacccatgaaaatatgct 65308
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>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a
              novel gene, the 5' end of the TCF8 gene for transcription
              factor 8 (represses interleukin 2 expression)
              (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a
              pseudogene similar to part of serine palmitoyltransferase,
              long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1,
              SPT1, SPTI) and two CpG islands, complete sequence
          Length = 187517

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    ctgaatgaataagttaggca 204
              ||||||||||||||||||||
Sbjct: 174428 ctgaatgaataagttaggca 174447
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>emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in linkage group 21,
            complete sequence
          Length = 129478

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  atgaaaatatgctgaatgaa 193
            ||||||||||||||||||||
Sbjct: 2764 atgaaaatatgctgaatgaa 2745
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>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21,
             complete sequence
          Length = 147564

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   atgaaaatatgctgaatgaa 193
             ||||||||||||||||||||
Sbjct: 41288 atgaaaatatgctgaatgaa 41269
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>emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chromosome 9 Contains a
             tumor suppressor deleted in oral cancer-related 1 (DOC-1R)
             pseudogene, a novel pseudogene and a CpG island, complete
             sequence
          Length = 163556

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   ctttggtcacccatgcttaa 349
             ||||||||||||||||||||
Sbjct: 31811 ctttggtcacccatgcttaa 31830
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>emb|CR548622.8| Zebrafish DNA sequence from clone DKEY-189A9 in linkage group 11,
             complete sequence
          Length = 137993

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   atgaaaatatgctgaatgaa 193
             ||||||||||||||||||||
Sbjct: 16675 atgaaaatatgctgaatgaa 16694
to top
>emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, complete sequence
          Length = 211060

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    atgaaaatatgctgaatgaa 193
              ||||||||||||||||||||
Sbjct: 156937 atgaaaatatgctgaatgaa 156956
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>emb|CR318610.8| Zebrafish DNA sequence from clone CH211-14B14 in linkage group 5,
              complete sequence
          Length = 164564

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    atgaaaatatgctgaatgaa 193
              ||||||||||||||||||||
Sbjct: 152626 atgaaaatatgctgaatgaa 152607
to top
>emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in linkage group 13,
              complete sequence
          Length = 166397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    atgaaaatatgctgaatgaa 193
              ||||||||||||||||||||
Sbjct: 141164 atgaaaatatgctgaatgaa 141145
to top
>gb|AC120338.4| Homo sapiens X BAC RP11-791N19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109001

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   aaaatatgctgaatgaataa 196
             ||||||||||||||||||||
Sbjct: 94435 aaaatatgctgaatgaataa 94454
to top
>gb|AC099605.9| Mus musculus chromosome 18, clone RP23-349G24, complete sequence
          Length = 203175

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     aataagtcatagagtcatta 58
              ||||||||||||||||||||
Sbjct: 183715 aataagtcatagagtcatta 183734
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>gb|AC068305.30|AC068305 Homo sapiens 12 BAC RP11-557F20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 131811

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   ctgaatgaataagttaggca 204
             ||||||||||||||||||||
Sbjct: 54484 ctgaatgaataagttaggca 54503
to top
>emb|BX294395.15| Zebrafish DNA sequence from clone CH211-220B11 in linkage group 5,
             complete sequence
          Length = 213232

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   atgaaaatatgctgaatgaa 193
             ||||||||||||||||||||
Sbjct: 65218 atgaaaatatgctgaatgaa 65237
to top
>emb|BX296526.5| Zebrafish DNA sequence from clone DKEY-229D2 in linkage group 5,
             complete sequence
          Length = 179086

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   atgaaaatatgctgaatgaa 193
             ||||||||||||||||||||
Sbjct: 19761 atgaaaatatgctgaatgaa 19742
to top
>gb|AC090358.16| Homo sapiens chromosome 18, clone RP11-775G23, complete sequence
          Length = 176680

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    atgcaaataagtcatagagt 53
             ||||||||||||||||||||
Sbjct: 10666 atgcaaataagtcatagagt 10647
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>emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chromosome 22, complete
             sequence
          Length = 219376

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   ctttggtcacccatgcttaa 349
             ||||||||||||||||||||
Sbjct: 90460 ctttggtcacccatgcttaa 90441
to top
>emb|BX005463.5| Zebrafish DNA sequence from clone CH211-177H19 in linkage group 6,
             complete sequence
          Length = 163804

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   atgaaaatatgctgaatgaa 193
             ||||||||||||||||||||
Sbjct: 47713 atgaaaatatgctgaatgaa 47694
to top
>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence
          Length = 198084

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   ctgaatgaataagttaggca 204
             ||||||||||||||||||||
Sbjct: 56841 ctgaatgaataagttaggca 56860
to top
>emb|BX649231.4| Zebrafish DNA sequence from clone DKEY-225H23 in linkage group 20,
             complete sequence
          Length = 153569

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   atgaaaatatgctgaatgaa 193
             ||||||||||||||||||||
Sbjct: 62267 atgaaaatatgctgaatgaa 62248
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>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23,
              complete sequence
          Length = 178148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    atgaaaatatgctgaatgaa 193
              ||||||||||||||||||||
Sbjct: 129196 atgaaaatatgctgaatgaa 129177
to top
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    agcagacccagatttttacc 248
              ||||||||||||||||||||
Sbjct: 165101 agcagacccagatttttacc 165120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,887,105
Number of Sequences: 3902068
Number of extensions: 3887105
Number of successful extensions: 71732
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71519
Number of HSP's gapped (non-prelim): 213
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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