| Clone Name | rbags28c16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete cds Length = 2048 Score = 58.0 bits (29), Expect = 2e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 338 aaatgacagtgcangaaccacacacctggatt 369 ||||||||||||| |||||||||||||||||| Sbjct: 1680 aaatgacagtgcatgaaccacacacctggatt 1649
>ref|XM_467807.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1740 Score = 48.1 bits (24), Expect = 0.021 Identities = 32/35 (91%) Strand = Plus / Minus Query: 335 tcaaaatgacagtgcangaaccacacacctggatt 369 |||||||| || |||| |||||||||||||||||| Sbjct: 1637 tcaaaatggcaatgcatgaaccacacacctggatt 1603
>ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative diphenol oxidase (OSJNBb0040I11.7), mRNA Length = 1404 Score = 48.1 bits (24), Expect = 0.021 Identities = 32/35 (91%) Strand = Plus / Minus Query: 335 tcaaaatgacagtgcangaaccacacacctggatt 369 |||||||| || |||| |||||||||||||||||| Sbjct: 1301 tcaaaatggcaatgcatgaaccacacacctggatt 1267
>ref|NM_193864.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1800 Score = 48.1 bits (24), Expect = 0.021 Identities = 32/35 (91%) Strand = Plus / Minus Query: 335 tcaaaatgacagtgcangaaccacacacctggatt 369 |||||||| || |||| |||||||||||||||||| Sbjct: 1697 tcaaaatggcaatgcatgaaccacacacctggatt 1663
>gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LAC2-3) mRNA, complete cds Length = 2030 Score = 46.1 bits (23), Expect = 0.083 Identities = 25/26 (96%) Strand = Plus / Minus Query: 344 cagtgcangaaccacacacctggatt 369 ||||||| |||||||||||||||||| Sbjct: 1714 cagtgcatgaaccacacacctggatt 1689
>ref|NM_190554.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1734 Score = 44.1 bits (22), Expect = 0.33 Identities = 27/29 (93%) Strand = Plus / Minus Query: 338 aaatgacagtgcangaaccacacacctgg 366 ||||||||||||| |||||| |||||||| Sbjct: 1628 aaatgacagtgcatgaaccatacacctgg 1600
>dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B10, full insert sequence Length = 2066 Score = 44.1 bits (22), Expect = 0.33 Identities = 27/29 (93%) Strand = Plus / Minus Query: 338 aaatgacagtgcangaaccacacacctgg 366 ||||||||||||| |||||| |||||||| Sbjct: 1744 aaatgacagtgcatgaaccatacacctgg 1716
>dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D01, full insert sequence Length = 644 Score = 44.1 bits (22), Expect = 0.33 Identities = 27/29 (93%) Strand = Plus / Minus Query: 338 aaatgacagtgcangaaccacacacctgg 366 ||||||||||||| |||||| |||||||| Sbjct: 320 aaatgacagtgcatgaaccatacacctgg 292
>gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRNA, partial cds Length = 1874 Score = 44.1 bits (22), Expect = 0.33 Identities = 27/29 (93%) Strand = Plus / Minus Query: 338 aaatgacagtgcangaaccacacacctgg 366 ||||||||||||| |||||| |||||||| Sbjct: 1550 aaatgacagtgcatgaaccatacacctgg 1522
>gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, complete sequence Length = 247961 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 aggctttattcaaacaactgt 164 ||||||||||||||||||||| Sbjct: 60267 aggctttattcaaacaactgt 60287
>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22, complete sequence Length = 147994 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 ctggatttttggtgacaaatc 383 ||||||||||||||||||||| Sbjct: 74247 ctggatttttggtgacaaatc 74267
>gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete cds Length = 2090 Score = 42.1 bits (21), Expect = 1.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 338 aaatgacagtgcangaaccacacacctggatt 369 ||||||||||||| |||||| || |||||||| Sbjct: 1706 aaatgacagtgcatgaaccaaacccctggatt 1675
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 aaatgacagtgcangaaccacacacctg 365 ||||||||||||| |||||| ||||||| Sbjct: 36159512 aaatgacagtgcatgaaccatacacctg 36159539 Score = 40.1 bits (20), Expect = 5.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 335 tcaaaatgacagtgcangaaccacacacctg 365 |||||||| || |||| |||||||||||||| Sbjct: 15429509 tcaaaatggcaatgcatgaaccacacacctg 15429479
>gb|AC130277.6| Mus musculus chromosome 1, clone RP24-387G4, complete sequence Length = 125118 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 aggctttattcaaacaactgt 164 ||||||||||||||||||||| Sbjct: 833 aggctttattcaaacaactgt 813
>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406G08 Length = 144233 Score = 42.1 bits (21), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 aaatgacagtgcangaaccacacacctg 365 ||||||||||||| |||||| ||||||| Sbjct: 36525 aaatgacagtgcatgaaccatacacctg 36552
>emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 in linkage group 10, complete sequence Length = 200648 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cactcagcgattaaacaata 94 |||||||||||||||||||| Sbjct: 7575 cactcagcgattaaacaata 7594
>emb|AL357060.31| Human DNA sequence from clone RP11-356I2 on chromosome 6 Contains three novel genes, the TNFAIP3 gene for tumour necrosis factor alpha-induced protein 3 and a CpG island, complete sequence Length = 182209 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tacatttcctttcatgcatg 53 |||||||||||||||||||| Sbjct: 8462 tacatttcctttcatgcatg 8481
>emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chromosome 10 Contains two novel genes, the 5'end of the gene for VPS10 domain receptor protein SORCS 3 (SORCS3) and a CpG island, complete sequence Length = 153764 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 ggaagagtcgaatccaaagttgga 286 ||||||||| |||||||||||||| Sbjct: 91740 ggaagagtcaaatccaaagttgga 91717
>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two novel genes, the 5'end of the gene for VPS10 domain receptor protein SORCS 3 (SORCS3) and one CpG island, complete sequence Length = 183833 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 ggaagagtcgaatccaaagttgga 286 ||||||||| |||||||||||||| Sbjct: 177883 ggaagagtcaaatccaaagttgga 177860
>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128301 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 agaaatacgaaaatctcgaaacaa 188 ||||||| |||||||||||||||| Sbjct: 112244 agaaataggaaaatctcgaaacaa 112267
>gb|BC032871.2| Homo sapiens cDNA clone IMAGE:5264902, partial cds Length = 3421 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 aaacaaggcaacccagcctaggct 148 ||||||||||||||||||| |||| Sbjct: 669 aaacaaggcaacccagcctgggct 646
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 40.1 bits (20), Expect = 5.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 335 tcaaaatgacagtgcangaaccacacacctg 365 |||||||| || |||| |||||||||||||| Sbjct: 757 tcaaaatggcaatgcatgaaccacacacctg 727
>gb|AC026801.7| Homo sapiens chromosome 5 clone CTD-2517O10, complete sequence Length = 177284 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 aaacaaggcaacccagcctaggct 148 ||||||||||||||||||| |||| Sbjct: 109248 aaacaaggcaacccagcctgggct 109225
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.1 Identities = 28/31 (90%) Strand = Plus / Plus Query: 335 tcaaaatgacagtgcangaaccacacacctg 365 |||||||| || |||| |||||||||||||| Sbjct: 27885050 tcaaaatggcaatgcatgaaccacacacctg 27885080
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 335 tcaaaatgacagtgcangaaccacacacctg 365 |||||||| || |||| |||||||||||||| Sbjct: 15147058 tcaaaatggcaatgcatgaaccacacacctg 15147028
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.1 Identities = 28/31 (90%) Strand = Plus / Plus Query: 335 tcaaaatgacagtgcangaaccacacacctg 365 |||||||| || |||| |||||||||||||| Sbjct: 31534114 tcaaaatggcaatgcatgaaccacacacctg 31534144
>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11, complete sequence Length = 129420 Score = 40.1 bits (20), Expect = 5.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 335 tcaaaatgacagtgcangaaccacacacctg 365 |||||||| || |||| |||||||||||||| Sbjct: 55671 tcaaaatggcaatgcatgaaccacacacctg 55641
>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045D11 Length = 142320 Score = 40.1 bits (20), Expect = 5.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 335 tcaaaatgacagtgcangaaccacacacctg 365 |||||||| || |||| |||||||||||||| Sbjct: 107050 tcaaaatggcaatgcatgaaccacacacctg 107020
>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0431B06 Length = 154796 Score = 40.1 bits (20), Expect = 5.1 Identities = 28/31 (90%) Strand = Plus / Plus Query: 335 tcaaaatgacagtgcangaaccacacacctg 365 |||||||| || |||| |||||||||||||| Sbjct: 24674 tcaaaatggcaatgcatgaaccacacacctg 24704
>emb|CR925751.6| Zebrafish DNA sequence from clone DKEY-264M23 in linkage group 10, complete sequence Length = 111720 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cactcagcgattaaacaata 94 |||||||||||||||||||| Sbjct: 101117 cactcagcgattaaacaata 101136
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 335 tcaaaatgacagtgcangaaccacacacctg 365 |||||||| || |||| |||||||||||||| Sbjct: 15155299 tcaaaatggcaatgcatgaaccacacacctg 15155269
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.1 Identities = 28/31 (90%) Strand = Plus / Plus Query: 335 tcaaaatgacagtgcangaaccacacacctg 365 |||||||| || |||| |||||||||||||| Sbjct: 27909038 tcaaaatggcaatgcatgaaccacacacctg 27909068 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,274,111 Number of Sequences: 3902068 Number of extensions: 3274111 Number of successful extensions: 63337 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63166 Number of HSP's gapped (non-prelim): 171 length of query: 385 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 363 effective length of database: 17,147,199,772 effective search space: 6224433517236 effective search space used: 6224433517236 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)