ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags28c17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189406.1| Oryza sativa (japonica cultivar-group), predic... 50 0.007
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
3dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
4dbj|AK103064.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
5ref|XM_527074.1| PREDICTED: Pan troglodytes similar to TCOF1 pro... 44 0.46
6ref|XM_669706.1| Plasmodium berghei strain ANKA hypothetical pro... 44 0.46
7ref|XM_214552.3| PREDICTED: Rattus norvegicus Treacher Collins F... 44 0.46
8gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
9gb|AF187000.4| Homo sapiens chromosome 8 clone RP1-316L14 map 8q... 42 1.8
10gb|AE012369.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.8
11dbj|AB210216.1| Setaria italica GBSS1 gene, transposable element... 42 1.8
12gb|AC100872.2| Homo sapiens chromosome 8, clone RP11-973F15, com... 42 1.8
13gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.8
14gb|AF310966.1|AF310966 Linum usitatissimum cv. 'Koto' resistance... 42 1.8
15gb|AF310965.1|AF310965 Linum usitatissimum cv. 'Koto' resistance... 42 1.8
16gb|AF310961.1|AF310961 Linum usitatissimum cv. 'Leona' resistanc... 42 1.8
17gb|AF310960.1|AF310960 Linum usitatissimum cv. 'Abyssinian' resi... 42 1.8
18gb|AF310959.1|AF310959 Linum usitatissimum cv. 'Akmolinsk' resis... 42 1.8
19gb|AF310958.1|AF310958 Linum usitatissimum cv. 'Akmolinsk' resis... 42 1.8
20dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
21dbj|AP000902.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.8
22ref|NM_114873.1| Arabidopsis thaliana unknown protein AT3G50130 ... 40 7.1
23gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 7.1
24ref|XM_525391.1| PREDICTED: Pan troglodytes KIAA1196 protein (LO... 40 7.1
25gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 40 7.1
26ref|XM_879138.1| PREDICTED: Bos taurus similar to Disabled homol... 40 7.1
27ref|XM_879110.1| PREDICTED: Bos taurus similar to Disabled homol... 40 7.1
28ref|XM_866783.1| PREDICTED: Bos taurus similar to Disabled homol... 40 7.1
29ref|XM_586135.2| PREDICTED: Bos taurus similar to Disabled homol... 40 7.1
30ref|XM_879016.1| PREDICTED: Bos taurus similar to Disabled homol... 40 7.1
31ref|XM_456116.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F23265g ... 40 7.1
32gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosom... 40 7.1
33ref|XM_850143.1| PREDICTED: Canis familiaris similar to CG14299-... 40 7.1
34ref|XM_718929.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 7.1
35gb|BC111684.1| Bos taurus similar to Disabled homolog 2 (Differe... 40 7.1
36emb|AL592307.36| Human DNA sequence from clone RP11-458D21 on ch... 40 7.1
37emb|AL356115.9| Human DNA sequence from clone RP11-486O22 on chr... 40 7.1
38emb|AL118506.27|HSJ591C20 Human DNA sequence from clone RP4-591C... 40 7.1
39emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 7.1
40emb|AL359685.1|SPCC548 S.pombe chromosome III cosmid c548 40 7.1
41emb|AL132978.1|ATF3A4 Arabidopsis thaliana DNA chromosome 3, BAC... 40 7.1
42emb|AL035085.1|SPBC12D12 S.pombe chromosome II cosmid c12D12 40 7.1
43emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chro... 40 7.1
44gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosom... 40 7.1
45emb|AL834525.1|HSM805648 Homo sapiens mRNA; cDNA DKFZp434N2010 (... 40 7.1
46gb|AC008556.5| Homo sapiens chromosome 19 clone CTC-526N19, comp... 40 7.1
47gb|AC018457.14| Homo sapiens 3 BAC RP11-198G24 (Roswell Park Can... 40 7.1
48gb|AC100781.2| Homo sapiens chromosome 18, clone RP11-124E7, com... 40 7.1
49gb|AC034242.6| Homo sapiens chromosome 5 clone CTD-2514M18, comp... 40 7.1
50ref|NM_001021863.1| Schizosaccharomyces pombe 972h- hypothetical... 40 7.1
51gb|AY034142.1| Schizosaccharomyces pombe thioredoxin 2 gene, com... 40 7.1
52gb|AC146920.3| Otolemur garnettii clone CH256-154N14, complete s... 40 7.1
53gb|AC013361.6|AC013361 Homo sapiens chromosome 18, clone RP11-36... 40 7.1
54dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.1
55ref|NM_020713.1| Homo sapiens KIAA1196 protein (GM632), mRNA 40 7.1
56emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chr... 40 7.1
57emb|AJ339829.1|HSA339829 Homo sapiens genomic sequence surroundi... 40 7.1
58gb|AF027867.1|AF027867 Streptomyces achromogenes SacI methylase ... 40 7.1
59gb|AC138112.4| Mus musculus BAC clone RP24-291E8 from 3, complet... 40 7.1
60gb|AC140328.3| Mus musculus BAC clone RP23-404L15 from 8, comple... 40 7.1
61emb|AL805976.12| Mouse DNA sequence from clone RP23-34H1 on chro... 40 7.1
62gb|AC147500.6| Mus musculus BAC clone RP24-281C21 from chromosom... 40 7.1
63dbj|AB033022.1| Homo sapiens mRNA for KIAA1196 protein, partial cds 40 7.1 
>ref|NM_189406.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1089

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 250 ttcttcctcttcttggtgtgatcaatcaccaggcctccaaa 290
           |||||| |||||||||||||||| || |||||||| |||||
Sbjct: 998 ttcttcttcttcttggtgtgatcgattaccaggccaccaaa 958
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 250      ttcttcctcttcttggtgtgatcaatcaccaggcctccaaa 290
                |||||| |||||||||||||||| || |||||||| |||||
Sbjct: 42611241 ttcttcttcttcttggtgtgatcgattaccaggccaccaaa 42611281
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>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0458E05
          Length = 193577

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 250    ttcttcctcttcttggtgtgatcaatcaccaggcctccaaa 290
              |||||| |||||||||||||||| || |||||||| |||||
Sbjct: 132124 ttcttcttcttcttggtgtgatcgattaccaggccaccaaa 132164
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>dbj|AK103064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117N09, full
            insert sequence
          Length = 1783

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 250  ttcttcctcttcttggtgtgatcaatcaccaggcctccaaa 290
            |||||| |||||||||||||||| || |||||||| |||||
Sbjct: 1378 ttcttcttcttcttggtgtgatcgattaccaggccaccaaa 1338
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>ref|XM_527074.1| PREDICTED: Pan troglodytes similar to TCOF1 protein (LOC471696), mRNA
          Length = 5163

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 418  tcttctttgttggcagatttcttcttttccttcttggtcttt 459
            |||||||| ||| | ||||||||||| ||||||||| |||||
Sbjct: 5021 tcttctttcttgtcggatttcttcttctccttcttgctcttt 4980
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>ref|XM_669706.1| Plasmodium berghei strain ANKA hypothetical protein (PB403001.00.0)
           partial mRNA
          Length = 2034

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 243 cttcgccttcttcctcttcttg 264
           ||||||||||||||||||||||
Sbjct: 661 cttcgccttcttcctcttcttg 640
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>ref|XM_214552.3| PREDICTED: Rattus norvegicus Treacher Collins Franceschetti syndrome
            1, homolog (predicted) (Tcof1_predicted), mRNA
          Length = 4686

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 433  gatttcttcttttccttcttggtctt 458
            ||||||||||||||||||||| ||||
Sbjct: 4085 gatttcttcttttccttcttgctctt 4060
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>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02,
              complete sequence
          Length = 157106

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 250    ttcttcctcttcttggtgtgatcaatcaccaggcctccaaa 290
              |||||| |||||||||||||||| || ||||| || |||||
Sbjct: 117951 ttcttcttcttcttggtgtgatcgattaccagaccaccaaa 117911
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>gb|AF187000.4| Homo sapiens chromosome 8 clone RP1-316L14 map 8q24.2, complete
             sequence
          Length = 129679

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 298   ccatcggcagcagttcccaggggct 322
             ||||||||| |||||||||||||||
Sbjct: 94762 ccatcggcaccagttcccaggggct 94738
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>gb|AE012369.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 277
           of 460 of the complete genome
          Length = 10540

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 373 tccgcaaacgacacttcggtg 393
           |||||||||||||||||||||
Sbjct: 540 tccgcaaacgacacttcggtg 520
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>dbj|AB210216.1| Setaria italica GBSS1 gene, transposable element TSI-7 in exon 3
          Length = 8053

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 435  tttcttcttttccttcttggt 455
            |||||||||||||||||||||
Sbjct: 6266 tttcttcttttccttcttggt 6286
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>gb|AC100872.2| Homo sapiens chromosome 8, clone RP11-973F15, complete sequence
          Length = 195563

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 298    ccatcggcagcagttcccaggggct 322
              ||||||||| |||||||||||||||
Sbjct: 100942 ccatcggcaccagttcccaggggct 100918
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 373     tccgcaaacgacacttcggtg 393
               |||||||||||||||||||||
Sbjct: 1860084 tccgcaaacgacacttcggtg 1860104
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>gb|AF310966.1|AF310966 Linum usitatissimum cv. 'Koto' resistance-like protein P-B (p-B)
            gene, complete cds
          Length = 4438

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 435  tttcttcttttccttcttggt 455
            |||||||||||||||||||||
Sbjct: 2268 tttcttcttttccttcttggt 2248
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>gb|AF310965.1|AF310965 Linum usitatissimum cv. 'Koto' resistance-like protein P-A (p-A)
            pseudogene, complete sequence
          Length = 4108

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 435  tttcttcttttccttcttggt 455
            |||||||||||||||||||||
Sbjct: 1843 tttcttcttttccttcttggt 1823
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>gb|AF310961.1|AF310961 Linum usitatissimum cv. 'Leona' resistance-like protein P3-A (p3-A)
            gene, complete cds
          Length = 4067

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 435  tttcttcttttccttcttggt 455
            |||||||||||||||||||||
Sbjct: 1802 tttcttcttttccttcttggt 1782
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>gb|AF310960.1|AF310960 Linum usitatissimum cv. 'Abyssinian' resistance-like protein P2-A
            (p2-A), P2 rust resistance protein, and germin-like
            protein genes, complete cds
          Length = 14139

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 435  tttcttcttttccttcttggt 455
            |||||||||||||||||||||
Sbjct: 9081 tttcttcttttccttcttggt 9061



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 435  tttcttcttttccttcttggt 455
            |||||||||||||||||||||
Sbjct: 2482 tttcttcttttccttcttggt 2462
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>gb|AF310959.1|AF310959 Linum usitatissimum cv. 'Akmolinsk' resistance-like protein P1-B
            (p1-B) gene, complete cds
          Length = 4385

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 435  tttcttcttttccttcttggt 455
            |||||||||||||||||||||
Sbjct: 2217 tttcttcttttccttcttggt 2197
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>gb|AF310958.1|AF310958 Linum usitatissimum cv. 'Akmolinsk' resistance-like protein P1-A
            (p1-A) gene, complete cds
          Length = 4141

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 435  tttcttcttttccttcttggt 455
            |||||||||||||||||||||
Sbjct: 1865 tttcttcttttccttcttggt 1845
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 250      ttcttcctcttcttggtgtgatcaatcaccaggcctccaaa 290
                |||||| |||||||||||||||| || ||||| || |||||
Sbjct: 27887534 ttcttcttcttcttggtgtgatcgattaccagaccaccaaa 27887494
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>dbj|AP000902.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-692N5, complete
             sequences
          Length = 186626

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 471   attggaagaagctttgtcatg 491
             |||||||||||||||||||||
Sbjct: 57207 attggaagaagctttgtcatg 57227
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>ref|NM_114873.1| Arabidopsis thaliana unknown protein AT3G50130 mRNA, complete cds
          Length = 1695

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  tttgctgctcttgtcctgct 523
            ||||||||||||||||||||
Sbjct: 1615 tttgctgctcttgtcctgct 1634
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 435    tttcttcttttccttcttgg 454
              ||||||||||||||||||||
Sbjct: 933771 tttcttcttttccttcttgg 933752
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>ref|XM_525391.1| PREDICTED: Pan troglodytes KIAA1196 protein (LOC470007), mRNA
          Length = 3408

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 435  tttcttcttttccttcttgg 454
            ||||||||||||||||||||
Sbjct: 3237 tttcttcttttccttcttgg 3218
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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    cttcttcctcttcttggtgt 268
              ||||||||||||||||||||
Sbjct: 841827 cttcttcctcttcttggtgt 841846
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>ref|XM_879138.1| PREDICTED: Bos taurus similar to Disabled homolog 2 (Differentially
           expressed protein 2) (DOC-2), transcript variant 6
           (LOC509221), mRNA
          Length = 2861

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 tttcttcttttccttcttgg 454
           ||||||||||||||||||||
Sbjct: 329 tttcttcttttccttcttgg 310
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>ref|XM_879110.1| PREDICTED: Bos taurus similar to Disabled homolog 2 (Differentially
           expressed protein 2) (DOC-2), transcript variant 5
           (LOC509221), mRNA
          Length = 2919

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 tttcttcttttccttcttgg 454
           ||||||||||||||||||||
Sbjct: 329 tttcttcttttccttcttgg 310
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>ref|XM_866783.1| PREDICTED: Bos taurus similar to Disabled homolog 2 (Differentially
           expressed protein 2) (DOC-2), transcript variant 2
           (LOC509221), mRNA
          Length = 2982

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 tttcttcttttccttcttgg 454
           ||||||||||||||||||||
Sbjct: 329 tttcttcttttccttcttgg 310
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>ref|XM_586135.2| PREDICTED: Bos taurus similar to Disabled homolog 2 (Differentially
           expressed protein 2) (DOC-2), transcript variant 1
           (LOC509221), mRNA
          Length = 2328

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 tttcttcttttccttcttgg 454
           ||||||||||||||||||||
Sbjct: 329 tttcttcttttccttcttgg 310
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>ref|XM_879016.1| PREDICTED: Bos taurus similar to Disabled homolog 2 (Differentially
           expressed protein 2) (DOC-2), transcript variant 4
           (LOC509221), mRNA
          Length = 1852

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 tttcttcttttccttcttgg 454
           ||||||||||||||||||||
Sbjct: 329 tttcttcttttccttcttgg 310
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>ref|XM_456116.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F23265g predicted mRNA
          Length = 2904

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 435 tttcttcttttccttcttggtctt 458
           ||||||||||||||||||| ||||
Sbjct: 961 tttcttcttttccttcttgttctt 938
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>gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosome 2, complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 437   tcttcttttccttcttggtctttccttc 464
             |||||||| |||| ||||||||||||||
Sbjct: 29311 tcttctttccctttttggtctttccttc 29284
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>ref|XM_850143.1| PREDICTED: Canis familiaris similar to CG14299-PA, isoform A
           (LOC612410), mRNA
          Length = 3351

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 431 cagatttcttcttttccttc 450
           ||||||||||||||||||||
Sbjct: 631 cagatttcttcttttccttc 612
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>ref|XM_718929.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03816)
            partial mRNA
          Length = 2832

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  cttcgccttcttcctcttct 262
            ||||||||||||||||||||
Sbjct: 1333 cttcgccttcttcctcttct 1314
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>gb|BC111684.1| Bos taurus similar to Disabled homolog 2 (Differentially expressed
           protein 2) (DOC-2), mRNA (cDNA clone IMAGE:8181047),
           partial cds
          Length = 805

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 tttcttcttttccttcttgg 454
           ||||||||||||||||||||
Sbjct: 364 tttcttcttttccttcttgg 345
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>emb|AL592307.36| Human DNA sequence from clone RP11-458D21 on chromosome 1 Contains the
              gene for a novel protein similar to Notch homolog 2
              (Drosophila) NOTCH2, a novel gene and a CpG island,
              complete sequence
          Length = 204307

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 243    cttcgccttcttcctcttcttggt 266
              ||||| ||||||||||||||||||
Sbjct: 139139 cttcgtcttcttcctcttcttggt 139116
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>emb|AL356115.9| Human DNA sequence from clone RP11-486O22 on chromosome 10 Contains the
              3' end of a novel gene (KIAA1128, FLJ14262, FLJ25809) , the
              5' end of a Siah-interacting protein (SIP) (calcyclin
              binding protein) pseudogene, ribosomal protein S3A
              pseudogene 5 (RPS3AP5) and two CpG islands, complete
              sequence
          Length = 150151

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    ctaacagatctcagcctgca 125
              ||||||||||||||||||||
Sbjct: 124271 ctaacagatctcagcctgca 124290
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>emb|AL118506.27|HSJ591C20 Human DNA sequence from clone RP4-591C20 on chromosome 20 Contains the
              C20orf135 gene for chromosome 20 open reading frame 135,
              the TPD52L2 gene for tumor protein D52-like protein 2, the
              DNAJC5 gene for member 5 of DnaJ (Hsp40) homolog subfamily
              C, the URKL1 gene for uridine kinase-like 1, the gene for a
              novel protein (KIAA1196), the C20orf136 gene for chromosome
              20 open reading frame 136, the 5' end of the C20orf14 gene
              for chromosome 20 open reading frame 14 and twelve CpG
              islands, complete sequence
          Length = 139505

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 435    tttcttcttttccttcttgg 454
              ||||||||||||||||||||
Sbjct: 101007 tttcttcttttccttcttgg 101026
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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 435     tttcttcttttccttcttggtctt 458
               ||||||||||||||||||| ||||
Sbjct: 2172468 tttcttcttttccttcttgttctt 2172491
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>emb|AL359685.1|SPCC548 S.pombe chromosome III cosmid c548
          Length = 18591

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 433 gatttcttcttttccttctt 452
           ||||||||||||||||||||
Sbjct: 633 gatttcttcttttccttctt 652
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>emb|AL132978.1|ATF3A4 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4
          Length = 108158

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 504   tttgctgctcttgtcctgct 523
             ||||||||||||||||||||
Sbjct: 86509 tttgctgctcttgtcctgct 86490
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>emb|AL035085.1|SPBC12D12 S.pombe chromosome II cosmid c12D12
          Length = 18000

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   ctttatcttctttgttggca 432
             ||||||||||||||||||||
Sbjct: 15719 ctttatcttctttgttggca 15700
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>emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chromosome 4 Contains a
             component of oligomeric golgi complex 1 (Cog5) pseudogene
             and part of the Ptprd gene for receptor type protein
             tyrosine phosphatase D, complete sequence
          Length = 198523

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    acaaggaccctacagcaggatttt 104
             ||||| ||||||||||||||||||
Sbjct: 71295 acaagaaccctacagcaggatttt 71272
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>gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosome 9, complete sequence
          Length = 140400

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   gccttcttcctcttcttggt 266
             ||||||||||||||||||||
Sbjct: 53678 gccttcttcctcttcttggt 53659
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>emb|AL834525.1|HSM805648 Homo sapiens mRNA; cDNA DKFZp434N2010 (from clone DKFZp434N2010)
          Length = 4605

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 435  tttcttcttttccttcttgg 454
            ||||||||||||||||||||
Sbjct: 1237 tttcttcttttccttcttgg 1218
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>gb|AC008556.5| Homo sapiens chromosome 19 clone CTC-526N19, complete sequence
          Length = 142515

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   tttccttcttggtctttcct 462
             ||||||||||||||||||||
Sbjct: 93061 tttccttcttggtctttcct 93080
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>gb|AC018457.14| Homo sapiens 3 BAC RP11-198G24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 175330

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   tttccttcttggtctttcct 462
             ||||||||||||||||||||
Sbjct: 69115 tttccttcttggtctttcct 69134
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>gb|AC100781.2| Homo sapiens chromosome 18, clone RP11-124E7, complete sequence
          Length = 158180

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 439    ttcttttccttcttggtctttcct 462
              |||| |||||||||||||||||||
Sbjct: 122606 ttctcttccttcttggtctttcct 122629
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>gb|AC034242.6| Homo sapiens chromosome 5 clone CTD-2514M18, complete sequence
          Length = 221452

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    gatttcttcttttccttctt 452
              ||||||||||||||||||||
Sbjct: 136661 gatttcttcttttccttctt 136680
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>ref|NM_001021863.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPBC12D12.07c), partial mRNA
          Length = 366

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 ctttatcttctttgttggca 432
           ||||||||||||||||||||
Sbjct: 332 ctttatcttctttgttggca 351
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>gb|AY034142.1| Schizosaccharomyces pombe thioredoxin 2 gene, complete cds
          Length = 1823

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 413  ctttatcttctttgttggca 432
            ||||||||||||||||||||
Sbjct: 1504 ctttatcttctttgttggca 1523
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>gb|AC146920.3| Otolemur garnettii clone CH256-154N14, complete sequence
          Length = 163387

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    cttcttcctcttcttggtgt 268
              ||||||||||||||||||||
Sbjct: 116023 cttcttcctcttcttggtgt 116042
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>gb|AC013361.6|AC013361 Homo sapiens chromosome 18, clone RP11-367D23, complete sequence
          Length = 154713

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 439   ttcttttccttcttggtctttcct 462
             |||| |||||||||||||||||||
Sbjct: 52635 ttctcttccttcttggtctttcct 52612
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 233     tagggatgcccttcgccttc 252
               ||||||||||||||||||||
Sbjct: 4415275 tagggatgcccttcgccttc 4415256
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>ref|NM_020713.1| Homo sapiens KIAA1196 protein (GM632), mRNA
          Length = 5919

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 435  tttcttcttttccttcttgg 454
            ||||||||||||||||||||
Sbjct: 2562 tttcttcttttccttcttgg 2543
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>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete
             sequence
          Length = 238545

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 437   tcttcttttccttcttggtctttccttc 464
             |||||||| |||| ||||||||||||||
Sbjct: 51666 tcttctttccctttttggtctttccttc 51693
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>emb|AJ339829.1|HSA339829 Homo sapiens genomic sequence surrounding NotI site, clone NL4-AK4R
          Length = 610

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 438 cttcttttccttctt-ggtctttccttc 464
           ||||||||||||||| ||||||||||||
Sbjct: 484 cttcttttccttcttcggtctttccttc 511
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>gb|AF027867.1|AF027867 Streptomyces achromogenes SacI methylase (sacIM) and SacI
           restriction endonuclease (sacIR) genes, complete cds
          Length = 2431

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 260 tcttggtgtgatcaatcacc 279
           ||||||||||||||||||||
Sbjct: 694 tcttggtgtgatcaatcacc 675
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>gb|AC138112.4| Mus musculus BAC clone RP24-291E8 from 3, complete sequence
          Length = 173988

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    caggcaccactaatcccatc 169
              ||||||||||||||||||||
Sbjct: 112789 caggcaccactaatcccatc 112770
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>gb|AC140328.3| Mus musculus BAC clone RP23-404L15 from 8, complete sequence
          Length = 194350

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 241  cccttcgccttcttcctcttcttg 264
            |||||| |||||||||||||||||
Sbjct: 5662 cccttccccttcttcctcttcttg 5685
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>emb|AL805976.12| Mouse DNA sequence from clone RP23-34H1 on chromosome 4, complete
              sequence
          Length = 192098

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 498    tttcggtttgctgctcttgt 517
              ||||||||||||||||||||
Sbjct: 128242 tttcggtttgctgctcttgt 128261
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>gb|AC147500.6| Mus musculus BAC clone RP24-281C21 from chromosome 8, complete sequence
          Length = 185450

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 241   cccttcgccttcttcctcttcttg 264
             |||||| |||||||||||||||||
Sbjct: 63620 cccttccccttcttcctcttcttg 63597
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>dbj|AB033022.1| Homo sapiens mRNA for KIAA1196 protein, partial cds
          Length = 5742

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 435  tttcttcttttccttcttgg 454
            ||||||||||||||||||||
Sbjct: 2386 tttcttcttttccttcttgg 2367


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,524,903
Number of Sequences: 3902068
Number of extensions: 5524903
Number of successful extensions: 138451
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 138163
Number of HSP's gapped (non-prelim): 289
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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