ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags28c18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB032840.1| Hordeum vulgare HVA/68 mRNA for vacuolar proton-ATPase, complete cds Length = 2281 Score = 805 bits (406), Expect = 0.0 Identities = 422/430 (98%) Strand = Plus / Minus Query: 5 ttacaacaaataatggtacacatggggaaaaataatggcttgcatcctggcgctggagac 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2165 ttacaacaaataatggtacacatggggaaaaataatggcttgcatcctggcgctggagac 2106 Query: 65 caaataatgtaaaatcctgaaaaaacaaggctgtctgtctgtcgcnnnnnnnggggatcc 124 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2105 caaataatgtaaaatcctgaaaaaacaaggctgtctgtctgtcgcaaaaaaaggggatcc 2046 Query: 125 tgaaacgtaattcgcatctacacaaactctggtgaagcaaaagcaaattgctcgcaagtc 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2045 tgaaacgtaattcgcatctacacaaactctggtgaagcaaaagcaaattgctcgcaagtc 1986 Query: 185 gttcacagcatttggtgctccttattgtttacacggtggccatacacaacgtttcttctt 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1985 gttcacagcatttggtgctccttattgtttacacggtggccatacacaacgtttcttctt 1926 Query: 245 tcttttacctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataact 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1925 tcttttacctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataact 1866 Query: 305 tctggaatttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggata 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1865 tctggaatttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggata 1806 Query: 365 caaggcggtaaaatagatcacccatgcgactctttacgacggcgtangttatcttgtgtc 424 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1805 caaggcggtaaaatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtc 1746 Query: 425 catcagcatt 434 |||||||||| Sbjct: 1745 catcagcatt 1736
>gb|U36939.1|HVU36939 Hordeum vulgare vacuolar ATPase catalytic subunit mRNA, partial cds Length = 2089 Score = 789 bits (398), Expect = 0.0 Identities = 420/430 (97%) Strand = Plus / Minus Query: 5 ttacaacaaataatggtacacatggggaaaaataatggcttgcatcctggcgctggagac 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1988 ttacaacaaataatggtacacatggggaaaaataatggcttgcatcctggcgctggagac 1929 Query: 65 caaataatgtaaaatcctgaaaaaacaaggctgtctgtctgtcgcnnnnnnnggggatcc 124 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1928 caaataatgtaaaatcctgaaaaaacaaggctgtctgtctgtcgcaaaaaaaggggatcc 1869 Query: 125 tgaaacgtaattcgcatctacacaaactctggtgaagcaaaagcaaattgctcgcaagtc 184 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1868 tgaaacgtaattcgcatctacacaaactccggtgaagcaaaagcaaattgctcgcaagtc 1809 Query: 185 gttcacagcatttggtgctccttattgtttacacggtggccatacacaacgtttcttctt 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1808 gttcacagcatttggtgctccttattgtttacacggtggccatacacaacgtttcttctt 1749 Query: 245 tcttttacctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataact 304 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1748 tcttttacctagcctcgtcttctaggttgcggaacccggctgtaaggtcgtcgtataact 1689 Query: 305 tctggaatttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggata 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1688 tctggaatttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggata 1629 Query: 365 caaggcggtaaaatagatcacccatgcgactctttacgacggcgtangttatcttgtgtc 424 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1628 caaggcggtaaaatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtc 1569 Query: 425 catcagcatt 434 |||||||||| Sbjct: 1568 catcagcatt 1559
>gb|DQ432014.1| Triticum aestivum vacuolar proton-ATPase subunit A mRNA, complete cds Length = 2358 Score = 502 bits (253), Expect = e-139 Identities = 306/322 (95%), Gaps = 4/322 (1%) Strand = Plus / Minus Query: 117 ggggatcctgaaacgtaattcgcatctacacaaactctggtgaagcaaaa-gcaaattgc 175 |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 2112 gggggtcctgaaacgtaattcgcatctacacaaactccggtgaagcaaaaagcaaattgc 2053 Query: 176 tcgcaagtcgttcacagcatttggtgctccttattgtttacacggtggccatacacaacg 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2052 tcgcaagtcgttcacagcatttggtgctccttattgtttacacggtggccatacacaatg 1993 Query: 236 tttcttctttc---ttttacctagcctcgtcttctaggttgcggaacccggcggtaaggt 292 |||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 1992 tttcttctctccttttttacctagcctcgtcttctaggttgcggaacccggtggtgaggt 1933 Query: 293 cgtcgtataacttctggaatttcgcgacaaggacgtcttcgccttctgcggggtcttcga 352 ||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 1932 cgtcgtacaacttctggaattttgcgattaggacgtcttcgccttctgcggggtcttcga 1873 Query: 353 acttttgggatacaaggcggtaaaatagatcacccatgcgactctttacgacggcgtang 412 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct: 1872 acttttgggatacaaggcggtaaaatagatcgcccatgcgactctttacgacggcgtagg 1813 Query: 413 ttatcttgtgtccatcagcatt 434 |||||||||||||||||||||| Sbjct: 1812 ttatcttgtgtccatcagcatt 1791 Score = 129 bits (65), Expect = 8e-27 Identities = 99/107 (92%), Gaps = 5/107 (4%) Strand = Plus / Minus Query: 6 tacaacaaataatggtacacatggggaaaaa-taatggcttgcatcctggcgctggagac 64 |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| Sbjct: 2240 tacaacaaataatggtacacatggtgaaaaaataatggcgtgcatcctggcgctggagac 2181 Query: 65 caaataatgt-aaaatcct---gaaaaaacaaggctgtctgtctgtc 107 |||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 2180 caaacaatgtaaaaatcctggggaaaaaacaaggctgtctgtctgtc 2134
>dbj|AK061925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C02, full insert sequence Length = 1001 Score = 129 bits (65), Expect = 8e-27 Identities = 157/188 (83%) Strand = Plus / Minus Query: 251 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 310 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 710 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 651 Query: 311 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggc 370 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| ||||| |||| Sbjct: 650 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttgagatactaggc 591 Query: 371 ggtaaaatagatcacccatgcgactctttacgacggcgtangttatcttgtgtccatcag 430 | ||||||||||||||||| ||| ||||| ||| ||| ||||| || |||||||||| Sbjct: 590 gataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtccatcag 531 Query: 431 cattagct 438 |||||||| Sbjct: 530 cattagct 523
>dbj|AK069821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L13, full insert sequence Length = 2315 Score = 129 bits (65), Expect = 8e-27 Identities = 157/188 (83%) Strand = Plus / Minus Query: 251 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 310 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 2009 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 1950 Query: 311 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggc 370 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| ||||| |||| Sbjct: 1949 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttgagatactaggc 1890 Query: 371 ggtaaaatagatcacccatgcgactctttacgacggcgtangttatcttgtgtccatcag 430 | ||||||||||||||||| ||| ||||| ||| ||| ||||| || |||||||||| Sbjct: 1889 gataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtccatcag 1830 Query: 431 cattagct 438 |||||||| Sbjct: 1829 cattagct 1822
>dbj|AK067063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089J10, full insert sequence Length = 2295 Score = 109 bits (55), Expect = 8e-21 Identities = 144/174 (82%) Strand = Plus / Minus Query: 259 tcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttcgcg 318 ||||||||||| ||||||||||||||||||||||| ||||| | |||||| |||||||| Sbjct: 1955 tcgtcttctagattgcggaacccggcggtaaggtcatcgtacagcttctgaaatttcgca 1896 Query: 319 acaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaaaat 378 | | || |||| ||| |||||||| || ||||| ||||| || || |||||||| ||| Sbjct: 1895 atcaaaacttctttgccctctgcgggatcctcgaatttttgcgacactaggcggtagaat 1836 Query: 379 agatcacccatgcgactctttacgacggcgtangttatcttgtgtccatcagca 432 ||||| ||||||||| ||||| ||| ||| || ||||| |||||||||||| Sbjct: 1835 agatcgcccatgcgatgctttatgacactgtatgtaatcttctgtccatcagca 1782
>gb|AY104754.1| Zea mays PCO134411 mRNA sequence Length = 2254 Score = 89.7 bits (45), Expect = 7e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 256 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 315 ||||| |||||||||||||||||||| | ||||||||||||||| | |||| || || Sbjct: 1956 gcctcatcttctaggttgcggaacccagtggtaaggtcgtcgtacagtttcttaaacttg 1897 Query: 316 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 375 |||| | | |||||||||||||| || || ||||||||||||||||| ||||| ||| Sbjct: 1896 ccgaccaaagcttcttcgccttctgcaggatcctcgaacttttgggatactaggcgataa 1837 Query: 376 aatagatcaccca 388 |||||||| |||| Sbjct: 1836 aatagatccccca 1824
>gb|U36436.1|ZMU36436 Zea mays vacuolar ATPase 69 kDa subunit mRNA, partial cds Length = 2000 Score = 81.8 bits (41), Expect = 2e-12 Identities = 110/133 (82%) Strand = Plus / Minus Query: 256 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 315 ||||| |||||||||||||||||||| | ||||||||||||||| | |||| || || Sbjct: 1679 gcctcatcttctaggttgcggaacccagtggtaaggtcgtcgtacagtttcttaaacttg 1620 Query: 316 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 375 |||| | | ||||| |||||||| || || ||||||||||||||||| ||||| ||| Sbjct: 1619 ccgaccaaagcttcttcaccttctgcaggatcctcgaacttttgggatactaggcgataa 1560 Query: 376 aatagatcaccca 388 |||||||| |||| Sbjct: 1559 aatagatccccca 1547
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 259 tcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttcgc 317 ||||||||||| ||||||||||||||||||||||| ||||| | |||||| |||||||| Sbjct: 4127190 tcgtcttctagattgcggaacccggcggtaaggtcatcgtacagcttctgaaatttcgc 4127132 Score = 46.1 bits (23), Expect = 0.095 Identities = 55/66 (83%) Strand = Plus / Minus Query: 367 aggcggtaaaatagatcacccatgcgactctttacgacggcgtangttatcttgtgtcca 426 |||||||| |||||||| ||||||||| ||||| ||| ||| || ||||| |||||| Sbjct: 4126997 aggcggtagaatagatcgcccatgcgatgctttatgacactgtatgtaatcttctgtcca 4126938 Query: 427 tcagca 432 |||||| Sbjct: 4126937 tcagca 4126932
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 259 tcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttcgc 317 ||||||||||| ||||||||||||||||||||||| ||||| | |||||| |||||||| Sbjct: 37204 tcgtcttctagattgcggaacccggcggtaaggtcatcgtacagcttctgaaatttcgc 37146 Score = 46.1 bits (23), Expect = 0.095 Identities = 55/66 (83%) Strand = Plus / Minus Query: 367 aggcggtaaaatagatcacccatgcgactctttacgacggcgtangttatcttgtgtcca 426 |||||||| |||||||| ||||||||| ||||| ||| ||| || ||||| |||||| Sbjct: 37011 aggcggtagaatagatcgcccatgcgatgctttatgacactgtatgtaatcttctgtcca 36952 Query: 427 tcagca 432 |||||| Sbjct: 36951 tcagca 36946
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 73.8 bits (37), Expect = 4e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 251 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 310 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 26902973 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 26903032 Query: 311 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttg 359 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct: 26903033 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttg 26903081 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 367 aggcggtaaaatagatcacccatgcgactctttacgacggcgtangttatcttgtgtcca 426 ||||| ||||||||||||||||| ||| ||||| ||| ||| ||||| || |||||| Sbjct: 26903185 aggcgataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtcca 26903244 Query: 427 tcagcattagct 438 |||||||||||| Sbjct: 26903245 tcagcattagct 26903256
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 73.8 bits (37), Expect = 4e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 251 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 310 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 26734 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 26793 Query: 311 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttg 359 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct: 26794 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttg 26842 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 367 aggcggtaaaatagatcacccatgcgactctttacgacggcgtangttatcttgtgtcca 426 ||||| ||||||||||||||||| ||| ||||| ||| ||| ||||| || |||||| Sbjct: 26946 aggcgataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtcca 27005 Query: 427 tcagcattagct 438 |||||||||||| Sbjct: 27006 tcagcattagct 27017
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 73.8 bits (37), Expect = 4e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 251 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 310 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 157599 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 157658 Query: 311 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttg 359 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct: 157659 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttg 157707 Score = 58.0 bits (29), Expect = 3e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 367 aggcggtaaaatagatcacccatgcgactctttacgacggcgtangttatcttgtgtcca 426 ||||| ||||||||||||||||| ||| ||||| ||| ||| ||||| || |||||| Sbjct: 157811 aggcgataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtcca 157870 Query: 427 tcagcattagct 438 |||||||||||| Sbjct: 157871 tcagcattagct 157882
>gb|BT024092.1| Zea mays clone EL01N0551D01 mRNA sequence Length = 2273 Score = 73.8 bits (37), Expect = 4e-10 Identities = 109/133 (81%) Strand = Plus / Minus Query: 256 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 315 ||||| |||||||||||||||||||| | |||||||||||| || | |||| || || Sbjct: 1967 gcctcatcttctaggttgcggaacccagtggtaaggtcgtcatacagtttcttaaacttg 1908 Query: 316 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 375 |||| | | |||||||||||||| || || || |||||||||||||| ||||| ||| Sbjct: 1907 ccgaccaaagcttcttcgccttctgcaggatcctcaaacttttgggatactaggcgataa 1848 Query: 376 aatagatcaccca 388 |||||||| |||| Sbjct: 1847 aatagatccccca 1835
>dbj|AB189964.1| Pyrus communis PcVHA-A2 mRNA for vacuolar H+-ATPase catalytic subunit, complete cds Length = 2322 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 328 tcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaaaatagatcaccc 387 ||||| |||||||| || || || ||||||||||| || ||||||||||| ||||| ||| Sbjct: 1947 tcttccccttctgccggatcctcaaacttttgggacactaggcggtaaaagagatctccc 1888 Query: 388 a 388 | Sbjct: 1887 a 1887
>gb|AC097529.2| Homo sapiens BAC clone RP11-669F3 from 4, complete sequence Length = 54264 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 68 ataatgtaaaatcctgaaaaaa 89 |||||||||||||||||||||| Sbjct: 28728 ataatgtaaaatcctgaaaaaa 28707
>emb|AL589684.7| Human DNA sequence from clone RP11-437J19 on chromosome 6 Contains a novel gene, complete sequence Length = 94555 Score = 42.1 bits (21), Expect = 1.5 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 10 acaaataatggtacacatggggaaaaataatgg 42 ||||||||||||| |||||| |||||||||||| Sbjct: 50582 acaaataatggta-acatggagaaaaataatgg 50613
>gb|AF367445.1| Prunus persica clone AtpvA1 V-ATPase catalytic subunit A (atpvA1) mRNA, complete cds Length = 2336 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 328 tcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaaaatagatcaccc 387 ||||| |||||||| || || || || ||||| || |||||||||||||| ||||| ||| Sbjct: 1929 tcttccccttctgccggatcctcaaatttttgtgacacaaggcggtaaaagagatctccc 1870 Query: 388 a 388 | Sbjct: 1869 a 1869
>emb|AJ276326.1|MCR276326 Mesembryanthemum crystallinum mRNA for putative vacuolar ATP synthase subunit A (vatA gene) Length = 2396 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 295 tcgtataacttctggaatttcgcgacaaggacgtcttcgccttctgcggggtcttcgaac 354 ||||| |||||||||||||| ||||| || |||||| ||||| || ||||| ||||| Sbjct: 1980 tcgtacaacttctggaattttgcgacgagagtgtcttctccttcagcagggtcctcgaat 1921 Query: 355 ttttg 359 ||||| Sbjct: 1920 ttttg 1916
>gb|AC147771.1| Homo sapiens chromosome 16 clone PCR-16A03, complete sequence Length = 8715 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aacaaataatggtacacatg 28 |||||||||||||||||||| Sbjct: 4345 aacaaataatggtacacatg 4326
>gb|AC107770.10| Mus musculus chromosome 5, clone RP23-114M24, complete sequence Length = 191762 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 acatggggaaaaataatggc 43 |||||||||||||||||||| Sbjct: 108085 acatggggaaaaataatggc 108066
>gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p, complete sequence Length = 167559 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ggtacacatggggaaaaata 38 |||||||||||||||||||| Sbjct: 135620 ggtacacatggggaaaaata 135601
>gb|AF098501.2| Caenorhabditis elegans fosmid H28G03, complete sequence Length = 44352 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gcttgcatcctggcgctgga 61 |||||||||||||||||||| Sbjct: 18371 gcttgcatcctggcgctgga 18352
>emb|X07160.1|GMHSP185 Soybean gene for heat shock protein Gmhsp18.5-C (class I) Length = 1833 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ctctggtgaagcaaaagcaaattg 174 ||||||| |||||||||||||||| Sbjct: 1377 ctctggttaagcaaaagcaaattg 1400
>emb|CR391627.1| Gallus gallus finished cDNA, clone ChEST893o3 Length = 1074 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 aaaacaaggctgtctgtctg 105 |||||||||||||||||||| Sbjct: 747 aaaacaaggctgtctgtctg 728
>ref|NM_171682.1| Caenorhabditis elegans H28G03.1b (H28G03.1) mRNA, complete cds Length = 948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gcttgcatcctggcgctgga 61 |||||||||||||||||||| Sbjct: 445 gcttgcatcctggcgctgga 426
>ref|NM_171950.3| Caenorhabditis elegans H28G03.1c (H28G03.1) mRNA, complete cds Length = 2116 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gcttgcatcctggcgctgga 61 |||||||||||||||||||| Sbjct: 534 gcttgcatcctggcgctgga 515
>ref|NM_171681.2| Caenorhabditis elegans H28G03.1a (H28G03.1) mRNA, complete cds Length = 1046 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gcttgcatcctggcgctgga 61 |||||||||||||||||||| Sbjct: 543 gcttgcatcctggcgctgga 524
>dbj|AB189963.1| Pyrus communis PcVHA-A1 mRNA for vacuolar H+-ATPase catalytic subunit, complete cds Length = 2236 Score = 40.1 bits (20), Expect = 5.9 Identities = 80/100 (80%) Strand = Plus / Minus Query: 289 aggtcgtcgtataacttctggaatttcgcgacaaggacgtcttcgccttctgcggggtct 348 ||||| ||||||| ||||| ||||| || ||||| | ||||| ||||| || || || Sbjct: 1901 aggtcctcgtatagcttcttaaattttgccacaagagcttcttccccttcagccggatcc 1842 Query: 349 tcgaacttttgggatacaaggcggtaaaatagatcaccca 388 || |||||||| || || ||||||||||| ||||| |||| Sbjct: 1841 tcaaacttttgagacactaggcggtaaaagagatctccca 1802 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,351,206 Number of Sequences: 3902068 Number of extensions: 4351206 Number of successful extensions: 98490 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 98366 Number of HSP's gapped (non-prelim): 118 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
