| Clone Name | rbags27o03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 71.9 bits (36), Expect = 1e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 111 ttctcgaggccctggagagtcgccctacagatgctagcttcaatgctgccctgatcttga 170 |||||||||| |||||||| | || |||||||| ||||||| |||||||||||||||| Sbjct: 22167421 ttctcgaggctctggagagcctacccacagatgccagcttcagcgctgccctgatcttga 22167480 Query: 171 tccacttacgtggcgacaaaggtgtcgctgccccttcactgctaaaaagctgagaaatga 230 |||||| ||||| ||||| || ||| | | ||| ||||| ||| ||||||||||| Sbjct: 22167481 cccacttgcgtggggacaatggcaccgcaactctttcgttgctagaaaactgagaaatga 22167540 Query: 231 agctttgtatgagctgatca 250 | | ||||||||||||||| Sbjct: 22167541 aattctgtatgagctgatca 22167560
>dbj|AK067865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124K14, full insert sequence Length = 2169 Score = 71.9 bits (36), Expect = 1e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 111 ttctcgaggccctggagagtcgccctacagatgctagcttcaatgctgccctgatcttga 170 |||||||||| |||||||| | || |||||||| ||||||| |||||||||||||||| Sbjct: 1833 ttctcgaggctctggagagcctacccacagatgccagcttcagcgctgccctgatcttga 1774 Query: 171 tccacttacgtggcgacaaaggtgtcgctgccccttcactgctaaaaagctgagaaatga 230 |||||| ||||| ||||| || ||| | | ||| ||||| ||| ||||||||||| Sbjct: 1773 cccacttgcgtggggacaatggcaccgcaactctttcgttgctagaaaactgagaaatga 1714 Query: 231 agctttgtatgagctgatca 250 | | ||||||||||||||| Sbjct: 1713 aattctgtatgagctgatca 1694
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 71.9 bits (36), Expect = 1e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 111 ttctcgaggccctggagagtcgccctacagatgctagcttcaatgctgccctgatcttga 170 |||||||||| |||||||| | || |||||||| ||||||| |||||||||||||||| Sbjct: 22095766 ttctcgaggctctggagagcctacccacagatgccagcttcagcgctgccctgatcttga 22095825 Query: 171 tccacttacgtggcgacaaaggtgtcgctgccccttcactgctaaaaagctgagaaatga 230 |||||| ||||| ||||| || ||| | | ||| ||||| ||| ||||||||||| Sbjct: 22095826 cccacttgcgtggggacaatggcaccgcaactctttcgttgctagaaaactgagaaatga 22095885 Query: 231 agctttgtatgagctgatca 250 | | ||||||||||||||| Sbjct: 22095886 aattctgtatgagctgatca 22095905
>emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123_B09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155585 Score = 71.9 bits (36), Expect = 1e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 111 ttctcgaggccctggagagtcgccctacagatgctagcttcaatgctgccctgatcttga 170 |||||||||| |||||||| | || |||||||| ||||||| |||||||||||||||| Sbjct: 85589 ttctcgaggctctggagagcctacccacagatgccagcttcagcgctgccctgatcttga 85530 Query: 171 tccacttacgtggcgacaaaggtgtcgctgccccttcactgctaaaaagctgagaaatga 230 |||||| ||||| ||||| || ||| | | ||| ||||| ||| ||||||||||| Sbjct: 85529 cccacttgcgtggggacaatggcaccgcaactctttcgttgctagaaaactgagaaatga 85470 Query: 231 agctttgtatgagctgatca 250 | | ||||||||||||||| Sbjct: 85469 aattctgtatgagctgatca 85450
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tggcgacaaaggtgtcgctgcc 202 |||||||||||||||||||||| Sbjct: 1642451 tggcgacaaaggtgtcgctgcc 1642472
>gb|AC026774.7| Homo sapiens chromosome 5 clone CTC-235G5, complete sequence Length = 108451 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 tgagaaatgaagctttgtatg 241 ||||||||||||||||||||| Sbjct: 89575 tgagaaatgaagctttgtatg 89595
>gb|AC120113.2| Homo sapiens chromosome 5 clone CTD-2324F19, complete sequence Length = 129346 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 tgagaaatgaagctttgtatg 241 ||||||||||||||||||||| Sbjct: 127250 tgagaaatgaagctttgtatg 127230
>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence Length = 339089 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 aagctgagaaatgaagctttg 237 ||||||||||||||||||||| Sbjct: 39822 aagctgagaaatgaagctttg 39802
>gb|AC105072.9| Mus musculus chromosome 5, clone RP24-167C6, complete sequence Length = 173710 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Minus Query: 207 cactgctaaaaagctgagaaatgaa 231 |||| |||||||||||||||||||| Sbjct: 136065 cacttctaaaaagctgagaaatgaa 136041
>gb|AC134463.3| Mus musculus BAC clone RP23-425N12 from 5, complete sequence Length = 200629 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Minus Query: 207 cactgctaaaaagctgagaaatgaa 231 |||| |||||||||||||||||||| Sbjct: 89236 cacttctaaaaagctgagaaatgaa 89212
>ref|XM_656095.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3583.2), mRNA Length = 2460 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ggcgacaaaggtgtcgctgc 201 |||||||||||||||||||| Sbjct: 1522 ggcgacaaaggtgtcgctgc 1541
>gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome 12, complete sequence Length = 182276 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 cacactattcagcagggtcatgtt 67 |||| ||||||||||||||||||| Sbjct: 18743 cacaatattcagcagggtcatgtt 18766
>gb|AC123869.4| Mus musculus BAC clone RP23-245M16 from 12, complete sequence Length = 167795 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 cacactattcagcagggtcatgtt 67 |||| ||||||||||||||||||| Sbjct: 20937 cacaatattcagcagggtcatgtt 20914
>emb|AL591502.10| Human DNA sequence from clone RP11-199C17 on chromosome 9 Contains the 5' end of the TBC1D2 gene for TBC1 domain family, member 2 (PARIS1, PARIS-1,DKFZP761D1823, DKFZp761D1823), the 3' end of the GPR51 gene for G protein-coupled receptor 51 (HG20, GABBR2, GPRC3B, GABABR2) and a CpG island, complete sequence Length = 156753 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gtaccagccttgcccttccc 91 |||||||||||||||||||| Sbjct: 13872 gtaccagccttgcccttccc 13891
>gb|AF291662.1| Aspergillus nidulans Kex2-like dibasic endoprotease ANPC gene, complete cds Length = 4688 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ggcgacaaaggtgtcgctgc 201 |||||||||||||||||||| Sbjct: 2268 ggcgacaaaggtgtcgctgc 2287
>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome Length = 1471282 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 aagctttgtatgagctgatc 249 |||||||||||||||||||| Sbjct: 306895 aagctttgtatgagctgatc 306876
>gb|AC102443.11| Mus musculus chromosome 3, clone RP24-191D1, complete sequence Length = 147088 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 aaaagctgagaaatgaagct 234 |||||||||||||||||||| Sbjct: 62951 aaaagctgagaaatgaagct 62970
>dbj|AB056726.1| Emericella nidulans kexB mRNA for kexin like processing protease, complete cds Length = 2785 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ggcgacaaaggtgtcgctgc 201 |||||||||||||||||||| Sbjct: 1622 ggcgacaaaggtgtcgctgc 1641
>emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in linkage group 5, complete sequence Length = 223754 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tgtcacaattgttatccaca 47 |||||||||||||||||||| Sbjct: 35337 tgtcacaattgttatccaca 35318
>emb|BX072549.4| Zebrafish DNA sequence from clone CH211-114A17 in linkage group 5, complete sequence Length = 167182 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tgtcacaattgttatccaca 47 |||||||||||||||||||| Sbjct: 71794 tgtcacaattgttatccaca 71775
>gb|AC147597.2| Gallus gallus BAC clone CH261-100D18 from chromosome unknown, complete sequence Length = 168372 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 223 agaaatgaagctttgtatgagctgatca 250 |||||||||||||| ||||| ||||||| Sbjct: 161343 agaaatgaagctttatatgaactgatca 161316 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,048,642 Number of Sequences: 3902068 Number of extensions: 2048642 Number of successful extensions: 37132 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37075 Number of HSP's gapped (non-prelim): 57 length of query: 264 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 242 effective length of database: 17,147,199,772 effective search space: 4149622344824 effective search space used: 4149622344824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)