ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27n18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473375.1| Oryza sativa (japonica cultivar-group), predic... 464 e-127
2dbj|AK068610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
3gb|AY224498.1| Oryza sativa (japonica cultivar-group) isolate 31... 460 e-126
4gb|AY110353.1| Zea mays CL9084_1 mRNA sequence 387 e-104
5emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4,... 200 4e-48
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 200 4e-48
7gb|BT000202.1| Arabidopsis thaliana putative serine protease-lik... 58 4e-05
8gb|AY093205.1| Arabidopsis thaliana putative serine protease-lik... 58 4e-05
9gb|AY813710.1| Schistosoma japonicum SJCHGC05913 protein mRNA, c... 48 0.039
10emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA ... 46 0.15
11emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, ... 46 0.15
12emb|BX813846.1|CNS0ABZO Arabidopsis thaliana Full-length cDNA Co... 46 0.15
13ref|XM_783872.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.61
14emb|AL645634.6| Human DNA sequence from clone RP11-402L1 on chro... 42 2.4
15gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosom... 40 9.5
16ref|XM_814587.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.5
17gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complet... 40 9.5
18ref|XM_805490.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.5
19ref|XM_662168.1| Cryptosporidium hominis TU502 DNA-directed RNA ... 40 9.5
20emb|AL845454.6| Human DNA sequence from clone DAQB-90C11 on chro... 40 9.5
21emb|BX538352.1| Cryptosporidium parvum chromosome 6, complete se... 40 9.5
22emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chro... 40 9.5
23emb|CR759762.5| Human DNA sequence from clone DAMC-190N15 on chr... 40 9.5
24emb|CR388220.8| Human DNA sequence from clone DADB-123D8 on chro... 40 9.5
25gb|AC113348.2| Homo sapiens chromosome 5 clone CTD-2537M22, comp... 40 9.5
26ref|XM_627674.1| Cryptosporidium parvum Iowa II DNA-directed RNA... 40 9.5
27gb|AF529557.1| Acipenser fulvescens clone AfuG218 microsatellite... 40 9.5
28dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co... 40 9.5
29emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chr... 40 9.5
30gb|AF055066.1|AF055066 Homo sapiens MHC class 1 region 40 9.5
31ref|XM_311128.2| Anopheles gambiae str. PEST ENSANGP00000017337 ... 40 9.5
32gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chrom... 40 9.5
33emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 9.5
34emb|AJ342601.1|HSA342601 Homo sapiens genomic sequence surroundi... 40 9.5

>ref|XM_473375.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1389

 Score =  464 bits (234), Expect = e-127
 Identities = 471/548 (85%), Gaps = 3/548 (0%)
 Strand = Plus / Minus

                                                                        
Query: 150  tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 209
            |||||| |||||||| |||||  |||||||||| ||| |||| ||||| |||||||||||
Sbjct: 1389 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 1330

                                                                        
Query: 210  gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 269
            || ||| |||  |||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct: 1329 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 1270

                                                                        
Query: 270  cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 329
             || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| ||
Sbjct: 1269 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 1210

                                                                        
Query: 330  tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtga 389
            |||||| ||||| ||||||||||| || |  |||| ||  |||||||| |||||||| ||
Sbjct: 1209 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcga 1150

                                                                        
Query: 390  ttccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttc 449
            |||||||||||  ||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct: 1149 ttccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttc 1090

                                                                        
Query: 450  cagataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tg 506
            ||| |||||||||||||| ||||||||||||||||||||  ||||||| ||| |||   |
Sbjct: 1089 caggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcg 1030

                                                                        
Query: 507  ttcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccaca 566
            | |||| ||||||||||| ||||||||||||||||||||||||| ||||||  | |||| 
Sbjct: 1029 tcccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacc 970

                                                                        
Query: 567  tcttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 626
            |||||||||||||   ||||| || ||||||||||||  ||||||||| |||||||||||
Sbjct: 969  tcttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 910

                                                                        
Query: 627  ggatgcgactcccttcagcactaaataccggngcaagtacttaatcggtgctgtccgggc 686
             || ||||||||||| ||||||||||||||| | |||||||| || || ||||||| |||
Sbjct: 909  agacgcgactcccttgagcactaaataccggtgtaagtacttgattggcgctgtcctggc 850

                    
Query: 687  aatctctt 694
            ||||||||
Sbjct: 849  aatctctt 842



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>dbj|AK068610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155A07, full
            insert sequence
          Length = 1837

 Score =  464 bits (234), Expect = e-127
 Identities = 471/548 (85%), Gaps = 3/548 (0%)
 Strand = Plus / Minus

                                                                        
Query: 150  tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 209
            |||||| |||||||| |||||  |||||||||| ||| |||| ||||| |||||||||||
Sbjct: 1581 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 1522

                                                                        
Query: 210  gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 269
            || ||| |||  |||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct: 1521 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 1462

                                                                        
Query: 270  cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 329
             || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| ||
Sbjct: 1461 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 1402

                                                                        
Query: 330  tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtga 389
            |||||| ||||| ||||||||||| || |  |||| ||  |||||||| |||||||| ||
Sbjct: 1401 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcga 1342

                                                                        
Query: 390  ttccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttc 449
            |||||||||||  ||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct: 1341 ttccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttc 1282

                                                                        
Query: 450  cagataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tg 506
            ||| |||||||||||||| ||||||||||||||||||||  ||||||| ||| |||   |
Sbjct: 1281 caggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcg 1222

                                                                        
Query: 507  ttcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccaca 566
            | |||| ||||||||||| ||||||||||||||||||||||||| ||||||  | |||| 
Sbjct: 1221 tcccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacc 1162

                                                                        
Query: 567  tcttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 626
            |||||||||||||   ||||| || ||||||||||||  ||||||||| |||||||||||
Sbjct: 1161 tcttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 1102

                                                                        
Query: 627  ggatgcgactcccttcagcactaaataccggngcaagtacttaatcggtgctgtccgggc 686
             || ||||||||||| ||||||||||||||| | |||||||| || || ||||||| |||
Sbjct: 1101 agacgcgactcccttgagcactaaataccggtgtaagtacttgattggcgctgtcctggc 1042

                    
Query: 687  aatctctt 694
            ||||||||
Sbjct: 1041 aatctctt 1034



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>gb|AY224498.1| Oryza sativa (japonica cultivar-group) isolate 31120 putative
           serine protease-like protein mRNA, partial cds
          Length = 910

 Score =  460 bits (232), Expect = e-126
 Identities = 469/546 (85%), Gaps = 3/546 (0%)
 Strand = Plus / Minus

                                                                       
Query: 152 agttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcacttga 211
           |||| |||||||| |||||  |||||||||| ||| |||| ||||| |||||||||||||
Sbjct: 910 agttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcacttga 851

                                                                       
Query: 212 cgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagcaca 271
            ||| |||  |||||||||||| || || |||||||| |||||||||||||||||||| |
Sbjct: 850 tgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagcaga 791

                                                                       
Query: 272 gtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactgatt 331
           | ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| ||||
Sbjct: 790 gcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccgatt 731

                                                                       
Query: 332 tcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtgatt 391
           |||| ||||| ||||||||||| || |  |||| ||  |||||||| |||||||| ||||
Sbjct: 730 tcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcgatt 671

                                                                       
Query: 392 ccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttcca 451
           |||||||||  ||||||||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 670 ccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttcca 611

                                                                       
Query: 452 gataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tgtt 508
           | |||||||||||||| ||||||||||||||||||||  ||||||| ||| |||   || 
Sbjct: 610 ggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtc 551

                                                                       
Query: 509 cctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatc 568
           |||| ||||||||||| ||||||||||||||||||||||||| ||||||  | |||| ||
Sbjct: 550 ccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctc 491

                                                                       
Query: 569 ttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttggg 628
           |||||||||||   ||||| || ||||||||||||  ||||||||| ||||||||||| |
Sbjct: 490 ttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttgag 431

                                                                       
Query: 629 atgcgactcccttcagcactaaataccggngcaagtacttaatcggtgctgtccgggcaa 688
           | ||||||||||| ||||||||||||||| | |||||||| || || ||||||| |||||
Sbjct: 430 acgcgactcccttgagcactaaataccggtgtaagtacttgattggcgctgtcctggcaa 371

                 
Query: 689 tctctt 694
           ||||||
Sbjct: 370 tctctt 365



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>gb|AY110353.1| Zea mays CL9084_1 mRNA sequence
          Length = 668

 Score =  387 bits (195), Expect = e-104
 Identities = 371/432 (85%)
 Strand = Plus / Plus

                                                                       
Query: 148 aatcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcac 207
           |||||||||||||||||||||||| |||| ||||| |||||||| ||||  |||||||||
Sbjct: 228 aatcagttctctgcaatgggaaaggctgatccaattttgttgttccccaatcggtagcac 287

                                                                       
Query: 208 ttgacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaag 267
           |||||||||||  ||||||||||||||||||| |||||||| |||||||| |       |
Sbjct: 288 ttgacgttcacactgtacgggccaatatcgacgcggttatcttcccctccaacnnnnnng 347

                                                                       
Query: 268 cacagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatact 327
           ||||  ||||||||||| | ||| |||||||| || || |||||||| | ||| ||||||
Sbjct: 348 cacaacgtgtagagtgcaacctcaaactcaggactgacgccaatcaacgtgctggatact 407

                                                                       
Query: 328 gatttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggt 387
           ||||||||||| |||||||||||||| || || ||||| |  ||| |||| |||||||| 
Sbjct: 408 gatttcagcacgccatgccactcaaactgaacagtcagcagctgtatctctgaatcaggc 467

                                                                       
Query: 388 gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 447
           ||||| ||||| || ||||| ||||| ||||||||||| || ||||||||||||||||||
Sbjct: 468 gattcaccacggcgccttggaaatatataaccttggtaatccacatttcccttggcttct 527

                                                                       
Query: 448 tccagataaaactgaatccagttatggaatcctgagacctcggtctctccttgtctctgt 507
           ||||| ||||||||||||||||||||||| ||||| |||||  |||| ||||| | | ||
Sbjct: 528 tccaggtaaaactgaatccagttatggaagcctgatacctcactctccccttgnccccgt 587

                                                                       
Query: 508 tcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacat 567
            | || |||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct: 588 cctttgatctcaccaacaaacacatgctcaaaggcagaagagcagctagagttgccacct 647

                       
Query: 568 cttccatacaaa 579
           ||||||||||||
Sbjct: 648 cttccatacaaa 659



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>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08,
              complete sequence
          Length = 140449

 Score =  200 bits (101), Expect = 4e-48
 Identities = 206/239 (86%), Gaps = 3/239 (1%)
 Strand = Plus / Minus

                                                                          
Query: 459    ctgaatccagttatggaatcctgagacctcggtctctccttgtc-tct--gttcctttat 515
              ||||||||| ||||||||||||||||||||  ||||||| |||| ||   || |||| ||
Sbjct: 110164 ctgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtcccttgat 110105

                                                                          
Query: 516    ctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatcttccata 575
              ||||||||| ||||||||||||||||||||||||| ||||||  | |||| |||||||||
Sbjct: 110104 ctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctcttccata 110045

                                                                          
Query: 576    caaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttgggatgcgac 635
              ||||   ||||| || ||||||||||||  ||||||||| ||||||||||| || |||||
Sbjct: 110044 caaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttgagacgcgac 109985

                                                                         
Query: 636    tcccttcagcactaaataccggngcaagtacttaatcggtgctgtccgggcaatctctt 694
              |||||| ||||||||||||||| | |||||||| || || ||||||| |||||||||||
Sbjct: 109984 tcccttgagcactaaataccggtgtaagtacttgattggcgctgtcctggcaatctctt 109926



 Score =  184 bits (93), Expect = 3e-43
 Identities = 201/237 (84%)
 Strand = Plus / Minus

                                                                          
Query: 150    tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 209
              |||||| |||||||| |||||  |||||||||| ||| |||| ||||| |||||||||||
Sbjct: 110640 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 110581

                                                                          
Query: 210    gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 269
              || ||| |||  |||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct: 110580 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 110521

                                                                          
Query: 270    cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 329
               || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| ||
Sbjct: 110520 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 110461

                                                                       
Query: 330    tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcagg 386
              |||||| ||||| ||||||||||| || |  |||| ||  |||||||| ||||||||
Sbjct: 110460 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcagg 110404



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                          
Query: 388    gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 447
              |||||||||||||  ||||||||||||||||||||||| || ||||| || |||||||||
Sbjct: 110317 gattccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttct 110258

                            
Query: 448    tccagataaaactg 461
              ||||| ||||||||
Sbjct: 110257 tccaggtaaaactg 110244



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  200 bits (101), Expect = 4e-48
 Identities = 206/239 (86%), Gaps = 3/239 (1%)
 Strand = Plus / Minus

                                                                            
Query: 459      ctgaatccagttatggaatcctgagacctcggtctctccttgtc-tct--gttcctttat 515
                ||||||||| ||||||||||||||||||||  ||||||| |||| ||   || |||| ||
Sbjct: 27167521 ctgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtcccttgat 27167462

                                                                            
Query: 516      ctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatcttccata 575
                ||||||||| ||||||||||||||||||||||||| ||||||  | |||| |||||||||
Sbjct: 27167461 ctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctcttccata 27167402

                                                                            
Query: 576      caaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttgggatgcgac 635
                ||||   ||||| || ||||||||||||  ||||||||| ||||||||||| || |||||
Sbjct: 27167401 caaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttgagacgcgac 27167342

                                                                           
Query: 636      tcccttcagcactaaataccggngcaagtacttaatcggtgctgtccgggcaatctctt 694
                |||||| ||||||||||||||| | |||||||| || || ||||||| |||||||||||
Sbjct: 27167341 tcccttgagcactaaataccggtgtaagtacttgattggcgctgtcctggcaatctctt 27167283



 Score =  184 bits (93), Expect = 3e-43
 Identities = 201/237 (84%)
 Strand = Plus / Minus

                                                                            
Query: 150      tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 209
                |||||| |||||||| |||||  |||||||||| ||| |||| ||||| |||||||||||
Sbjct: 27167997 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 27167938

                                                                            
Query: 210      gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 269
                || ||| |||  |||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct: 27167937 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 27167878

                                                                            
Query: 270      cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 329
                 || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| ||
Sbjct: 27167877 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 27167818

                                                                         
Query: 330      tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcagg 386
                |||||| ||||| ||||||||||| || |  |||| ||  |||||||| ||||||||
Sbjct: 27167817 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcagg 27167761



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 388      gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 447
                |||||||||||||  ||||||||||||||||||||||| || ||||| || |||||||||
Sbjct: 27167674 gattccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttct 27167615

                              
Query: 448      tccagataaaactg 461
                ||||| ||||||||
Sbjct: 27167614 tccaggtaaaactg 27167601



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>gb|BT000202.1| Arabidopsis thaliana putative serine protease-like protein
            (At4g17100) mRNA, complete cds
          Length = 1361

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 409  aatatgtaaccttggtagtcgacatttcccttggcttcttccagataaaactgaatccag 468
            ||||| || ||||| || || ||| |||| |||||||| ||||  |||||||||| ||||
Sbjct: 1046 aatatatagccttgataatctacagttcctttggcttcctccaagtaaaactgaagccag 987

                             
Query: 469  ttatggaatcctgagac 485
            ||||||||||| |||||
Sbjct: 986  ttatggaatccagagac 970



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 514 atctcaccaacaaacacatgctcaaatgcagaaga 548
           |||||||| ||||| ||||||||||| ||||||||
Sbjct: 947 atctcacctacaaagacatgctcaaacgcagaaga 913



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>gb|AY093205.1| Arabidopsis thaliana putative serine protease-like protein
            (At4g17100) mRNA, complete cds
          Length = 1685

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 409  aatatgtaaccttggtagtcgacatttcccttggcttcttccagataaaactgaatccag 468
            ||||| || ||||| || || ||| |||| |||||||| ||||  |||||||||| ||||
Sbjct: 1191 aatatatagccttgataatctacagttcctttggcttcctccaagtaaaactgaagccag 1132

                             
Query: 469  ttatggaatcctgagac 485
            ||||||||||| |||||
Sbjct: 1131 ttatggaatccagagac 1115



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 514  atctcaccaacaaacacatgctcaaatgcagaaga 548
            |||||||| ||||| ||||||||||| ||||||||
Sbjct: 1092 atctcacctacaaagacatgctcaaacgcagaaga 1058



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>gb|AY813710.1| Schistosoma japonicum SJCHGC05913 protein mRNA, complete cds
          Length = 1480

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 517  tcaccaacaaacacatgctcaaatgcagaaga 548
            ||||||||||||||||| || |||||||||||
Sbjct: 1052 tcaccaacaaacacatgttcgaatgcagaaga 1021



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>emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 7
          Length = 201471

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 514    atctcaccaacaaacacatgctcaaatgcagaaga 548
              |||||||| ||||| ||||||||||| ||||||||
Sbjct: 173588 atctcacctacaaagacatgctcaaacgcagaaga 173622



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>emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 45
          Length = 199548

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 514    atctcaccaacaaacacatgctcaaatgcagaaga 548
              |||||||| ||||| ||||||||||| ||||||||
Sbjct: 159417 atctcacctacaaagacatgctcaaacgcagaaga 159451



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>emb|BX813846.1|CNS0ABZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB42ZD09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1706

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 514 atctcaccaacaaacacatgctcaaatgcagaaga 548
           |||||||| ||||| ||||||||||| ||||||||
Sbjct: 738 atctcacctacaaagacatgctcaaacgcagaaga 772



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>ref|XM_783872.1| PREDICTED: Strongylocentrotus purpuratus similar to Placental
           protein 11 precursor (PP11) (LOC583987), mRNA
          Length = 960

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 515 tctcaccaacaaacacatgctcaaatgcagaaga 548
           ||||||| |||||||||||||||||  |||||||
Sbjct: 538 tctcacctacaaacacatgctcaaacccagaaga 505



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>emb|AL645634.6| Human DNA sequence from clone RP11-402L1 on chromosome 10 Contains an
             adenylyl cyclase-associated protein 1 (CAP 1) pseudogene,
             a novel zinc finger protein gene (LOC220992), three novel
             genes, the ZNF32 gene for zinc finger protein 32 (KOX30),
             the ZNF32OS1 gene for zinc finger protein 32 opposite
             strand 1, the ZNF32OS2 gene for zinc finger protein 32
             opposite strand 2, a ribosomal protein L21 (RPL21)
             pseudogene and three CpG islands, complete sequence
          Length = 80106

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 430   acatttcccttggcttcttcc 450
             |||||||||||||||||||||
Sbjct: 71300 acatttcccttggcttcttcc 71320



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>gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosome 12, complete sequence
          Length = 151373

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 495    tccttgtctctgttcctttatctc 518
              |||||||||||||| |||||||||
Sbjct: 102066 tccttgtctctgtttctttatctc 102043



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>ref|XM_814587.1| Trypanosoma cruzi strain CL Brener hypothetical protein
             (Tc00.1047053507023.220) partial mRNA
          Length = 13521

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 507   ttcctttatctcaccaacaa 526
             ||||||||||||||||||||
Sbjct: 13122 ttcctttatctcaccaacaa 13103



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>gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complete sequence
          Length = 205784

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 495    tccttgtctctgttcctttatctc 518
              |||||||||||||| |||||||||
Sbjct: 195917 tccttgtctctgtttctttatctc 195940



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>ref|XM_805490.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053509171.100) partial mRNA
          Length = 1911

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 507  ttcctttatctcaccaacaa 526
            ||||||||||||||||||||
Sbjct: 1512 ttcctttatctcaccaacaa 1493



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>ref|XM_662168.1| Cryptosporidium hominis TU502 DNA-directed RNA polymerase II/III
           subunit (Chro.60382) partial mRNA
          Length = 5610

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 152 agttctctgcaatgggaaag 171
           ||||||||||||||||||||
Sbjct: 122 agttctctgcaatgggaaag 141



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>emb|AL845454.6| Human DNA sequence from clone DAQB-90C11 on chromosome 6 Contains HLA-H
             for major histocompatibility complex, class I, H
             (pseudogene), HLA-16 pseudogene, HCP5P6 for HLA complex P5
             pseudogene 6, HCG4P6 for HLA complex group 4 pseudogene 6,
             HLA-K for major histocompatibility complex, class I, K,
             HLA-21 pseudogene, HLA-A for major histocompatibility
             complex, class I, A, HCP5P3 for HLA complex P5 pseudogene
             3, HLA-80 pseudogene,  MICD for MHC class I
             polypeptide-related sequence D, HCG9 for HLA complex group
             9,  HCP5P2 for HLA complex P5 pseudogene 2, HLA-J for
             major histocompatibility complex, class I, J (pseudogene),
             HCG8 for HLA complex group 8, 5' end of C6orf12 for
             chromosome 6 open reading frame 12 and five CpG islands,
             complete sequence
          Length = 159427

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 498   ttgtctctgttcctttatctcacc 521
             ||||||||||||||||| ||||||
Sbjct: 87524 ttgtctctgttcctttacctcacc 87501



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>emb|BX538352.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4
          Length = 293050

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   agttctctgcaatgggaaag 171
             ||||||||||||||||||||
Sbjct: 33590 agttctctgcaatgggaaag 33571



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>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the
             5' end of the gene for a novel protein (330000P08Rik)
             (Luc7a), the gene for a novel protein (5530600A18Rik), the
             Abcc3 gene for ATP-binding cassette sub-family C
             (CFTR/MRP) member 3, the Cacna1g gene for calcium channel
             voltage-dependent T type alpha 1G subunit, the 3' end of
             the Tisp78 gene for transcript increased in spermiogenesis
             78 and one CpG island, complete sequence
          Length = 161978

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 558   gttaccacatcttccataca 577
             ||||||||||||||||||||
Sbjct: 85786 gttaccacatcttccataca 85805



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>emb|CR759762.5| Human DNA sequence from clone DAMC-190N15 on chromosome 6, complete
             sequence
          Length = 40072

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 498   ttgtctctgttcctttatctcacc 521
             ||||||||||||||||| ||||||
Sbjct: 12922 ttgtctctgttcctttacctcacc 12899



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>emb|CR388220.8| Human DNA sequence from clone DADB-123D8 on chromosome 6, complete
              sequence
          Length = 131368

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 498    ttgtctctgttcctttatctcacc 521
              ||||||||||||||||| ||||||
Sbjct: 113007 ttgtctctgttcctttacctcacc 112984



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>gb|AC113348.2| Homo sapiens chromosome 5 clone CTD-2537M22, complete sequence
          Length = 80723

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   gatgtcagcattgccttgaa 611
             ||||||||||||||||||||
Sbjct: 16201 gatgtcagcattgccttgaa 16220



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>ref|XM_627674.1| Cryptosporidium parvum Iowa II DNA-directed RNA polymerase III C1
           subunit (cgd6_3290), partial mRNA
          Length = 5616

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 152 agttctctgcaatgggaaag 171
           ||||||||||||||||||||
Sbjct: 122 agttctctgcaatgggaaag 141



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>gb|AF529557.1| Acipenser fulvescens clone AfuG218 microsatellite sequence
          Length = 458

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 457 aactgaatccagttatggaa 476
           ||||||||||||||||||||
Sbjct: 372 aactgaatccagttatggaa 353



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>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 498     ttgtctctgttcctttatctcacc 521
               ||||||||||||||||| ||||||
Sbjct: 1531971 ttgtctctgttcctttacctcacc 1531994



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>emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chromosome 2, complete
              sequence
          Length = 188464

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 577    aaagtaaaccaaagggatgt 596
              ||||||||||||||||||||
Sbjct: 161809 aaagtaaaccaaagggatgt 161828



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>gb|AF055066.1|AF055066 Homo sapiens MHC class 1 region
          Length = 319486

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 498   ttgtctctgttcctttatctcacc 521
             ||||||||||||||||| ||||||
Sbjct: 86715 ttgtctctgttcctttacctcacc 86738



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>ref|XM_311128.2| Anopheles gambiae str. PEST ENSANGP00000017337
           (ENSANGG00000014848), partial mRNA
          Length = 658

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 275 tgtagagtgccagctcgaactcag 298
           |||||||||||||||||| |||||
Sbjct: 79  tgtagagtgccagctcgagctcag 56



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>gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chromosome unknown,
             complete sequence
          Length = 153379

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    accaacagtgtaaatctcac 71
             ||||||||||||||||||||
Sbjct: 22400 accaacagtgtaaatctcac 22381



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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 516     ctcaccaacaaacacatgctcaaa 539
               ||||| ||||||||||||||||||
Sbjct: 1523477 ctcacaaacaaacacatgctcaaa 1523454



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>emb|AJ342601.1|HSA342601 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-NA10C
          Length = 605

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 78  aagggaaaagataaaaaccg 97
           ||||||||||||||||||||
Sbjct: 602 aagggaaaagataaaaaccg 583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,092,401
Number of Sequences: 3902068
Number of extensions: 6092401
Number of successful extensions: 142514
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142360
Number of HSP's gapped (non-prelim): 151
length of query: 694
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 671
effective length of database: 17,143,297,704
effective search space: 11503152759384
effective search space used: 11503152759384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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