ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27n09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471919.1| Oryza sativa (japonica cultivar-group), predic... 232 7e-58
2ref|XM_471937.1| Oryza sativa (japonica cultivar-group), predic... 232 7e-58
3dbj|AK066236.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 7e-58
4gb|BT018601.1| Zea mays clone EL01N0449D04.d mRNA sequence 98 3e-17
5emb|AL731644.4|OSJN00287 Oryza sativa genomic DNA, chromosome 4,... 88 2e-14
6emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4,... 88 2e-14
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
8dbj|AK120870.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
9ref|XM_465595.1| Oryza sativa (japonica cultivar-group), mRNA 80 6e-12
10dbj|AK101185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
11gb|BT024018.1| Zea mays clone EL01N0561H01 mRNA sequence 58 2e-05
12emb|BX569684.2|OSJN00290 Oryza sativa genomic DNA, chromosome 4,... 56 9e-05
13emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4,... 56 9e-05
14emb|AL731631.2|OSJN00279 Oryza sativa genomic DNA, chromosome 4,... 56 9e-05
15ref|XM_471934.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
16ref|XM_471915.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
17emb|BX842603.2|OSJN00300 Oryza sativa genomic DNA, chromosome 4,... 50 0.005
18dbj|AK109756.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
19emb|AL391834.8| Human DNA sequence from clone RP11-513M16 on chr... 48 0.021
20gb|AY110238.1| Zea mays CL5383_1 mRNA sequence 46 0.084
21ref|NM_111142.2| Arabidopsis thaliana pepsin A AT3G02740 mRNA, c... 44 0.33
22ref|XM_465596.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.33
23gb|BT000270.1| Arabidopsis thaliana putative aspartyl protease (... 44 0.33
24gb|AY099617.1| Arabidopsis thaliana putative aspartyl protease (... 44 0.33
25gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, co... 44 0.33
26gb|AC021736.9| Homo sapiens chromosome 8, clone RP11-115J16, com... 44 0.33
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
28emb|BX822425.1|CNS0A5WI Arabidopsis thaliana Full-length cDNA Co... 44 0.33
29gb|AY088014.1| Arabidopsis thaliana clone 40409 mRNA, complete s... 44 0.33
30dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
31dbj|AP005065.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
32dbj|AK071189.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
33gb|AC147663.3| Pan troglodytes BAC clone CH251-304A22 from Y, co... 42 1.3
34gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 42 1.3
35gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, comp... 42 1.3
36dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, ... 42 1.3
37gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.3
38dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, ... 42 1.3
39gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 40 5.2
40gb|AC121144.11| Mus musculus chromosome 3, clone RP24-202D19, co... 40 5.2
41gb|AC113510.9| Mus musculus chromosome 5, clone RP23-378O9, comp... 40 5.2
42gb|AC112938.11| Mus musculus chromosome 5, clone RP24-72E12, com... 40 5.2
43gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, comp... 40 5.2
44gb|AC024876.1| Caenorhabditis elegans cosmid Y94H6A, complete se... 40 5.2
45gb|AC165263.2| Mus musculus BAC clone RP23-21E23 from chromosome... 40 5.2
46gb|AF438419.1| Lactobacillus sakei plasmid pRV500, complete sequ... 40 5.2
47emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 o... 40 5.2
48emb|BX649538.4| Zebrafish DNA sequence from clone CH211-239N21 i... 40 5.2
49ref|XM_230555.3| PREDICTED: Rattus norvegicus similar to KIAA091... 40 5.2
50gb|AF525804.1| Chlamys farreri ribosomal protein L7a mRNA, parti... 40 5.2
51gb|AC133939.4| Mus musculus BAC clone RP23-402F1 from chromosome... 40 5.2 
>ref|XM_471919.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2463

 Score =  232 bits (117), Expect = 7e-58
 Identities = 194/220 (88%)
 Strand = Plus / Minus

                                                                        
Query: 171  ctccatcccgaggagatatcgtgcgcatcaactgtgtatgttgcccctgtcttttcatcc 230
            |||||||| |||||||| | ||| || ||||| ||||||||||||||||||| |||||||
Sbjct: 2396 ctccatcctgaggagatgttgtgagcgtcaacagtgtatgttgcccctgtctgttcatcc 2337

                                                                        
Query: 231  ttaactttcatgctagaggagcagttgtaatcggcccatccaacgacttggttttccaag 290
            |||| ||| ||||||||||| |||||||| || | ||| |||| |||||| ||||||| |
Sbjct: 2336 ttaattttaatgctagaggaacagttgtactcagtccagccaatgacttgattttccagg 2277

                                                                        
Query: 291  tcatagacaaccaccttatttgaaaggaccagatcttctagaagcaccatatcctttcca 350
            ||||||||||| | |||||||||||||||||||||| | | |||||||||| |||| |||
Sbjct: 2276 tcatagacaactaacttatttgaaaggaccagatctcccaaaagcaccatacccttccca 2217

                                                    
Query: 351  tcctttgattgcaatccaccattttggaatncaacacaat 390
            ||||||||||| |||||||||||||||||| |||||||||
Sbjct: 2216 tcctttgattgtaatccaccattttggaatccaacacaat 2177
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>ref|XM_471937.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1485

 Score =  232 bits (117), Expect = 7e-58
 Identities = 194/220 (88%)
 Strand = Plus / Minus

                                                                        
Query: 171  ctccatcccgaggagatatcgtgcgcatcaactgtgtatgttgcccctgtcttttcatcc 230
            |||||||| |||||||| | ||| || ||||| ||||||||||||||||||| |||||||
Sbjct: 1418 ctccatcctgaggagatgttgtgagcgtcaacagtgtatgttgcccctgtctgttcatcc 1359

                                                                        
Query: 231  ttaactttcatgctagaggagcagttgtaatcggcccatccaacgacttggttttccaag 290
            |||| ||| ||||||||||| |||||||| || | ||| |||| |||||| ||||||| |
Sbjct: 1358 ttaattttaatgctagaggaacagttgtactcagtccagccaatgacttgattttccagg 1299

                                                                        
Query: 291  tcatagacaaccaccttatttgaaaggaccagatcttctagaagcaccatatcctttcca 350
            ||||||||||| | |||||||||||||||||||||| | | |||||||||| |||| |||
Sbjct: 1298 tcatagacaactaacttatttgaaaggaccagatctcccaaaagcaccatacccttccca 1239

                                                    
Query: 351  tcctttgattgcaatccaccattttggaatncaacacaat 390
            ||||||||||| |||||||||||||||||| |||||||||
Sbjct: 1238 tcctttgattgtaatccaccattttggaatccaacacaat 1199
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>dbj|AK066236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057F13, full
            insert sequence
          Length = 4559

 Score =  232 bits (117), Expect = 7e-58
 Identities = 194/220 (88%)
 Strand = Plus / Minus

                                                                        
Query: 171  ctccatcccgaggagatatcgtgcgcatcaactgtgtatgttgcccctgtcttttcatcc 230
            |||||||| |||||||| | ||| || ||||| ||||||||||||||||||| |||||||
Sbjct: 4175 ctccatcctgaggagatgttgtgagcgtcaacagtgtatgttgcccctgtctgttcatcc 4116

                                                                        
Query: 231  ttaactttcatgctagaggagcagttgtaatcggcccatccaacgacttggttttccaag 290
            |||| ||| ||||||||||| |||||||| || | ||| |||| |||||| ||||||| |
Sbjct: 4115 ttaattttaatgctagaggaacagttgtactcagtccagccaatgacttgattttccagg 4056

                                                                        
Query: 291  tcatagacaaccaccttatttgaaaggaccagatcttctagaagcaccatatcctttcca 350
            ||||||||||| | |||||||||||||||||||||| | | |||||||||| |||| |||
Sbjct: 4055 tcatagacaactaacttatttgaaaggaccagatctcccaaaagcaccatacccttccca 3996

                                                    
Query: 351  tcctttgattgcaatccaccattttggaatncaacacaat 390
            ||||||||||| |||||||||||||||||| |||||||||
Sbjct: 3995 tcctttgattgtaatccaccattttggaatccaacacaat 3956
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>gb|BT018601.1| Zea mays clone EL01N0449D04.d mRNA sequence
          Length = 1634

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 127/153 (83%)
 Strand = Plus / Minus

                                                                        
Query: 228  tccttaactttcatgctagaggagcagttgtaatcggcccatccaacgacttggttttcc 287
            ||||||| ||| ||||| || || |||||||| || | ||| |||| |||| | ||||||
Sbjct: 1212 tccttaattttaatgctcgacgaacagttgtagtcagtccacccaatgactcgattttcc 1153

                                                                        
Query: 288  aagtcatagacaaccaccttatttgaaaggaccagatcttctagaagcaccatatccttt 347
            |||||||||| ||||| ||| || |||||||| |||||| | | |||||| || ||||||
Sbjct: 1152 aagtcatagataaccaacttgttggaaaggacaagatctcccataagcacaatgtccttt 1093

                                             
Query: 348  ccatcctttgattgcaatccaccattttggaat 380
            ||||||||||| ||  || ||||||||||||||
Sbjct: 1092 ccatcctttgactgtgatgcaccattttggaat 1060
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>emb|AL731644.4|OSJN00287 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011K22,
             complete sequence
          Length = 145766

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                        
Query: 332   aagcaccatatcctttccatcctttgattgcaatccaccattttggaatncaacacaat 390
             |||||||||| |||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 55646 aagcaccatacccttcccatcctttgattgtaatccaccattttggaatccaacacaat 55704



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 171   ctccatcccgaggagatatcgtgcgcatcaactgtgtatgttgcccctgtcttttcatcc 230
             |||||||| |||||||| | ||| || ||||| ||||||||||||||||||| |||||||
Sbjct: 55042 ctccatcctgaggagatgttgtgagcgtcaacagtgtatgttgcccctgtctgttcatcc 55101

                                 
Query: 231   ttaactttcatgctagagga 250
             |||| ||| |||||||||||
Sbjct: 55102 ttaattttaatgctagagga 55121



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 252   cagttgtaatcggcccatccaacgacttggttttccaagtcatagacaaccaccttattt 311
             |||||||| || | ||| |||| |||||| ||||||| |||||||||||| | |||||||
Sbjct: 55457 cagttgtactcagtccagccaatgacttgattttccaggtcatagacaactaacttattt 55516

                            
Query: 312   gaaaggaccagatct 326
             |||||||||||||||
Sbjct: 55517 gaaaggaccagatct 55531



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 277   cttggttttccaagtcatagacaaccaccttatttga 313
             |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 16856 cttgcttttccatgtcatagacgaccaccttatttga 16892
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>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08,
             complete sequence
          Length = 130521

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                        
Query: 332   aagcaccatatcctttccatcctttgattgcaatccaccattttggaatncaacacaat 390
             |||||||||| |||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 45617 aagcaccatacccttcccatcctttgattgtaatccaccattttggaatccaacacaat 45675



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 171   ctccatcccgaggagatatcgtgcgcatcaactgtgtatgttgcccctgtcttttcatcc 230
             |||||||| |||||||| | ||| || ||||| ||||||||||||||||||| |||||||
Sbjct: 45013 ctccatcctgaggagatgttgtgagcgtcaacagtgtatgttgcccctgtctgttcatcc 45072

                                 
Query: 231   ttaactttcatgctagagga 250
             |||| ||| |||||||||||
Sbjct: 45073 ttaattttaatgctagagga 45092



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 252   cagttgtaatcggcccatccaacgacttggttttccaagtcatagacaaccaccttattt 311
             |||||||| || | ||| |||| |||||| ||||||| |||||||||||| | |||||||
Sbjct: 45428 cagttgtactcagtccagccaatgacttgattttccaggtcatagacaactaacttattt 45487

                            
Query: 312   gaaaggaccagatct 326
             |||||||||||||||
Sbjct: 45488 gaaaggaccagatct 45502



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 277  cttggttttccaagtcatagacaaccaccttatttga 313
            |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 6885 cttgcttttccatgtcatagacgaccaccttatttga 6921
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 332      aagcaccatatcctttccatcctttgattgcaatccaccattttggaatncaacacaat 390
                |||||||||| |||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 15859052 aagcaccatacccttcccatcctttgattgtaatccaccattttggaatccaacacaat 15859110



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                            
Query: 171      ctccatcccgaggagatatcgtgcgcatcaactgtgtatgttgcccctgtcttttcatcc 230
                |||||||| |||||||| | ||| || ||||| ||||||||||||||||||| |||||||
Sbjct: 15858448 ctccatcctgaggagatgttgtgagcgtcaacagtgtatgttgcccctgtctgttcatcc 15858507

                                    
Query: 231      ttaactttcatgctagagga 250
                |||| ||| |||||||||||
Sbjct: 15858508 ttaattttaatgctagagga 15858527



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 332      aagcaccatatcctttccatcctttgattgcaatccaccattttggaatncaacacaat 390
                |||||||||| |||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 15725716 aagcaccatacccttcccatcctttgattgtaatccaccattttggaatccaacacaat 15725774



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                            
Query: 171      ctccatcccgaggagatatcgtgcgcatcaactgtgtatgttgcccctgtcttttcatcc 230
                |||||||| |||||||| | ||| || ||||| ||||||||||||||||||| |||||||
Sbjct: 15725112 ctccatcctgaggagatgttgtgagcgtcaacagtgtatgttgcccctgtctgttcatcc 15725171

                                    
Query: 231      ttaactttcatgctagagga 250
                |||| ||| |||||||||||
Sbjct: 15725172 ttaattttaatgctagagga 15725191



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                            
Query: 252      cagttgtaatcggcccatccaacgacttggttttccaagtcatagacaaccaccttattt 311
                |||||||| || | ||| |||| |||||| ||||||| |||||||||||| | |||||||
Sbjct: 15858863 cagttgtactcagtccagccaatgacttgattttccaggtcatagacaactaacttattt 15858922

                               
Query: 312      gaaaggaccagatct 326
                |||||||||||||||
Sbjct: 15858923 gaaaggaccagatct 15858937



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                            
Query: 252      cagttgtaatcggcccatccaacgacttggttttccaagtcatagacaaccaccttattt 311
                |||||||| || | ||| |||| |||||| ||||||| |||||||||||| | |||||||
Sbjct: 15725527 cagttgtactcagtccagccaatgacttgattttccaggtcatagacaactaacttattt 15725586

                               
Query: 312      gaaaggaccagatct 326
                |||||||||||||||
Sbjct: 15725587 gaaaggaccagatct 15725601



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 211      ttgcccctgtcttttcatccttaactttcatgctagagga 250
                |||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 15458696 ttgcccctgtcttttcgtccttaattttaatgctagagga 15458735



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 277      cttggttttccaagtcatagacaaccaccttatttga 313
                |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 15820320 cttgcttttccatgtcatagacgaccaccttatttga 15820356



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 277      cttggttttccaagtcatagacaaccaccttatttga 313
                |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 15686926 cttgcttttccatgtcatagacgaccaccttatttga 15686962



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 277      cttggttttccaagtcatagacaaccaccttatttga 313
                |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 15473430 cttgcttttccatgtcatagacgaccaccttatttga 15473466
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>dbj|AK120870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026B03, full
            insert sequence
          Length = 1689

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 93/110 (84%)
 Strand = Plus / Minus

                                                                        
Query: 204  gtgtatgttgcccctgtcttttcatccttaactttcatgctagaggagcagttgtaatcg 263
            |||||| ||||||| |||||||| ||||||| ||| | ||||||||| |||||||  || 
Sbjct: 1430 gtgtatattgcccccgtcttttcgtccttaattttaacgctagaggaacagttgtgctct 1371

                                                              
Query: 264  gcccatccaacgacttggttttccaagtcatagacaaccaccttatttga 313
            | ||| |||| | |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 1370 gtccagccaatggcttgcttttccatgtcatagacgaccaccttatttga 1321
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>ref|XM_465595.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1956

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 115/140 (82%)
 Strand = Plus / Minus

                                                                        
Query: 240  atgctagaggagcagttgtaatcggcccatccaacgacttggttttccaagtcatagaca 299
            ||||| ||||||||||||||||| ||||| || |   |||| ||||| || ||||| | |
Sbjct: 1528 atgctggaggagcagttgtaatctgcccacccgatagcttgattttctaaatcataaaga 1469

                                                                        
Query: 300  accaccttatttgaaaggaccagatcttctagaagcaccatatcctttccatcctttgat 359
            |||| |||||||||||| || |||||| | | |||||||||||| || |||||||| | |
Sbjct: 1468 accagcttatttgaaagcactagatctcccaaaagcaccatatctttcccatccttggtt 1409

                                
Query: 360  tgcaatccaccattttggaa 379
            || | |||||| ||||||||
Sbjct: 1408 tgtactccaccgttttggaa 1389
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>dbj|AK101185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029J01, full
            insert sequence
          Length = 1956

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 115/140 (82%)
 Strand = Plus / Minus

                                                                        
Query: 240  atgctagaggagcagttgtaatcggcccatccaacgacttggttttccaagtcatagaca 299
            ||||| ||||||||||||||||| ||||| || |   |||| ||||| || ||||| | |
Sbjct: 1528 atgctggaggagcagttgtaatctgcccacccgatagcttgattttctaaatcataaaga 1469

                                                                        
Query: 300  accaccttatttgaaaggaccagatcttctagaagcaccatatcctttccatcctttgat 359
            |||| |||||||||||| || |||||| | | |||||||||||| || |||||||| | |
Sbjct: 1468 accagcttatttgaaagcactagatctcccaaaagcaccatatctttcccatccttggtt 1409

                                
Query: 360  tgcaatccaccattttggaa 379
            || | |||||| ||||||||
Sbjct: 1408 tgtactccaccgttttggaa 1389
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>gb|BT024018.1| Zea mays clone EL01N0561H01 mRNA sequence
          Length = 1640

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 219  gtcttttcatccttaactttcatgctagaggagcagttgtaatcggcccatccaacgact 278
            ||||| ||||||| || ||| ||||| |||||||||||||| || | ||||||||  |||
Sbjct: 1418 gtcttgtcatcctcaattttaatgctcgaggagcagttgtagtctgtccatccaataact 1359

                             
Query: 279  tggttttccaagtcata 295
            |  ||||||||||||||
Sbjct: 1358 tctttttccaagtcata 1342
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>emb|BX569684.2|OSJN00290 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0046K02,
           complete sequence
          Length = 109366

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 211 ttgcccctgtcttttcatccttaactttcatgctagagga 250
           |||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 249 ttgcccctgtcttttcgtccttaattttaatgctagagga 288



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 277   cttggttttccaagtcatagacaaccaccttatttga 313
             |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 14983 cttgcttttccatgtcatagacgaccaccttatttga 15019
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>emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063G07,
              complete sequence
          Length = 157622

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 211    ttgcccctgtcttttcatccttaactttcatgctagagga 250
              |||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 147580 ttgcccctgtcttttcgtccttaattttaatgctagagga 147619
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>emb|AL731631.2|OSJN00279 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0112E13,
             complete sequence
          Length = 133197

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 211   ttgcccctgtcttttcatccttaactttcatgctagagga 250
             |||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 82763 ttgcccctgtcttttcgtccttaattttaatgctagagga 82802



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 277   cttggttttccaagtcatagacaaccaccttatttga 313
             |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 97497 cttgcttttccatgtcatagacgaccaccttatttga 97533
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>ref|XM_471934.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1296

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 277  cttggttttccaagtcatagacaaccaccttatttga 313
            |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 1204 cttgcttttccatgtcatagacgaccaccttatttga 1168
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>ref|XM_471915.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1296

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 277  cttggttttccaagtcatagacaaccaccttatttga 313
            |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 1204 cttgcttttccatgtcatagacgaccaccttatttga 1168
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>emb|BX842603.2|OSJN00300 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1159F04, complete
              sequence
          Length = 158330

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                   
Query: 277    cttggttttccaagtcatagacaaccaccttatttga 313
              |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 146915 cttgcttttccatgtcatagacgaccaccttatttga 146951
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>dbj|AK109756.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-G03, full
            insert sequence
          Length = 1986

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 277  cttggttttccaagtcatagacaaccaccttatttga 313
            |||| ||||||| ||||||||| ||||||||||||||
Sbjct: 1312 cttgcttttccatgtcatagacgaccaccttatttga 1276
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>emb|AL391834.8| Human DNA sequence from clone RP11-513M16 on chromosome 9, complete
             sequence
          Length = 112713

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 297   acaaccaccttatttgaaaggacc 320
             ||||||||||||||||||||||||
Sbjct: 40700 acaaccaccttatttgaaaggacc 40723
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>gb|AY110238.1| Zea mays CL5383_1 mRNA sequence
          Length = 1129

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 219 gtcttttcatccttaactttcatgctagaggagcagttgtaatcggcccatccaa 273
           ||||| ||||||| || ||| ||||| |||||||||||||| || | ||||||||
Sbjct: 578 gtcttgtcatcctcaattttaatgctcgaggagcagttgtagtctgtccatccaa 632
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>ref|NM_111142.2| Arabidopsis thaliana pepsin A AT3G02740 mRNA, complete cds
          Length = 1596

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 249  gagcagttgtaatcggcccatccaacgacttggttttc 286
            |||||||||| || || |||||||| ||||||||||||
Sbjct: 1370 gagcagttgtgattggtccatccaatgacttggttttc 1333
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>ref|XM_465596.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1516

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 180  gaggagatatcgtgcgcatcaactgtgtatgttg 213
            ||||||||||||| ||||| ||| ||||||||||
Sbjct: 1123 gaggagatatcgtccgcattaacagtgtatgttg 1090



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 332 aagcaccatatcctttccatcctttgattgcaatccaccattttggaa 379
           |||||||||||| || |||||||| | ||| | |||||| ||||||||
Sbjct: 706 aagcaccatatctttcccatccttggtttgtactccaccgttttggaa 659
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>gb|BT000270.1| Arabidopsis thaliana putative aspartyl protease (At3g02740) mRNA,
           complete cds
          Length = 995

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 249 gagcagttgtaatcggcccatccaacgacttggttttc 286
           |||||||||| || || |||||||| ||||||||||||
Sbjct: 815 gagcagttgtgattggtccatccaatgacttggttttc 778
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>gb|AY099617.1| Arabidopsis thaliana putative aspartyl protease (At3g02740) mRNA,
            complete cds
          Length = 1656

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 249  gagcagttgtaatcggcccatccaacgacttggttttc 286
            |||||||||| || || |||||||| ||||||||||||
Sbjct: 1431 gagcagttgtgattggtccatccaatgacttggttttc 1394
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>gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, complete sequence
          Length = 196152

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 280  ggttttccaagtcatagacaac 301
            ||||||||||||||||||||||
Sbjct: 2299 ggttttccaagtcatagacaac 2320
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>gb|AC021736.9| Homo sapiens chromosome 8, clone RP11-115J16, complete sequence
          Length = 158806

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 280   ggttttccaagtcatagacaac 301
             ||||||||||||||||||||||
Sbjct: 24568 ggttttccaagtcatagacaac 24547
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 180      gaggagatatcgtgcgcatcaactgtgtatgttg 213
                ||||||||||||| ||||| ||| ||||||||||
Sbjct: 16215108 gaggagatatcgtccgcattaacagtgtatgttg 16215141



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 332      aagcaccatatcctttccatcctttgattgcaatccaccattttggaa 379
                |||||||||||| || |||||||| | ||| | |||||| ||||||||
Sbjct: 16215525 aagcaccatatctttcccatccttggtttgtactccaccgttttggaa 16215572
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>emb|BX822425.1|CNS0A5WI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB37ZB01 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1501

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 249  gagcagttgtaatcggcccatccaacgacttggttttc 286
            |||||||||| || || |||||||| ||||||||||||
Sbjct: 1352 gagcagttgtgattggtccatccaatgacttggttttc 1315
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>gb|AY088014.1| Arabidopsis thaliana clone 40409 mRNA, complete sequence
          Length = 1594

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 249  gagcagttgtaatcggcccatccaacgacttggttttc 286
            |||||||||| || || |||||||| ||||||||||||
Sbjct: 1370 gagcagttgtgattggtccatccaatgacttggttttc 1333
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>dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0487H05
          Length = 176057

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 180   gaggagatatcgtgcgcatcaactgtgtatgttg 213
             ||||||||||||| ||||| ||| ||||||||||
Sbjct: 49595 gaggagatatcgtccgcattaacagtgtatgttg 49628



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 332   aagcaccatatcctttccatcctttgattgcaatccaccattttggaa 379
             |||||||||||| || |||||||| | ||| | |||||| ||||||||
Sbjct: 50012 aagcaccatatctttcccatccttggtttgtactccaccgttttggaa 50059
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>dbj|AP005065.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0046H03
          Length = 137020

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 180    gaggagatatcgtgcgcatcaactgtgtatgttg 213
              ||||||||||||| ||||| ||| ||||||||||
Sbjct: 107437 gaggagatatcgtccgcattaacagtgtatgttg 107470



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                              
Query: 332    aagcaccatatcctttccatcctttgattgcaatccaccattttggaa 379
              |||||||||||| || |||||||| | ||| | |||||| ||||||||
Sbjct: 107854 aagcaccatatctttcccatccttggtttgtactccaccgttttggaa 107901
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>dbj|AK071189.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086G16, full
            insert sequence
          Length = 1514

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 180  gaggagatatcgtgcgcatcaactgtgtatgttg 213
            ||||||||||||| ||||| ||| ||||||||||
Sbjct: 1121 gaggagatatcgtccgcattaacagtgtatgttg 1088



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 332 aagcaccatatcctttccatcctttgattgcaatccaccattttggaa 379
           |||||||||||| || |||||||| | ||| | |||||| ||||||||
Sbjct: 704 aagcaccatatctttcccatccttggtttgtactccaccgttttggaa 657
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>gb|AC147663.3| Pan troglodytes BAC clone CH251-304A22 from Y, complete sequence
          Length = 162854

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 358    attgcaatccaccattttgga 378
              |||||||||||||||||||||
Sbjct: 145159 attgcaatccaccattttgga 145139
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 162    cactgaagtctccatcccgag 182
              |||||||||||||||||||||
Sbjct: 207742 cactgaagtctccatcccgag 207762
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>gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, complete sequence
          Length = 163480

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 358   attgcaatccaccattttgga 378
             |||||||||||||||||||||
Sbjct: 96857 attgcaatccaccattttgga 96837
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>dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, complete sequence
          Length = 190308

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 358    attgcaatccaccattttgga 378
              |||||||||||||||||||||
Sbjct: 157329 attgcaatccaccattttgga 157349
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 358      attgcaatccaccattttgga 378
                |||||||||||||||||||||
Sbjct: 17248351 attgcaatccaccattttgga 17248331
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>dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, complete sequences
          Length = 163477

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 358   attgcaatccaccattttgga 378
             |||||||||||||||||||||
Sbjct: 66624 attgcaatccaccattttgga 66644
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    cctgtcttttcatccttaac 235
              ||||||||||||||||||||
Sbjct: 759434 cctgtcttttcatccttaac 759415
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>gb|AC121144.11| Mus musculus chromosome 3, clone RP24-202D19, complete sequence
          Length = 161989

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   catatcctttccatcctttg 357
             ||||||||||||||||||||
Sbjct: 72929 catatcctttccatcctttg 72948
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>gb|AC113510.9| Mus musculus chromosome 5, clone RP23-378O9, complete sequence
          Length = 171806

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    ttttgttgtacatcagagtt 105
             ||||||||||||||||||||
Sbjct: 24091 ttttgttgtacatcagagtt 24110
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>gb|AC112938.11| Mus musculus chromosome 5, clone RP24-72E12, complete sequence
          Length = 235924

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     aaatgaattttcatcagagt 85
              ||||||||||||||||||||
Sbjct: 218234 aaatgaattttcatcagagt 218253
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>gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, complete sequence
          Length = 157594

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    ttttgttgtacatcagagtt 105
             ||||||||||||||||||||
Sbjct: 93029 ttttgttgtacatcagagtt 93048
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>gb|AC024876.1| Caenorhabditis elegans cosmid Y94H6A, complete sequence
          Length = 78089

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 67    aatgaattttcatcagagtttttg 90
             ||||| ||||||||||||||||||
Sbjct: 73781 aatgatttttcatcagagtttttg 73758
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>gb|AC165263.2| Mus musculus BAC clone RP23-21E23 from chromosome 13, complete sequence
          Length = 180505

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   gaaaattaagtaactgcaca 126
             ||||||||||||||||||||
Sbjct: 41399 gaaaattaagtaactgcaca 41418
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>gb|AF438419.1| Lactobacillus sakei plasmid pRV500, complete sequence
          Length = 12959

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   agagtttttgttgtacatca 100
            ||||||||||||||||||||
Sbjct: 5174 agagtttttgttgtacatca 5193
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>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete
             sequence
          Length = 176947

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    acatttcctctttgagaaaa 57
             ||||||||||||||||||||
Sbjct: 26704 acatttcctctttgagaaaa 26685
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>emb|BX649538.4| Zebrafish DNA sequence from clone CH211-239N21 in linkage group 3,
             complete sequence
          Length = 147441

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 296   gacaaccaccttatttgaaaggac 319
             ||||| ||||||||||||||||||
Sbjct: 36766 gacaagcaccttatttgaaaggac 36743
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>ref|XM_230555.3| PREDICTED: Rattus norvegicus similar to KIAA0912 protein (predicted)
            (LOC311391), mRNA
          Length = 7377

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  aacaacagaatcaggaactt 157
            ||||||||||||||||||||
Sbjct: 2912 aacaacagaatcaggaactt 2931
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>gb|AF525804.1| Chlamys farreri ribosomal protein L7a mRNA, partial sequence
          Length = 422

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 55  aaagagcaatcaaatgaattttca 78
           ||||||||| ||||||||||||||
Sbjct: 209 aaagagcaaacaaatgaattttca 186
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>gb|AC133939.4| Mus musculus BAC clone RP23-402F1 from chromosome 5, complete
            sequence
          Length = 193121

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 66   aaatgaattttcatcagagt 85
            ||||||||||||||||||||
Sbjct: 6134 aaatgaattttcatcagagt 6153


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,993,984
Number of Sequences: 3902068
Number of extensions: 3993984
Number of successful extensions: 76711
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76523
Number of HSP's gapped (non-prelim): 186
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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