| Clone Name | rbags27n18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473375.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 464 bits (234), Expect = e-127 Identities = 471/548 (85%), Gaps = 3/548 (0%) Strand = Plus / Minus Query: 150 tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 209 |||||| |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||||| Sbjct: 1389 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 1330 Query: 210 gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 269 || ||| ||| |||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 1329 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 1270 Query: 270 cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 329 || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| || Sbjct: 1269 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 1210 Query: 330 tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtga 389 |||||| ||||| ||||||||||| || | |||| || |||||||| |||||||| || Sbjct: 1209 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcga 1150 Query: 390 ttccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttc 449 ||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||||| Sbjct: 1149 ttccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttc 1090 Query: 450 cagataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tg 506 ||| |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| | Sbjct: 1089 caggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcg 1030 Query: 507 ttcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccaca 566 | |||| ||||||||||| ||||||||||||||||||||||||| |||||| | |||| Sbjct: 1029 tcccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacc 970 Query: 567 tcttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 626 ||||||||||||| ||||| || |||||||||||| ||||||||| ||||||||||| Sbjct: 969 tcttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 910 Query: 627 ggatgcgactcccttcagcactaaataccggngcaagtacttaatcggtgctgtccgggc 686 || ||||||||||| ||||||||||||||| | |||||||| || || ||||||| ||| Sbjct: 909 agacgcgactcccttgagcactaaataccggtgtaagtacttgattggcgctgtcctggc 850 Query: 687 aatctctt 694 |||||||| Sbjct: 849 aatctctt 842
>dbj|AK068610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155A07, full insert sequence Length = 1837 Score = 464 bits (234), Expect = e-127 Identities = 471/548 (85%), Gaps = 3/548 (0%) Strand = Plus / Minus Query: 150 tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 209 |||||| |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||||| Sbjct: 1581 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 1522 Query: 210 gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 269 || ||| ||| |||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 1521 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 1462 Query: 270 cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 329 || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| || Sbjct: 1461 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 1402 Query: 330 tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtga 389 |||||| ||||| ||||||||||| || | |||| || |||||||| |||||||| || Sbjct: 1401 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcga 1342 Query: 390 ttccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttc 449 ||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||||| Sbjct: 1341 ttccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttc 1282 Query: 450 cagataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tg 506 ||| |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| | Sbjct: 1281 caggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcg 1222 Query: 507 ttcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccaca 566 | |||| ||||||||||| ||||||||||||||||||||||||| |||||| | |||| Sbjct: 1221 tcccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacc 1162 Query: 567 tcttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 626 ||||||||||||| ||||| || |||||||||||| ||||||||| ||||||||||| Sbjct: 1161 tcttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 1102 Query: 627 ggatgcgactcccttcagcactaaataccggngcaagtacttaatcggtgctgtccgggc 686 || ||||||||||| ||||||||||||||| | |||||||| || || ||||||| ||| Sbjct: 1101 agacgcgactcccttgagcactaaataccggtgtaagtacttgattggcgctgtcctggc 1042 Query: 687 aatctctt 694 |||||||| Sbjct: 1041 aatctctt 1034
>gb|AY224498.1| Oryza sativa (japonica cultivar-group) isolate 31120 putative serine protease-like protein mRNA, partial cds Length = 910 Score = 460 bits (232), Expect = e-126 Identities = 469/546 (85%), Gaps = 3/546 (0%) Strand = Plus / Minus Query: 152 agttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcacttga 211 |||| |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||||||| Sbjct: 910 agttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcacttga 851 Query: 212 cgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagcaca 271 ||| ||| |||||||||||| || || |||||||| |||||||||||||||||||| | Sbjct: 850 tgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagcaga 791 Query: 272 gtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactgatt 331 | ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| |||| Sbjct: 790 gcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccgatt 731 Query: 332 tcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtgatt 391 |||| ||||| ||||||||||| || | |||| || |||||||| |||||||| |||| Sbjct: 730 tcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcgatt 671 Query: 392 ccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttcca 451 ||||||||| ||||||||||||||||||||||| || ||||| || ||||||||||||| Sbjct: 670 ccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttcca 611 Query: 452 gataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tgtt 508 | |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| || Sbjct: 610 ggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtc 551 Query: 509 cctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatc 568 |||| ||||||||||| ||||||||||||||||||||||||| |||||| | |||| || Sbjct: 550 ccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctc 491 Query: 569 ttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttggg 628 ||||||||||| ||||| || |||||||||||| ||||||||| ||||||||||| | Sbjct: 490 ttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttgag 431 Query: 629 atgcgactcccttcagcactaaataccggngcaagtacttaatcggtgctgtccgggcaa 688 | ||||||||||| ||||||||||||||| | |||||||| || || ||||||| ||||| Sbjct: 430 acgcgactcccttgagcactaaataccggtgtaagtacttgattggcgctgtcctggcaa 371 Query: 689 tctctt 694 |||||| Sbjct: 370 tctctt 365
>gb|AY110353.1| Zea mays CL9084_1 mRNA sequence Length = 668 Score = 387 bits (195), Expect = e-104 Identities = 371/432 (85%) Strand = Plus / Plus Query: 148 aatcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcac 207 |||||||||||||||||||||||| |||| ||||| |||||||| |||| ||||||||| Sbjct: 228 aatcagttctctgcaatgggaaaggctgatccaattttgttgttccccaatcggtagcac 287 Query: 208 ttgacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaag 267 ||||||||||| ||||||||||||||||||| |||||||| |||||||| | | Sbjct: 288 ttgacgttcacactgtacgggccaatatcgacgcggttatcttcccctccaacnnnnnng 347 Query: 268 cacagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatact 327 |||| ||||||||||| | ||| |||||||| || || |||||||| | ||| |||||| Sbjct: 348 cacaacgtgtagagtgcaacctcaaactcaggactgacgccaatcaacgtgctggatact 407 Query: 328 gatttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggt 387 ||||||||||| |||||||||||||| || || ||||| | ||| |||| |||||||| Sbjct: 408 gatttcagcacgccatgccactcaaactgaacagtcagcagctgtatctctgaatcaggc 467 Query: 388 gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 447 ||||| ||||| || ||||| ||||| ||||||||||| || |||||||||||||||||| Sbjct: 468 gattcaccacggcgccttggaaatatataaccttggtaatccacatttcccttggcttct 527 Query: 448 tccagataaaactgaatccagttatggaatcctgagacctcggtctctccttgtctctgt 507 ||||| ||||||||||||||||||||||| ||||| ||||| |||| ||||| | | || Sbjct: 528 tccaggtaaaactgaatccagttatggaagcctgatacctcactctccccttgnccccgt 587 Query: 508 tcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacat 567 | || |||||||||||||||||||||||||| |||||||||||||||||||| |||| | Sbjct: 588 cctttgatctcaccaacaaacacatgctcaaaggcagaagagcagctagagttgccacct 647 Query: 568 cttccatacaaa 579 |||||||||||| Sbjct: 648 cttccatacaaa 659
>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence Length = 140449 Score = 200 bits (101), Expect = 4e-48 Identities = 206/239 (86%), Gaps = 3/239 (1%) Strand = Plus / Minus Query: 459 ctgaatccagttatggaatcctgagacctcggtctctccttgtc-tct--gttcctttat 515 ||||||||| |||||||||||||||||||| ||||||| |||| || || |||| || Sbjct: 110164 ctgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtcccttgat 110105 Query: 516 ctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatcttccata 575 ||||||||| ||||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 110104 ctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctcttccata 110045 Query: 576 caaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttgggatgcgac 635 |||| ||||| || |||||||||||| ||||||||| ||||||||||| || ||||| Sbjct: 110044 caaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttgagacgcgac 109985 Query: 636 tcccttcagcactaaataccggngcaagtacttaatcggtgctgtccgggcaatctctt 694 |||||| ||||||||||||||| | |||||||| || || ||||||| ||||||||||| Sbjct: 109984 tcccttgagcactaaataccggtgtaagtacttgattggcgctgtcctggcaatctctt 109926 Score = 184 bits (93), Expect = 3e-43 Identities = 201/237 (84%) Strand = Plus / Minus Query: 150 tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 209 |||||| |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||||| Sbjct: 110640 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 110581 Query: 210 gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 269 || ||| ||| |||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 110580 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 110521 Query: 270 cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 329 || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| || Sbjct: 110520 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 110461 Query: 330 tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcagg 386 |||||| ||||| ||||||||||| || | |||| || |||||||| |||||||| Sbjct: 110460 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcagg 110404 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 388 gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 447 ||||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||| Sbjct: 110317 gattccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttct 110258 Query: 448 tccagataaaactg 461 ||||| |||||||| Sbjct: 110257 tccaggtaaaactg 110244
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 200 bits (101), Expect = 4e-48 Identities = 206/239 (86%), Gaps = 3/239 (1%) Strand = Plus / Minus Query: 459 ctgaatccagttatggaatcctgagacctcggtctctccttgtc-tct--gttcctttat 515 ||||||||| |||||||||||||||||||| ||||||| |||| || || |||| || Sbjct: 27167521 ctgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtcccttgat 27167462 Query: 516 ctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatcttccata 575 ||||||||| ||||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 27167461 ctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctcttccata 27167402 Query: 576 caaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttgggatgcgac 635 |||| ||||| || |||||||||||| ||||||||| ||||||||||| || ||||| Sbjct: 27167401 caaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttgagacgcgac 27167342 Query: 636 tcccttcagcactaaataccggngcaagtacttaatcggtgctgtccgggcaatctctt 694 |||||| ||||||||||||||| | |||||||| || || ||||||| ||||||||||| Sbjct: 27167341 tcccttgagcactaaataccggtgtaagtacttgattggcgctgtcctggcaatctctt 27167283 Score = 184 bits (93), Expect = 3e-43 Identities = 201/237 (84%) Strand = Plus / Minus Query: 150 tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 209 |||||| |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||||| Sbjct: 27167997 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 27167938 Query: 210 gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 269 || ||| ||| |||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 27167937 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 27167878 Query: 270 cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 329 || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| || Sbjct: 27167877 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 27167818 Query: 330 tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcagg 386 |||||| ||||| ||||||||||| || | |||| || |||||||| |||||||| Sbjct: 27167817 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcagg 27167761 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 388 gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 447 ||||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||| Sbjct: 27167674 gattccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttct 27167615 Query: 448 tccagataaaactg 461 ||||| |||||||| Sbjct: 27167614 tccaggtaaaactg 27167601
>gb|BT000202.1| Arabidopsis thaliana putative serine protease-like protein (At4g17100) mRNA, complete cds Length = 1361 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 409 aatatgtaaccttggtagtcgacatttcccttggcttcttccagataaaactgaatccag 468 ||||| || ||||| || || ||| |||| |||||||| |||| |||||||||| |||| Sbjct: 1046 aatatatagccttgataatctacagttcctttggcttcctccaagtaaaactgaagccag 987 Query: 469 ttatggaatcctgagac 485 ||||||||||| ||||| Sbjct: 986 ttatggaatccagagac 970 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 514 atctcaccaacaaacacatgctcaaatgcagaaga 548 |||||||| ||||| ||||||||||| |||||||| Sbjct: 947 atctcacctacaaagacatgctcaaacgcagaaga 913
>gb|AY093205.1| Arabidopsis thaliana putative serine protease-like protein (At4g17100) mRNA, complete cds Length = 1685 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 409 aatatgtaaccttggtagtcgacatttcccttggcttcttccagataaaactgaatccag 468 ||||| || ||||| || || ||| |||| |||||||| |||| |||||||||| |||| Sbjct: 1191 aatatatagccttgataatctacagttcctttggcttcctccaagtaaaactgaagccag 1132 Query: 469 ttatggaatcctgagac 485 ||||||||||| ||||| Sbjct: 1131 ttatggaatccagagac 1115 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 514 atctcaccaacaaacacatgctcaaatgcagaaga 548 |||||||| ||||| ||||||||||| |||||||| Sbjct: 1092 atctcacctacaaagacatgctcaaacgcagaaga 1058
>gb|AY813710.1| Schistosoma japonicum SJCHGC05913 protein mRNA, complete cds Length = 1480 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Minus Query: 517 tcaccaacaaacacatgctcaaatgcagaaga 548 ||||||||||||||||| || ||||||||||| Sbjct: 1052 tcaccaacaaacacatgttcgaatgcagaaga 1021
>emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 7 Length = 201471 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 514 atctcaccaacaaacacatgctcaaatgcagaaga 548 |||||||| ||||| ||||||||||| |||||||| Sbjct: 173588 atctcacctacaaagacatgctcaaacgcagaaga 173622
>emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 45 Length = 199548 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 514 atctcaccaacaaacacatgctcaaatgcagaaga 548 |||||||| ||||| ||||||||||| |||||||| Sbjct: 159417 atctcacctacaaagacatgctcaaacgcagaaga 159451
>emb|BX813846.1|CNS0ABZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB42ZD09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1706 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 514 atctcaccaacaaacacatgctcaaatgcagaaga 548 |||||||| ||||| ||||||||||| |||||||| Sbjct: 738 atctcacctacaaagacatgctcaaacgcagaaga 772
>ref|XM_783872.1| PREDICTED: Strongylocentrotus purpuratus similar to Placental protein 11 precursor (PP11) (LOC583987), mRNA Length = 960 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 515 tctcaccaacaaacacatgctcaaatgcagaaga 548 ||||||| ||||||||||||||||| ||||||| Sbjct: 538 tctcacctacaaacacatgctcaaacccagaaga 505
>emb|AL645634.6| Human DNA sequence from clone RP11-402L1 on chromosome 10 Contains an adenylyl cyclase-associated protein 1 (CAP 1) pseudogene, a novel zinc finger protein gene (LOC220992), three novel genes, the ZNF32 gene for zinc finger protein 32 (KOX30), the ZNF32OS1 gene for zinc finger protein 32 opposite strand 1, the ZNF32OS2 gene for zinc finger protein 32 opposite strand 2, a ribosomal protein L21 (RPL21) pseudogene and three CpG islands, complete sequence Length = 80106 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 acatttcccttggcttcttcc 450 ||||||||||||||||||||| Sbjct: 71300 acatttcccttggcttcttcc 71320
>gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosome 12, complete sequence Length = 151373 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 495 tccttgtctctgttcctttatctc 518 |||||||||||||| ||||||||| Sbjct: 102066 tccttgtctctgtttctttatctc 102043
>ref|XM_814587.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507023.220) partial mRNA Length = 13521 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 ttcctttatctcaccaacaa 526 |||||||||||||||||||| Sbjct: 13122 ttcctttatctcaccaacaa 13103
>gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complete sequence Length = 205784 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 495 tccttgtctctgttcctttatctc 518 |||||||||||||| ||||||||| Sbjct: 195917 tccttgtctctgtttctttatctc 195940
>ref|XM_805490.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509171.100) partial mRNA Length = 1911 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 ttcctttatctcaccaacaa 526 |||||||||||||||||||| Sbjct: 1512 ttcctttatctcaccaacaa 1493
>ref|XM_662168.1| Cryptosporidium hominis TU502 DNA-directed RNA polymerase II/III subunit (Chro.60382) partial mRNA Length = 5610 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 agttctctgcaatgggaaag 171 |||||||||||||||||||| Sbjct: 122 agttctctgcaatgggaaag 141
>emb|AL845454.6| Human DNA sequence from clone DAQB-90C11 on chromosome 6 Contains HLA-H for major histocompatibility complex, class I, H (pseudogene), HLA-16 pseudogene, HCP5P6 for HLA complex P5 pseudogene 6, HCG4P6 for HLA complex group 4 pseudogene 6, HLA-K for major histocompatibility complex, class I, K, HLA-21 pseudogene, HLA-A for major histocompatibility complex, class I, A, HCP5P3 for HLA complex P5 pseudogene 3, HLA-80 pseudogene, MICD for MHC class I polypeptide-related sequence D, HCG9 for HLA complex group 9, HCP5P2 for HLA complex P5 pseudogene 2, HLA-J for major histocompatibility complex, class I, J (pseudogene), HCG8 for HLA complex group 8, 5' end of C6orf12 for chromosome 6 open reading frame 12 and five CpG islands, complete sequence Length = 159427 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ttgtctctgttcctttatctcacc 521 ||||||||||||||||| |||||| Sbjct: 87524 ttgtctctgttcctttacctcacc 87501
>emb|BX538352.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4 Length = 293050 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 agttctctgcaatgggaaag 171 |||||||||||||||||||| Sbjct: 33590 agttctctgcaatgggaaag 33571
>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the 5' end of the gene for a novel protein (330000P08Rik) (Luc7a), the gene for a novel protein (5530600A18Rik), the Abcc3 gene for ATP-binding cassette sub-family C (CFTR/MRP) member 3, the Cacna1g gene for calcium channel voltage-dependent T type alpha 1G subunit, the 3' end of the Tisp78 gene for transcript increased in spermiogenesis 78 and one CpG island, complete sequence Length = 161978 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 gttaccacatcttccataca 577 |||||||||||||||||||| Sbjct: 85786 gttaccacatcttccataca 85805
>emb|CR759762.5| Human DNA sequence from clone DAMC-190N15 on chromosome 6, complete sequence Length = 40072 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ttgtctctgttcctttatctcacc 521 ||||||||||||||||| |||||| Sbjct: 12922 ttgtctctgttcctttacctcacc 12899
>emb|CR388220.8| Human DNA sequence from clone DADB-123D8 on chromosome 6, complete sequence Length = 131368 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 ttgtctctgttcctttatctcacc 521 ||||||||||||||||| |||||| Sbjct: 113007 ttgtctctgttcctttacctcacc 112984
>gb|AC113348.2| Homo sapiens chromosome 5 clone CTD-2537M22, complete sequence Length = 80723 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 gatgtcagcattgccttgaa 611 |||||||||||||||||||| Sbjct: 16201 gatgtcagcattgccttgaa 16220
>ref|XM_627674.1| Cryptosporidium parvum Iowa II DNA-directed RNA polymerase III C1 subunit (cgd6_3290), partial mRNA Length = 5616 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 agttctctgcaatgggaaag 171 |||||||||||||||||||| Sbjct: 122 agttctctgcaatgggaaag 141
>gb|AF529557.1| Acipenser fulvescens clone AfuG218 microsatellite sequence Length = 458 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 aactgaatccagttatggaa 476 |||||||||||||||||||| Sbjct: 372 aactgaatccagttatggaa 353
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 ttgtctctgttcctttatctcacc 521 ||||||||||||||||| |||||| Sbjct: 1531971 ttgtctctgttcctttacctcacc 1531994
>emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chromosome 2, complete sequence Length = 188464 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 aaagtaaaccaaagggatgt 596 |||||||||||||||||||| Sbjct: 161809 aaagtaaaccaaagggatgt 161828
>gb|AF055066.1|AF055066 Homo sapiens MHC class 1 region Length = 319486 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 ttgtctctgttcctttatctcacc 521 ||||||||||||||||| |||||| Sbjct: 86715 ttgtctctgttcctttacctcacc 86738
>ref|XM_311128.2| Anopheles gambiae str. PEST ENSANGP00000017337 (ENSANGG00000014848), partial mRNA Length = 658 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 tgtagagtgccagctcgaactcag 298 |||||||||||||||||| ||||| Sbjct: 79 tgtagagtgccagctcgagctcag 56
>gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chromosome unknown, complete sequence Length = 153379 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 accaacagtgtaaatctcac 71 |||||||||||||||||||| Sbjct: 22400 accaacagtgtaaatctcac 22381
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 ctcaccaacaaacacatgctcaaa 539 ||||| |||||||||||||||||| Sbjct: 1523477 ctcacaaacaaacacatgctcaaa 1523454
>emb|AJ342601.1|HSA342601 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NA10C Length = 605 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 aagggaaaagataaaaaccg 97 |||||||||||||||||||| Sbjct: 602 aagggaaaagataaaaaccg 583 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,092,401 Number of Sequences: 3902068 Number of extensions: 6092401 Number of successful extensions: 142514 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 142360 Number of HSP's gapped (non-prelim): 151 length of query: 694 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 671 effective length of database: 17,143,297,704 effective search space: 11503152759384 effective search space used: 11503152759384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)