ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC161757.5| Mus musculus BAC clone RP24-87P2 from chromosome ... 44 0.28
2gb|AC124428.4| Mus musculus BAC clone RP24-239M23 from 5, comple... 44 0.28
3gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial c... 42 1.1
4gb|AY270159.1| Triticum aestivum resistance protein T10rga2-1A g... 42 1.1
5gb|AF458280.1| Triticum urartu isolate Tu11498 rga2 protein (rga... 42 1.1
6gb|AF458279.1| Triticum monococcum isolate Tm896 rga2 protein (r... 42 1.1
7gb|AF458277.1| Triticum turgidum subsp. dicoccoides isolate Td98... 42 1.1
8gb|AF458276.1| Triticum turgidum subsp. dicoccoides isolate Td44... 42 1.1
9gb|AF458275.1| Triticum turgidum subsp. durum isolate Langdon rg... 42 1.1
10gb|AF458273.1| Triticum aestivum isolate ThLr101A rga2 protein (... 42 1.1
11gb|AF458272.1| Triticum aestivum isolate Weique rga2 protein (rg... 42 1.1
12gb|AF458271.1| Triticum aestivum isolate Tesia rga2 protein (rga... 42 1.1
13gb|AF458270.1| Triticum aestivum isolate Pavon rga2 protein (rga... 42 1.1
14gb|AF458269.1| Triticum aestivum isolate Opata rga2 protein (rga... 42 1.1
15gb|AF458268.1| Triticum aestivum isolate Nocazari rga2 protein (... 42 1.1
16gb|AF458267.1| Triticum aestivum isolate Galvez rga2 protein (rg... 42 1.1
17gb|AF458266.1| Triticum aestivum isolate Esmer rga2 protein (rga... 42 1.1
18dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 42 1.1
19gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156... 42 1.1
20gb|AF458278.1| Triticum monococcum isolate Tm13010 rga2 protein ... 40 4.3
21dbj|AK138355.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 40 4.3
22gb|AC055813.9| Homo sapiens chromosome 17, clone RP11-209M4, com... 40 4.3
23emb|AL808146.3| Mouse DNA sequence from clone RP23-52L10 on chro... 40 4.3 
>gb|AC161757.5| Mus musculus BAC clone RP24-87P2 from chromosome 5, complete sequence
          Length = 193583

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 46    cacatttctgtacatggaaagt 67
             ||||||||||||||||||||||
Sbjct: 93807 cacatttctgtacatggaaagt 93828
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>gb|AC124428.4| Mus musculus BAC clone RP24-239M23 from 5, complete sequence
          Length = 167334

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 46     cacatttctgtacatggaaagt 67
              ||||||||||||||||||||||
Sbjct: 153074 cacatttctgtacatggaaagt 153095
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>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative
             chromosome condensation factor (CCF), putative resistance
             protein (RGA-2), putative resistance protein (RGA2) and
             putative nodulin-like-like protein (NLL) gene, complete
             cds; and retrotransposons Josephine, Angela-2, Angela-4,
             Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6,
             Angela-5, Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 149   ctccctgtgtaaacaaatataagaccttt 177
             |||||| ||||||| ||||||||||||||
Sbjct: 29742 ctccctctgtaaactaatataagaccttt 29770



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 150   tccctgtgtaaacaaatataagaccttt 177
             ||||| ||||||| ||||||||||||||
Sbjct: 29821 tccctctgtaaactaatataagaccttt 29794
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>gb|AY270159.1| Triticum aestivum resistance protein T10rga2-1A gene, complete cds
          Length = 4768

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 149  ctccctgtgtaaacaaatataagaccttt 177
            |||||| ||||||| ||||||||||||||
Sbjct: 1187 ctccctctgtaaactaatataagaccttt 1159



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 150  tccctgtgtaaacaaatataagaccttt 177
            ||||| ||||||| ||||||||||||||
Sbjct: 1109 tccctctgtaaactaatataagaccttt 1136
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>gb|AF458280.1| Triticum urartu isolate Tu11498 rga2 protein (rga2) gene, partial
           cds
          Length = 1437

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 273 ctccctctgtaaactaatataagaccttt 245



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>gb|AF458279.1| Triticum monococcum isolate Tm896 rga2 protein (rga2) gene, partial
           cds
          Length = 1438

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 274 ctccctctgtaaactaatataagaccttt 246



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>gb|AF458277.1| Triticum turgidum subsp. dicoccoides isolate Td9803 rga2 protein
           (rga2) gene, partial cds
          Length = 1441

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 276 ctccctctgtaaactaatataagaccttt 248



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>gb|AF458276.1| Triticum turgidum subsp. dicoccoides isolate Td4467 rga2 protein
           (rga2) gene, partial cds
          Length = 1436

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 273 ctccctctgtaaactaatataagaccttt 245



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>gb|AF458275.1| Triticum turgidum subsp. durum isolate Langdon rga2 protein (rga2)
           gene, partial cds
          Length = 1438

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 273 ctccctctgtaaactaatataagaccttt 245



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>gb|AF458273.1| Triticum aestivum isolate ThLr101A rga2 protein (rga2) gene,
           partial cds
          Length = 1438

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 273 ctccctctgtaaactaatataagaccttt 245



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>gb|AF458272.1| Triticum aestivum isolate Weique rga2 protein (rga2) gene, partial
           cds
          Length = 1435

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 273 ctccctctgtaaactaatataagaccttt 245



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>gb|AF458271.1| Triticum aestivum isolate Tesia rga2 protein (rga2) gene, partial
           cds
          Length = 1438

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 273 ctccctctgtaaactaatataagaccttt 245



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>gb|AF458270.1| Triticum aestivum isolate Pavon rga2 protein (rga2) gene, partial
           cds
          Length = 1438

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 273 ctccctctgtaaactaatataagaccttt 245



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>gb|AF458269.1| Triticum aestivum isolate Opata rga2 protein (rga2) gene, partial
           cds
          Length = 1437

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 273 ctccctctgtaaactaatataagaccttt 245



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>gb|AF458268.1| Triticum aestivum isolate Nocazari rga2 protein (rga2) gene,
           partial cds
          Length = 1437

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 272 ctccctctgtaaactaatataagaccttt 244



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 194 tccctctgtaaactaatataagaccttt 221
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>gb|AF458267.1| Triticum aestivum isolate Galvez rga2 protein (rga2) gene, partial
           cds
          Length = 1436

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 272 ctccctctgtaaactaatataagaccttt 244



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 194 tccctctgtaaactaatataagaccttt 221
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>gb|AF458266.1| Triticum aestivum isolate Esmer rga2 protein (rga2) gene, partial
           cds
          Length = 1437

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 149 ctccctgtgtaaacaaatataagaccttt 177
           |||||| ||||||| ||||||||||||||
Sbjct: 273 ctccctctgtaaactaatataagaccttt 245



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 290     cattatacctgcagcaaaccc 310
               |||||||||||||||||||||
Sbjct: 2068162 cattatacctgcagcaaaccc 2068142
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>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence
          Length = 187012

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 149   ctccctgtgtaaacaaatataagaccttt 177
             |||||| ||||||| ||||||||||||||
Sbjct: 47497 ctccctctgtaaactaatataagaccttt 47525



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 150   tccctgtgtaaacaaatataagaccttt 177
             ||||| ||||||| ||||||||||||||
Sbjct: 47575 tccctctgtaaactaatataagaccttt 47548
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>gb|AF458278.1| Triticum monococcum isolate Tm13010 rga2 protein (rga2) gene,
           partial cds
          Length = 1439

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 150 tccctgtgtaaacaaatataagaccttt 177
           ||||| ||||||| ||||||||||||||
Sbjct: 195 tccctctgtaaactaatataagaccttt 222
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>dbj|AK138355.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230077E04 product:unclassifiable, full
            insert sequence
          Length = 4014

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   tttctgtacatggaaagtga 69
            ||||||||||||||||||||
Sbjct: 1805 tttctgtacatggaaagtga 1786
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>gb|AC055813.9| Homo sapiens chromosome 17, clone RP11-209M4, complete sequence
          Length = 80117

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 111   tcctagtatacaatcatggcacta 134
             |||||||||||||||| |||||||
Sbjct: 29692 tcctagtatacaatcagggcacta 29669
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>emb|AL808146.3| Mouse DNA sequence from clone RP23-52L10 on chromosome X, complete
             sequence
          Length = 159820

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    tttctgtacatggaaagtga 69
             ||||||||||||||||||||
Sbjct: 37731 tttctgtacatggaaagtga 37712


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,463,213
Number of Sequences: 3902068
Number of extensions: 2463213
Number of successful extensions: 43355
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43312
Number of HSP's gapped (non-prelim): 43
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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