ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27n08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018989.1| Zea mays clone Contig451.F mRNA sequence 153 6e-34
2ref|NM_193187.1| Oryza sativa (japonica cultivar-group), predic... 147 4e-32
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
4dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
5ref|NM_191286.1| Oryza sativa (japonica cultivar-group), predic... 139 9e-30
6dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
7dbj|AK102373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
8dbj|AK060989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
9gb|AY596543.1| Saccharum officinarum clone SCCCCL4007B07, comple... 121 2e-24
10gb|AY111554.1| Zea mays CL1493_2 mRNA sequence 100 7e-18
11gb|AY108251.1| Zea mays PCO077043 mRNA sequence 92 2e-15
12gb|AY106885.1| Zea mays PCO120977 mRNA sequence 92 2e-15
13ref|XM_464560.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
15dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
16dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
17dbj|AK106819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
18gb|AC145905.4| Pan troglodytes BAC clone RP43-9I21 from 7, compl... 44 0.38
19gb|AC146159.2| Pan troglodytes BAC clone RP43-36O19 from 7, comp... 44 0.38
20gb|AC018664.11| Homo sapiens chromosome 7 clone RP11-109E9, comp... 44 0.38
21gb|AC008080.1|AC008080 Homo sapiens clone RP11-89N17 from 7p14-1... 44 0.38
22dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.5
23gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome... 40 5.9
24gb|AC153597.13| Mus musculus 6 BAC RP23-18K9 (Roswell Park Cance... 40 5.9
25emb|Z71183.2|HSN28H9 Human DNA sequence from clone LL22NC03-28H9... 40 5.9
26gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, com... 40 5.9
27gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosom... 40 5.9
28gb|AE012042.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.9
29gb|AC080088.5| Homo sapiens BAC clone RP11-716B14 from 4, comple... 40 5.9
30gb|AC078953.20| Homo sapiens 3 BAC RP11-370M22 (Roswell Park Can... 40 5.9
31ref|XM_690191.1| PREDICTED: Danio rerio similar to phosphodieste... 40 5.9
32dbj|AK047278.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 5.9
33gb|AC146083.5| Pan troglodytes BAC clone RP43-56I21 from chromos... 40 5.9
34gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7,... 40 5.9
35dbj|AB020754.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.9
36emb|BX255903.3| Zebrafish DNA sequence from clone CH211-242B18 i... 40 5.9
37emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 i... 40 5.9
38emb|AL929033.7| Mouse DNA sequence from clone RP23-427N17 on chr... 40 5.9
39emb|AL845277.11| Mouse DNA sequence from clone RP23-35J6 on chro... 40 5.9 
>gb|BT018989.1| Zea mays clone Contig451.F mRNA sequence
          Length = 1213

 Score =  153 bits (77), Expect = 6e-34
 Identities = 128/145 (88%)
 Strand = Plus / Minus

                                                                       
Query: 297 ctcgccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggc 356
           ||||||||||||||||| ||    ||||||||||| || |||||||||||||||||||||
Sbjct: 829 ctcgccttcaacccagccgcggtgttcaagccccatacgcggacgtcgtcgatcaccggc 770

                                                                       
Query: 357 ccacacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacg 416
           || |||||||||||||||||||| || |||||||||||||| |||||||||| ||| |||
Sbjct: 769 ccgcacagcgagctgtggtcgtcactcctcgtgttgtagtacacgctgtagaacgccacg 710

                                    
Query: 417 cgtgacctctcggcgcgcgctgtga 441
           |||| |||||| || ||||| ||||
Sbjct: 709 cgtgtcctctcagcacgcgcagtga 685



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 6    gagatgaacttggaacaattcttacatctcacattacaagc 46
            |||||||||||| |||| |||| |||||||| |||||||||
Sbjct: 1158 gagatgaacttgtaacagttctaacatctcatattacaagc 1118
to top
>ref|NM_193187.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1017

 Score =  147 bits (74), Expect = 4e-32
 Identities = 125/142 (88%)
 Strand = Plus / Minus

                                                                       
Query: 300 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
           ||||||||||||||||| ||||||||||||||||| || || || |||||||| ||||||
Sbjct: 962 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 903

                                                                       
Query: 360 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 419
           || |||||||||||||||||||||||||||||||| || |||||||||| ||| || || 
Sbjct: 902 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacgctgtagaacgccactcgc 843

                                 
Query: 420 gacctctcggcgcgcgctgtga 441
           | |||||| || || |||||||
Sbjct: 842 gtcctctcagctcgtgctgtga 821
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  147 bits (74), Expect = 4e-32
 Identities = 125/142 (88%)
 Strand = Plus / Plus

                                                                            
Query: 300      gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
                ||||||||||||||||| ||||||||||||||||| || || || |||||||| ||||||
Sbjct: 19126425 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 19126484

                                                                            
Query: 360      cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 419
                || |||||||||||||||||||||||||||||||| || |||||||||| ||| || || 
Sbjct: 19126485 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacgctgtagaacgccactcgc 19126544

                                      
Query: 420      gacctctcggcgcgcgctgtga 441
                | |||||| || || |||||||
Sbjct: 19126545 gtcctctcagctcgtgctgtga 19126566



 Score =  139 bits (70), Expect = 9e-30
 Identities = 124/142 (87%)
 Strand = Plus / Minus

                                                                            
Query: 300      gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
                ||||||||||||||||| ||||||||||||||||| || || || |||||||| ||||||
Sbjct: 31746285 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 31746226

                                                                            
Query: 360      cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 419
                || |||||||||||||||||||||||||||||||| || || ||||||| ||| || || 
Sbjct: 31746225 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacactgtagaacgctacccgc 31746166

                                      
Query: 420      gacctctcggcgcgcgctgtga 441
                | |||||| || || |||||||
Sbjct: 31746165 gtcctctcagctcgtgctgtga 31746144



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 120/145 (82%), Gaps = 10/145 (6%)
 Strand = Plus / Minus

                                                                            
Query: 74       atggcttgctactttcagaatcacacaagaaagcaacag-aacaaccatttatagctact 132
                ||||| || ||||||| |||||||| ||||||||||||| |||| ||||  |||||| | 
Sbjct: 31746534 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 31746475

                                                                            
Query: 133      ggtagcttgagcctaag--------ctcacattactcaatctcatagaaacctcaggctt 184
                |||||||| ||||||||        |||||||||||||| || |||||||| ||| ||||
Sbjct: 31746474 ggtagctttagcctaagctcacaatctcacattactcaacctaatagaaacttcaagctt 31746415

                                         
Query: 185      actaacaaaactaagtggcctcctc 209
                |||| ||||||| ||||||||||||
Sbjct: 31746414 actaccaaaact-agtggcctcctc 31746391



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 120/145 (82%), Gaps = 10/145 (6%)
 Strand = Plus / Plus

                                                                            
Query: 74       atggcttgctactttcagaatcacacaagaaagcaacagaa-caaccatttatagctact 132
                ||||| || ||||||| |||||||| ||||||||||||||| || ||||  |||||| | 
Sbjct: 19126176 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 19126235

                                                                            
Query: 133      ggtagcttgagcctaagctcaca--------ttactcaatctcatagaaacctcaggctt 184
                |||||| | ||||||||||||||        |||||||| ||||||||||| ||| ||||
Sbjct: 19126236 ggtagccttagcctaagctcacaatctcacattactcaacctcatagaaacttcaagctt 19126295

                                         
Query: 185      actaacaaaactaagtggcctcctc 209
                |||| ||||||| ||||||||||||
Sbjct: 19126296 actaccaaaact-agtggcctcctc 19126319
to top
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0702H08
          Length = 166899

 Score =  147 bits (74), Expect = 4e-32
 Identities = 125/142 (88%)
 Strand = Plus / Plus

                                                                         
Query: 300   gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
             ||||||||||||||||| ||||||||||||||||| || || || |||||||| ||||||
Sbjct: 91842 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 91901

                                                                         
Query: 360   cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 419
             || |||||||||||||||||||||||||||||||| || |||||||||| ||| || || 
Sbjct: 91902 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacgctgtagaacgccactcgc 91961

                                   
Query: 420   gacctctcggcgcgcgctgtga 441
             | |||||| || || |||||||
Sbjct: 91962 gtcctctcagctcgtgctgtga 91983



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 120/145 (82%), Gaps = 10/145 (6%)
 Strand = Plus / Plus

                                                                         
Query: 74    atggcttgctactttcagaatcacacaagaaagcaacagaa-caaccatttatagctact 132
             ||||| || ||||||| |||||||| ||||||||||||||| || ||||  |||||| | 
Sbjct: 91593 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 91652

                                                                         
Query: 133   ggtagcttgagcctaagctcaca--------ttactcaatctcatagaaacctcaggctt 184
             |||||| | ||||||||||||||        |||||||| ||||||||||| ||| ||||
Sbjct: 91653 ggtagccttagcctaagctcacaatctcacattactcaacctcatagaaacttcaagctt 91712

                                      
Query: 185   actaacaaaactaagtggcctcctc 209
             |||| ||||||| ||||||||||||
Sbjct: 91713 actaccaaaact-agtggcctcctc 91736
to top
>ref|NM_191286.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1200

 Score =  139 bits (70), Expect = 9e-30
 Identities = 124/142 (87%)
 Strand = Plus / Minus

                                                                        
Query: 300  gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
            ||||||||||||||||| ||||||||||||||||| || || || |||||||| ||||||
Sbjct: 1145 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 1086

                                                                        
Query: 360  cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 419
            || |||||||||||||||||||||||||||||||| || || ||||||| ||| || || 
Sbjct: 1085 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacactgtagaacgctacccgc 1026

                                  
Query: 420  gacctctcggcgcgcgctgtga 441
            | |||||| || || |||||||
Sbjct: 1025 gtcctctcagctcgtgctgtga 1004
to top
>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1414_E05
          Length = 105222

 Score =  139 bits (70), Expect = 9e-30
 Identities = 124/142 (87%)
 Strand = Plus / Minus

                                                                         
Query: 300   gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
             ||||||||||||||||| ||||||||||||||||| || || || |||||||| ||||||
Sbjct: 24323 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 24264

                                                                         
Query: 360   cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 419
             || |||||||||||||||||||||||||||||||| || || ||||||| ||| || || 
Sbjct: 24263 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacactgtagaacgctacccgc 24204

                                   
Query: 420   gacctctcggcgcgcgctgtga 441
             | |||||| || || |||||||
Sbjct: 24203 gtcctctcagctcgtgctgtga 24182



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 120/145 (82%), Gaps = 10/145 (6%)
 Strand = Plus / Minus

                                                                         
Query: 74    atggcttgctactttcagaatcacacaagaaagcaacag-aacaaccatttatagctact 132
             ||||| || ||||||| |||||||| ||||||||||||| |||| ||||  |||||| | 
Sbjct: 24572 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 24513

                                                                         
Query: 133   ggtagcttgagcctaag--------ctcacattactcaatctcatagaaacctcaggctt 184
             |||||||| ||||||||        |||||||||||||| || |||||||| ||| ||||
Sbjct: 24512 ggtagctttagcctaagctcacaatctcacattactcaacctaatagaaacttcaagctt 24453

                                      
Query: 185   actaacaaaactaagtggcctcctc 209
             |||| ||||||| ||||||||||||
Sbjct: 24452 actaccaaaact-agtggcctcctc 24429
to top
>dbj|AK102373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091N05, full
            insert sequence
          Length = 1630

 Score =  139 bits (70), Expect = 9e-30
 Identities = 124/142 (87%)
 Strand = Plus / Minus

                                                                        
Query: 300  gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
            ||||||||||||||||| ||||||||||||||||| || || || |||||||| ||||||
Sbjct: 1290 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 1231

                                                                        
Query: 360  cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 419
            || |||||||||||||||||||||||||||||||| || || ||||||| ||| || || 
Sbjct: 1230 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacactgtagaacgctacccgc 1171

                                  
Query: 420  gacctctcggcgcgcgctgtga 441
            | |||||| || || |||||||
Sbjct: 1170 gtcctctcagctcgtgctgtga 1149



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 120/145 (82%), Gaps = 10/145 (6%)
 Strand = Plus / Minus

                                                                        
Query: 74   atggcttgctactttcagaatcacacaagaaagcaacag-aacaaccatttatagctact 132
            ||||| || ||||||| |||||||| ||||||||||||| |||| ||||  |||||| | 
Sbjct: 1539 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 1480

                                                                        
Query: 133  ggtagcttgagcctaag--------ctcacattactcaatctcatagaaacctcaggctt 184
            |||||||| ||||||||        |||||||||||||| || |||||||| ||| ||||
Sbjct: 1479 ggtagctttagcctaagctcacaatctcacattactcaacctaatagaaacttcaagctt 1420

                                     
Query: 185  actaacaaaactaagtggcctcctc 209
            |||| ||||||| ||||||||||||
Sbjct: 1419 actaccaaaact-agtggcctcctc 1396
to top
>dbj|AK060989.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C09, full
            insert sequence
          Length = 1626

 Score =  139 bits (70), Expect = 9e-30
 Identities = 124/142 (87%)
 Strand = Plus / Minus

                                                                        
Query: 300  gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
            ||||||||||||||||| ||||||||||||||||| || || || |||||||| ||||||
Sbjct: 1291 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 1232

                                                                        
Query: 360  cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 419
            || |||||||||||||||||||||||||||||||| || || ||||||| ||| || || 
Sbjct: 1231 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacactgtagaacgctacccgc 1172

                                  
Query: 420  gacctctcggcgcgcgctgtga 441
            | |||||| || || |||||||
Sbjct: 1171 gtcctctcagctcgtgctgtga 1150



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 120/145 (82%), Gaps = 10/145 (6%)
 Strand = Plus / Minus

                                                                        
Query: 74   atggcttgctactttcagaatcacacaagaaagcaacag-aacaaccatttatagctact 132
            ||||| || ||||||| |||||||| ||||||||||||| |||| ||||  |||||| | 
Sbjct: 1540 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 1481

                                                                        
Query: 133  ggtagcttgagcctaag--------ctcacattactcaatctcatagaaacctcaggctt 184
            |||||||| ||||||||        |||||||||||||| || |||||||| ||| ||||
Sbjct: 1480 ggtagctttagcctaagctcacaatctcacattactcaacctaatagaaacttcaagctt 1421

                                     
Query: 185  actaacaaaactaagtggcctcctc 209
            |||| ||||||| ||||||||||||
Sbjct: 1420 actaccaaaact-agtggcctcctc 1397
to top
>gb|AY596543.1| Saccharum officinarum clone SCCCCL4007B07, complete sequence
          Length = 1774

 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                        
Query: 300  gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
            ||||| |||||||| ||  | ||||||||||| || |||||||||||||||||||| |||
Sbjct: 1425 gcctttaacccagccgctgcgttcaagccccatacccggacgtcgtcgatcaccggtcca 1366

                                                             
Query: 360  cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtaga 408
            ||||| |||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 1365 cacagtgagctgtggtcgtcactcctcgtgttgtagtacacgctgtaga 1317



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                         
Query: 2    tgaagagatgaacttggaacaattcttacatctcacattacaagc 46
            ||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct: 1750 tgaagagatgaacttagaacaattctgacatctcatattacaagc 1706
to top
>gb|AY111554.1| Zea mays CL1493_2 mRNA sequence
          Length = 797

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 113/134 (84%)
 Strand = Plus / Minus

                                                                       
Query: 300 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
           |||||||||||||| ||  | |||||  |||| || ||||| ||||| |||||||| |||
Sbjct: 345 gccttcaacccagccgcggcgttcaatgcccatacccggacatcgtcaatcaccgggcca 286

                                                                       
Query: 360 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 419
           |||||||||||||||||||| || |||||||||||||| ||||| |||| ||| || |||
Sbjct: 285 cacagcgagctgtggtcgtcactcctcgtgttgtagtacacgctatagaacgccacacgt 226

                         
Query: 420 gacctctcggcgcg 433
           |  ||||| |||||
Sbjct: 225 gttctctcagcgcg 212
to top
>gb|AY108251.1| Zea mays PCO077043 mRNA sequence
          Length = 1664

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 112/134 (83%)
 Strand = Plus / Minus

                                                                        
Query: 300  gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 359
            |||||||||||||| ||  | |||||  |||| || ||||| ||||| |||||||| |||
Sbjct: 1377 gccttcaacccagccgcggcgttcaatgcccatacccggacatcgtcaatcaccgggcca 1318

                                                                        
Query: 360  cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 419
            |||||||||||||||||||| || ||||||||||| || ||||| |||| ||| || |||
Sbjct: 1317 cacagcgagctgtggtcgtcactcctcgtgttgtaatacacgctatagaacgccacacgt 1258

                          
Query: 420  gacctctcggcgcg 433
            |  ||||| |||||
Sbjct: 1257 gttctctcagcgcg 1244
to top
>gb|AY106885.1| Zea mays PCO120977 mRNA sequence
          Length = 441

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                       
Query: 297 ctcgccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggc 356
           ||||||||||||||||| ||    ||||||||||| || |||||||||||||||||||||
Sbjct: 357 ctcgccttcaacccagccgcggtgttcaagccccatacgcggacgtcgtcgatcaccggc 416

                             
Query: 357 ccacacagcgagctgtgg 374
           || |||||||||||||||
Sbjct: 417 ccgcacagcgagctgtgg 434



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                               
Query: 7  agatgaacttggaacaattcttacatctcacattaca 43
          ||||||||||| |||| |||| |||||||| ||||||
Sbjct: 23 agatgaacttgtaacagttctaacatctcatattaca 59
to top
>ref|XM_464560.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1499

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 338  gacgtcgtcgatcaccggcccacacagcgagctgtggtcgtcgcttctcgtgttgtag 395
            ||||||||||||||||||||| || ||||||||   ||||||||| || ||| |||||
Sbjct: 1243 gacgtcgtcgatcaccggcccgcagagcgagctcatgtcgtcgctcctggtgctgtag 1186
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                         
Query: 338     gacgtcgtcgatcaccggcccacacagcgagctgtggtcgtcgcttctcgtgttgtag 395
               ||||||||||||||||||||| || ||||||||   ||||||||| || ||| |||||
Sbjct: 5912869 gacgtcgtcgatcaccggcccgcagagcgagctcatgtcgtcgctcctggtgctgtag 5912926
to top
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0056C19
          Length = 147739

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 338   gacgtcgtcgatcaccggcccacacagcgagctgtggtcgtcgcttctcgtgttgtag 395
             ||||||||||||||||||||| || ||||||||   ||||||||| || ||| |||||
Sbjct: 91090 gacgtcgtcgatcaccggcccgcagagcgagctcatgtcgtcgctcctggtgctgtag 91147
to top
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0544H11
          Length = 178376

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                        
Query: 338    gacgtcgtcgatcaccggcccacacagcgagctgtggtcgtcgcttctcgtgttgtag 395
              ||||||||||||||||||||| || ||||||||   ||||||||| || ||| |||||
Sbjct: 142671 gacgtcgtcgatcaccggcccgcagagcgagctcatgtcgtcgctcctggtgctgtag 142728
to top
>dbj|AK106819.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D06, full
            insert sequence
          Length = 1498

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 338  gacgtcgtcgatcaccggcccacacagcgagctgtggtcgtcgcttctcgtgttgtag 395
            ||||||||||||||||||||| || ||||||||   ||||||||| || ||| |||||
Sbjct: 1242 gacgtcgtcgatcaccggcccgcagagcgagctcatgtcgtcgctcctggtgctgtag 1185
to top
>gb|AC145905.4| Pan troglodytes BAC clone RP43-9I21 from 7, complete sequence
          Length = 187893

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 271   taaccatggcaataagaatccc 292
             ||||||||||||||||||||||
Sbjct: 54182 taaccatggcaataagaatccc 54161
to top
>gb|AC146159.2| Pan troglodytes BAC clone RP43-36O19 from 7, complete sequence
          Length = 163991

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 271 taaccatggcaataagaatccc 292
           ||||||||||||||||||||||
Sbjct: 335 taaccatggcaataagaatccc 314
to top
>gb|AC018664.11| Homo sapiens chromosome 7 clone RP11-109E9, complete sequence
          Length = 114848

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 271   taaccatggcaataagaatccc 292
             ||||||||||||||||||||||
Sbjct: 92864 taaccatggcaataagaatccc 92843
to top
>gb|AC008080.1|AC008080 Homo sapiens clone RP11-89N17 from 7p14-15, complete sequence
          Length = 178635

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 271  taaccatggcaataagaatccc 292
            ||||||||||||||||||||||
Sbjct: 4136 taaccatggcaataagaatccc 4115
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 338     gacgtcgtcgatcaccggccc 358
               |||||||||||||||||||||
Sbjct: 5508680 gacgtcgtcgatcaccggccc 5508660
to top
>gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome 10, complete sequence
          Length = 202804

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tcacatatgtagtatatatt 245
             ||||||||||||||||||||
Sbjct: 72137 tcacatatgtagtatatatt 72156
to top
>gb|AC153597.13| Mus musculus 6 BAC RP23-18K9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 197694

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 71     atcatggcttgctactttcagaatcaca 98
              |||||| |||||| ||||||||||||||
Sbjct: 128212 atcatgacttgcttctttcagaatcaca 128239
to top
>emb|Z71183.2|HSN28H9 Human DNA sequence from clone LL22NC03-28H9 on chromosome 22 Contains
             the 3' end of the FBXO7 gene for F-box protein 7 and the
             3' end of the SYN3 gene for Synapsin III, complete
             sequence
          Length = 28900

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 230   atatgtagtatatattcagaacag 253
             |||||||||| |||||||||||||
Sbjct: 10709 atatgtagtaaatattcagaacag 10732
to top
>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence
          Length = 238662

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     caagaaagcaacagaacaac 118
              ||||||||||||||||||||
Sbjct: 175152 caagaaagcaacagaacaac 175171
to top
>gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosome 18, complete sequence
          Length = 195721

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     caagaaagcaacagaacaac 118
              ||||||||||||||||||||
Sbjct: 111829 caagaaagcaacagaacaac 111848
to top
>gb|AE012042.1| Xanthomonas axonopodis pv. citri str. 306,  section 420 of 469 of the
            complete genome
          Length = 13441

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 409  gcgcaacgcgtgacctctcggcgc 432
            ||||||||||||||||||| ||||
Sbjct: 5953 gcgcaacgcgtgacctctccgcgc 5976
to top
>gb|AC080088.5| Homo sapiens BAC clone RP11-716B14 from 4, complete sequence
          Length = 71463

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tcacacaagaaagcaacaga 113
             ||||||||||||||||||||
Sbjct: 30306 tcacacaagaaagcaacaga 30325
to top
>gb|AC078953.20| Homo sapiens 3 BAC RP11-370M22 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 159667

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  ttcaacccagcagccccatt 322
            ||||||||||||||||||||
Sbjct: 9527 ttcaacccagcagccccatt 9508
to top
>ref|XM_690191.1| PREDICTED: Danio rerio similar to phosphodiesterase 4D interacting
            protein isoform 5 (LOC566905), mRNA
          Length = 8442

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  aaagcaacagaacaaccatt 122
            ||||||||||||||||||||
Sbjct: 2853 aaagcaacagaacaaccatt 2872
to top
>dbj|AK047278.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930044N05 product:hypothetical
            protein, full insert sequence
          Length = 1224

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  tcacatatgtagtatatatt 245
            ||||||||||||||||||||
Sbjct: 1180 tcacatatgtagtatatatt 1161
to top
>gb|AC146083.5| Pan troglodytes BAC clone RP43-56I21 from chromosome 7, complete sequence
          Length = 177922

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    ttcaacccagcagccccatt 322
              ||||||||||||||||||||
Sbjct: 136825 ttcaacccagcagccccatt 136844
to top
>gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7, complete sequence
          Length = 201762

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    ttcaacccagcagccccatt 322
              ||||||||||||||||||||
Sbjct: 179652 ttcaacccagcagccccatt 179633
to top
>dbj|AB020754.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYN8
          Length = 54528

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    ctttcagaatcacacaagaa 104
             ||||||||||||||||||||
Sbjct: 19250 ctttcagaatcacacaagaa 19231
to top
>emb|BX255903.3| Zebrafish DNA sequence from clone CH211-242B18 in linkage group 20,
             complete sequence
          Length = 117796

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   aaagcaacagaacaaccatt 122
             ||||||||||||||||||||
Sbjct: 40949 aaagcaacagaacaaccatt 40930
to top
>emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 in linkage group 20,
              complete sequence
          Length = 146407

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 388    tgttgtagtagacgctgtag 407
              ||||||||||||||||||||
Sbjct: 120428 tgttgtagtagacgctgtag 120447
to top
>emb|AL929033.7| Mouse DNA sequence from clone RP23-427N17 on chromosome 2, complete
            sequence
          Length = 164571

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cttggaacaattcttacatc 33
            ||||||||||||||||||||
Sbjct: 4435 cttggaacaattcttacatc 4454
to top
>emb|AL845277.11| Mouse DNA sequence from clone RP23-35J6 on chromosome 2, complete
              sequence
          Length = 225087

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    acaaccatttatagctactg 133
              ||||||||||||||||||||
Sbjct: 139454 acaaccatttatagctactg 139435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,060,624
Number of Sequences: 3902068
Number of extensions: 3060624
Number of successful extensions: 57273
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57117
Number of HSP's gapped (non-prelim): 148
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top