| Clone Name | rbags27n07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 2e-24 Identities = 145/174 (83%) Strand = Plus / Minus Query: 140 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagntca 199 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||| ||| Sbjct: 1303807 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 1303748 Query: 200 gattgattcatcccgacagctttctcaagcgattcatngncctcgaaatcaacatggcag 259 ||||||||||| || ||||| ||||||||||| || | | |||| ||||||||||| || Sbjct: 1303747 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 1303688 Query: 260 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 313 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 1303687 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 1303634
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 2e-24 Identities = 145/174 (83%) Strand = Plus / Minus Query: 140 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagntca 199 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||| ||| Sbjct: 1303805 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 1303746 Query: 200 gattgattcatcccgacagctttctcaagcgattcatngncctcgaaatcaacatggcag 259 ||||||||||| || ||||| ||||||||||| || | | |||| ||||||||||| || Sbjct: 1303745 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 1303686 Query: 260 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 313 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 1303685 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 1303632
>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12, complete sequence Length = 146241 Score = 121 bits (61), Expect = 2e-24 Identities = 145/174 (83%) Strand = Plus / Minus Query: 140 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagntca 199 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||| ||| Sbjct: 108709 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 108650 Query: 200 gattgattcatcccgacagctttctcaagcgattcatngncctcgaaatcaacatggcag 259 ||||||||||| || ||||| ||||||||||| || | | |||| ||||||||||| || Sbjct: 108649 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 108590 Query: 260 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 313 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 108589 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 108536
>dbj|AK066740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082B19, full insert sequence Length = 1092 Score = 121 bits (61), Expect = 2e-24 Identities = 145/174 (83%) Strand = Plus / Minus Query: 140 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagntca 199 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||| ||| Sbjct: 900 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 841 Query: 200 gattgattcatcccgacagctttctcaagcgattcatngncctcgaaatcaacatggcag 259 ||||||||||| || ||||| ||||||||||| || | | |||| ||||||||||| || Sbjct: 840 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 781 Query: 260 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 313 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 780 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 727
>ref|XM_468587.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 759 Score = 113 bits (57), Expect = 4e-22 Identities = 108/126 (85%) Strand = Plus / Minus Query: 188 ccgcgcagntcagattgattcatcccgacagctttctcaagcgattcatngncctcgaaa 247 |||||||| |||||||||||||| || ||||| ||||||||||| || | | |||| ||| Sbjct: 716 ccgcgcagttcagattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaa 657 Query: 248 tcaacatggcagaagccacgagaatctcctgttctcttgtcgatggcaaatcttattgat 307 |||||||| || || ||||||||||| ||||||||||||| ||| ||||| ||||| ||| Sbjct: 656 tcaacatgacaaaaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgat 597 Query: 308 gcaatc 313 | |||| Sbjct: 596 gaaatc 591
>gb|BT018692.1| Zea mays clone EL01N0512E07.d mRNA sequence Length = 1700 Score = 50.1 bits (25), Expect = 0.005 Identities = 109/137 (79%) Strand = Plus / Minus Query: 245 aaatcaacatggcagaagccacgagaatctcctgttctcttgtcgatggcaaatcttatt 304 ||||||||||| || |||||| | ||| | || ||||| ||||| ||| | || |||| | Sbjct: 227 aaatcaacatgacaaaagccatgggaacccccagttcttttgtcaatgacgaaccttact 168 Query: 305 gatgcaatccttgacgatttgaagaaatctctcaaatccttctcactgatgttccatgag 364 |||||||| | || || |||||||||||| ||| || || ||| ||| ||||||| || Sbjct: 167 aatgcaatcttcgatgagctgaagaaatctcgcaagtcattttcaatgacgttccataag 108 Query: 365 agattgccgacataagc 381 ||||| || |||||||| Sbjct: 107 agattaccaacataagc 91
>ref|XM_363563.1| Magnaporthe grisea 70-15 hypothetical protein (MG01489.4) partial mRNA Length = 2940 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ctcgaaatcaacatggcaga 260 |||||||||||||||||||| Sbjct: 2164 ctcgaaatcaacatggcaga 2183
>emb|AL138744.41| Human DNA sequence from clone RP13-257M1 on chromosome Xp11.23-11.4 Contains part of the UTX gene for ubiquitously transcribed tetratricopeptide repeat gene X chromosome and a CpG island, complete sequence Length = 143968 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 atttgaagaaatctctcaaa 340 |||||||||||||||||||| Sbjct: 31431 atttgaagaaatctctcaaa 31412
>emb|AL691456.7| Mouse DNA sequence from clone RP23-468K2 on chromosome 4 Contains part of the Astn2 gene for astrotactin 2 and the Trim32 gene for tripartite motif protein 32, complete sequence Length = 158960 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tggtctatagaaacataatg 62 |||||||||||||||||||| Sbjct: 67575 tggtctatagaaacataatg 67556
>gb|AY110713.1| Zea mays CL7875_1 mRNA sequence Length = 655 Score = 40.1 bits (20), Expect = 5.1 Identities = 51/63 (80%) Strand = Plus / Plus Query: 251 acatggcagaagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgca 310 ||||||||||||||||| ||| ||||| ||||||| |||||| |||| |||||| Sbjct: 449 acatggcagaagccacgggaannnnnggttcttttgtcgacggcaaaccttaccgatgca 508 Query: 311 atc 313 ||| Sbjct: 509 atc 511 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,752,565 Number of Sequences: 3902068 Number of extensions: 2752565 Number of successful extensions: 43771 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43727 Number of HSP's gapped (non-prelim): 44 length of query: 381 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 359 effective length of database: 17,147,199,772 effective search space: 6155844718148 effective search space used: 6155844718148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)