>COBA1_RAT (P20909) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 482

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 105 GPPRMDAPVGPSHDECRSGPN*QSSKTPMIRRKQPPNPTTQV 230
           GPP +  P GP  ++  SGP  Q   + M     PP P  +V
Sbjct: 177 GPPGLPGPAGPKGNKGSSGPTGQKGDSGMPGPPGPPGPPGEV 218

>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor|
          Length = 1804

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 105  GPPRMDAPVGPSHDECRSGPN*QSSKTPMIRRKQPPNPTTQV 230
            GPP +  P GP  ++  SGP  Q   + M     PP P  +V
Sbjct: 1499 GPPGLPGPAGPKGNKGSSGPTGQKGDSGMPGPPGPPGPPGEV 1540

>ZN227_HUMAN (Q86WZ6) Zinc finger protein 227|
          Length = 799

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 125 PCRAITR*MPQRPQLTIIQNAHDSSKATAESNHTSINTHNRHSTLRKLAPAANLNKKSQS 304
           PC    R     P+L +  N H   K  ++S+H  + TH R      + P   LN+  +S
Sbjct: 251 PCGECGRGFSYSPRLPLHPNVHTGEKCFSQSSH--LRTHQR------IHPGEKLNRCHES 302

Query: 305 NTC 313
             C
Sbjct: 303 GDC 305

>JAG2_RAT (P97607) Jagged-2 (Jagged2) (Fragment)|
          Length = 1202

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = -1

Query: 113 WRTC-----PGLLLARCPPRQQHCQEEKIGPHCQAP 21
           W+ C     P  L A+CPP QQ C+E+ +G   Q P
Sbjct: 863 WKPCLLSPQPSALSAQCPPGQQ-CREKAMGQCLQPP 897

>IF2_ENTFA (Q835U8) Translation initiation factor IF-2|
          Length = 798

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 179 QNAHDSSKATAESNHTSINTHNRHSTLRKLAPAANLNKKSQSN 307
           QN H  S     SN T+ N  NR +T        N N+ SQ+N
Sbjct: 110 QNRHGQSNTQNRSNQTNTNNQNR-NTQNNNGSTTNQNRTSQNN 151

>OSH3_YEAST (P38713) Oxysterol-binding protein homolog 3|
          Length = 996

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 176 IQNAHDSSKATAESNHTSINTHNRHSTLRKLAPAANLNKKSQSNTCSLTRGD 331
           I ++   S  T + NH+  +  NRH   R+  P     K +QS+T + T  D
Sbjct: 566 IASSSVESYTTNDENHSRKHLKNRHKNRRRGHPHHQKTKSAQSSTETFTSKD 617

>MSB1_YEAST (P21339) Morphogenesis-related protein MSB1 (Multicopy suppressor|
           of bud emergence 1)
          Length = 1137

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 197 SKATAESNHTSINTHNRHSTLRKLAPAANLNKKSQSNTCS 316
           SK     N  ++N H+    + K  P  NL KKS SN+ S
Sbjct: 551 SKNALTKNKHNVNLHSFEHKISKWNPLNNLRKKSGSNSSS 590

>VGLG_BRSVW (O10687) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 263

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 150 CRSGPN*QSSKTPMIRRKQPPNP-TTQV*TRTT 245
           C+ GP   SS+ P I  K+ P P TT+  T+TT
Sbjct: 186 CQIGPERASSRAPTITLKKTPKPKTTKKPTKTT 218

>OXAA_HELHP (Q7VJY0) Inner membrane protein oxaA|
          Length = 591

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +2

Query: 152 PQRP-----QLTIIQNAHDSSKATAESNHTSINTHNRHSTLRKLAPAANLNKKSQS 304
           PQ+P     Q    QN  D+ ++   S HT INT        ++AP  N+   +QS
Sbjct: 35  PQKPHQNTHQAHTAQNTQDTQESIQASTHTEINT--------QVAPHQNIQDSTQS 82

>YH07_YEAST (P38890) Hypothetical 60.5 kDa protein in SKN7-TWT1 intergenic|
           region
          Length = 526

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 246 DIRHSGNWHRQQI*IKSLSPTHALSLGVIXSSH--XSAGTYIQTWCALCNCNQR 401
           DI H+GNW R     +    T A S+G+I  S    + G   + W  L + +QR
Sbjct: 219 DILHAGNWKRFVNYCEKYCFTAAFSVGLIYGSMLLDTTGEVKEQWQKLASISQR 272

>PVRL3_BRARE (Q58EG3) Poliovirus receptor-related protein 3 precursor|
          Length = 574

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +3

Query: 177 SKTPMIRRKQPPN-----PTTQV*TRTTDIRHS--GNWHRQQI*IKSLSPTHALSLGVI 332
           S+   IR + PP+     PTT V   T DI  +  GN  R  I   +L+P H  SLG I
Sbjct: 330 SRDIRIRIQDPPSTTTMPPTTPVRLLTADISATAPGNKQRALITSPTLAPLHEGSLGTI 388

>K0853_HUMAN (Q5T200) Protein KIAA0853|
          Length = 1668

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
 Frame = +3

Query: 90  QQPRTGPPRMDAPVGPSHDECRSGPN*QSSK--------TPMIRRKQPPNPTTQV*TRTT 245
           Q+ +   PR  +P G  H    S  +  SS+        +P  RRK+ P+P+ Q  T T 
Sbjct: 307 QREKRDKPRSTSPAGQHHSPISSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQR-TLTP 365

Query: 246 DIRHSGNWHRQQI*IKSLSPTHALS 320
            +R S           S  P+H+LS
Sbjct: 366 PLRRSA----------SPYPSHSLS 380

>SL9A2_RAT (P48763) Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2)|
           (NHE-2) (Solute carrier family 9 member 2) (H7)
          Length = 813

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 137 ITR*MPQRPQLTIIQNAHDSSKATAESNHTSINTHNRHSTLRKLAPAANLNKKSQSNT 310
           ++R + Q  Q T+  N H+ +  T+E     I    RHS    L    +LN++ +++T
Sbjct: 606 LSRNLYQIRQRTLSYNRHNLTADTSERQAKEILIRRRHSLRESLRKDNSLNRERRAST 663

>PCSK6_RAT (Q63415) Proprotein convertase subtilisin/kexin type 6 precursor|
           (EC 3.4.21.-) (Paired basic amino acid cleaving enzyme
           4) (Subtilisin/kexin-like protease PACE4)
           (Subtilisin-like proprotein convertase 4) (SPC4)
          Length = 937

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 376 HHVCMYVPAXLCEL*ITPSERACVGLRLFIQICCR 272
           +H C       CE+    S R C   +LFIQ CCR
Sbjct: 900 NHTCSNADETFCEM--VKSNRLCER-KLFIQFCCR 931

>SL9A2_HUMAN (Q9UBY0) Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2)|
           (NHE-2) (Solute carrier family 9 member 2)
          Length = 812

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 137 ITR*MPQRPQLTIIQNAHDSSKATAESNHTSINTHNRHSTLRKLAPAANLNKKSQSNT 310
           ++R + Q  Q T+  N H  +  T+E     I    RHS    +   ++LN++ +++T
Sbjct: 605 LSRNLYQIRQRTLSYNRHSLTADTSERQAKEILIRRRHSLRESIRKDSSLNREHRAST 662

>YEQ1_YEAST (P40045) Protein YER071C|
          Length = 126

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 12/59 (20%)
 Frame = +2

Query: 149 MPQRPQLTIIQNAHDSSKATAESNHTSINTHN-----------RHSTLRK-LAPAANLN 289
           +P+R  +T+IQ ++DS K   E N ++ +T N           +HS+L K +A    LN
Sbjct: 17  LPERKLVTLIQESYDSLKDDNEINLSTESTSNLLIKLVLEKLEKHSSLYKYIASVTTLN 75

>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 105  GPPRMDAPVGPSHDECRSGPN*QSSKTPMIRRKQPPNPTTQV 230
            GPP +  P GP  ++  +GP  Q   + +     PP P  +V
Sbjct: 1501 GPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGPPGPPGEV 1542

>PCSK6_HUMAN (P29122) Proprotein convertase subtilisin/kexin type 6 precursor (EC|
            3.4.21.-) (Paired basic amino acid cleaving enzyme 4)
            (Subtilisin/kexin-like protease PACE4) (Subtilisin-like
            proprotein convertase 4) (SPC4)
          Length = 969

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 376  HHVCMYVPAXLCEL*ITPSERACVGLRLFIQICCR 272
            +H C       CE+    S R C   +LFIQ CCR
Sbjct: 932  NHTCSNADETFCEM--VKSNRLCER-KLFIQFCCR 963

>EMIL3_MOUSE (P59900) EMILIN-3 precursor (EMILIN-5) (Elastin microfibril|
           interface located protein 5) (Elastin microfibril
           interfacer 5)
          Length = 758

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 113 WRTCPGLLLARCPPRQQHCQEEKIGPHCQAPKXLCPI 3
           WR CPGL    CP   +H  +    P  Q P+   P+
Sbjct: 117 WRCCPGLTGESCP---EHLTDHGATPPHQEPEPQIPL 150

>ZN541_HUMAN (Q9H0D2) Zinc finger protein 541|
          Length = 792

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 93  QPRTGP-PRMDAPVGPSHDECRSGP-N*QSSKTPMIRRKQPP 212
           +P  GP P+   P+ P+ D   +GP N ++  +P  RRK  P
Sbjct: 37  RPLQGPWPQQPPPLAPAVDSLHAGPGNPEAEGSPARRRKTTP 78

>YD72_SCHPO (Q10327) Hypothetical protein C32A11.02c in chromosome I|
          Length = 851

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 176 IQNAHDSSKATAESNHTSINTHNRHSTLRKLA-PAANLNKKSQSNTCSLT 322
           I N H SSK   + +   +  H  ++ L  +  P+ NL +  +    +L+
Sbjct: 650 ISNLHKSSKEKGKDSQVRVALHKENTALNNIVLPSGNLQRSEEKRRAALS 699

>CHIB_ARATH (P19171) Basic endochitinase B precursor (EC 3.2.1.14)|
           (Pathogenesis-related protein 3) (PR-3) (AtChiB)
          Length = 335

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 228 LVWLDSAVAFDESWAFWMIVSWGRCGIHRVMARQGRPSVED 106
           LV  D+ +AF  +  FWM     +   H V+A Q +PS  D
Sbjct: 226 LVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDAD 266

>CHI2_ORYSA (P25765) Basic endochitinase 2 precursor (EC 3.2.1.14)|
          Length = 336

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 228 LVWLDSAVAFDESWAFWMIVSWGRCGIHRVMARQGRPSVED 106
           LV  D+ V+FD ++ FWM     +   + V   Q  PS +D
Sbjct: 219 LVASDATVSFDTAFWFWMTPQSPKPSCNAVATGQWTPSADD 259

>YIIR_ECOLI (P0AF34) Hypothetical protein yiiR|
          Length = 146

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
 Frame = -3

Query: 276 AGASFLSVE-CRLCVFILVWLDSAVAFDE--------SWAFWMIVSW 163
           AG + L ++    C+  L+W  +AV            +WAF MIV+W
Sbjct: 37  AGKNLLDIQTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIVAW 83

>YIIR_ECO57 (P0AF35) Hypothetical protein yiiR|
          Length = 146

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
 Frame = -3

Query: 276 AGASFLSVE-CRLCVFILVWLDSAVAFDE--------SWAFWMIVSW 163
           AG + L ++    C+  L+W  +AV            +WAF MIV+W
Sbjct: 37  AGKNLLDIQTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIVAW 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,312,827
Number of Sequences: 219361
Number of extensions: 1221755
Number of successful extensions: 3399
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3390
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)