ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags27n07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 121 2e-24
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
3gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
4dbj|AK066740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
5ref|XM_468587.1| Oryza sativa (japonica cultivar-group), predic... 113 4e-22
6gb|BT018692.1| Zea mays clone EL01N0512E07.d mRNA sequence 50 0.005
7ref|XM_363563.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.1
8emb|AL138744.41| Human DNA sequence from clone RP13-257M1 on chr... 40 5.1
9emb|AL691456.7| Mouse DNA sequence from clone RP23-468K2 on chro... 40 5.1
10gb|AY110713.1| Zea mays CL7875_1 mRNA sequence 40 5.1

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/174 (83%)
 Strand = Plus / Minus

                                                                           
Query: 140     agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagntca 199
               ||||||||| |||||||  ||| |||||| | |||||| |  ||||  |||||||| |||
Sbjct: 1303807 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 1303748

                                                                           
Query: 200     gattgattcatcccgacagctttctcaagcgattcatngncctcgaaatcaacatggcag 259
               ||||||||||| || ||||| ||||||||||| || | | |||| ||||||||||| || 
Sbjct: 1303747 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 1303688

                                                                     
Query: 260     aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 313
               || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| ||||
Sbjct: 1303687 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 1303634



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/174 (83%)
 Strand = Plus / Minus

                                                                           
Query: 140     agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagntca 199
               ||||||||| |||||||  ||| |||||| | |||||| |  ||||  |||||||| |||
Sbjct: 1303805 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 1303746

                                                                           
Query: 200     gattgattcatcccgacagctttctcaagcgattcatngncctcgaaatcaacatggcag 259
               ||||||||||| || ||||| ||||||||||| || | | |||| ||||||||||| || 
Sbjct: 1303745 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 1303686

                                                                     
Query: 260     aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 313
               || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| ||||
Sbjct: 1303685 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 1303632



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>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12,
              complete sequence
          Length = 146241

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/174 (83%)
 Strand = Plus / Minus

                                                                          
Query: 140    agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagntca 199
              ||||||||| |||||||  ||| |||||| | |||||| |  ||||  |||||||| |||
Sbjct: 108709 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 108650

                                                                          
Query: 200    gattgattcatcccgacagctttctcaagcgattcatngncctcgaaatcaacatggcag 259
              ||||||||||| || ||||| ||||||||||| || | | |||| ||||||||||| || 
Sbjct: 108649 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 108590

                                                                    
Query: 260    aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 313
              || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| ||||
Sbjct: 108589 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 108536



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>dbj|AK066740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082B19, full
           insert sequence
          Length = 1092

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/174 (83%)
 Strand = Plus / Minus

                                                                       
Query: 140 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagntca 199
           ||||||||| |||||||  ||| |||||| | |||||| |  ||||  |||||||| |||
Sbjct: 900 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 841

                                                                       
Query: 200 gattgattcatcccgacagctttctcaagcgattcatngncctcgaaatcaacatggcag 259
           ||||||||||| || ||||| ||||||||||| || | | |||| ||||||||||| || 
Sbjct: 840 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 781

                                                                 
Query: 260 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 313
           || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| ||||
Sbjct: 780 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 727



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>ref|XM_468587.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 759

 Score =  113 bits (57), Expect = 4e-22
 Identities = 108/126 (85%)
 Strand = Plus / Minus

                                                                       
Query: 188 ccgcgcagntcagattgattcatcccgacagctttctcaagcgattcatngncctcgaaa 247
           |||||||| |||||||||||||| || ||||| ||||||||||| || | | |||| |||
Sbjct: 716 ccgcgcagttcagattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaa 657

                                                                       
Query: 248 tcaacatggcagaagccacgagaatctcctgttctcttgtcgatggcaaatcttattgat 307
           |||||||| || || ||||||||||| ||||||||||||| ||| ||||| ||||| |||
Sbjct: 656 tcaacatgacaaaaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgat 597

                 
Query: 308 gcaatc 313
           | ||||
Sbjct: 596 gaaatc 591



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>gb|BT018692.1| Zea mays clone EL01N0512E07.d mRNA sequence
          Length = 1700

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 109/137 (79%)
 Strand = Plus / Minus

                                                                       
Query: 245 aaatcaacatggcagaagccacgagaatctcctgttctcttgtcgatggcaaatcttatt 304
           ||||||||||| || |||||| | ||| | || ||||| ||||| ||| | || |||| |
Sbjct: 227 aaatcaacatgacaaaagccatgggaacccccagttcttttgtcaatgacgaaccttact 168

                                                                       
Query: 305 gatgcaatccttgacgatttgaagaaatctctcaaatccttctcactgatgttccatgag 364
            |||||||| | || ||  |||||||||||| ||| || || ||| ||| ||||||| ||
Sbjct: 167 aatgcaatcttcgatgagctgaagaaatctcgcaagtcattttcaatgacgttccataag 108

                            
Query: 365 agattgccgacataagc 381
           ||||| || ||||||||
Sbjct: 107 agattaccaacataagc 91



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>ref|XM_363563.1| Magnaporthe grisea 70-15 hypothetical protein (MG01489.4) partial
            mRNA
          Length = 2940

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  ctcgaaatcaacatggcaga 260
            ||||||||||||||||||||
Sbjct: 2164 ctcgaaatcaacatggcaga 2183



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>emb|AL138744.41| Human DNA sequence from clone RP13-257M1 on chromosome Xp11.23-11.4
             Contains part of the UTX gene for ubiquitously transcribed
             tetratricopeptide repeat gene X chromosome and a CpG
             island, complete sequence
          Length = 143968

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   atttgaagaaatctctcaaa 340
             ||||||||||||||||||||
Sbjct: 31431 atttgaagaaatctctcaaa 31412



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>emb|AL691456.7| Mouse DNA sequence from clone RP23-468K2 on chromosome 4 Contains part
             of the Astn2 gene for astrotactin 2 and the Trim32 gene
             for tripartite motif protein 32, complete sequence
          Length = 158960

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    tggtctatagaaacataatg 62
             ||||||||||||||||||||
Sbjct: 67575 tggtctatagaaacataatg 67556



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>gb|AY110713.1| Zea mays CL7875_1 mRNA sequence
          Length = 655

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 51/63 (80%)
 Strand = Plus / Plus

                                                                       
Query: 251 acatggcagaagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgca 310
           ||||||||||||||||| |||      ||||| ||||||| |||||| ||||  ||||||
Sbjct: 449 acatggcagaagccacgggaannnnnggttcttttgtcgacggcaaaccttaccgatgca 508

              
Query: 311 atc 313
           |||
Sbjct: 509 atc 511


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,752,565
Number of Sequences: 3902068
Number of extensions: 2752565
Number of successful extensions: 43771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43727
Number of HSP's gapped (non-prelim): 44
length of query: 381
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 359
effective length of database: 17,147,199,772
effective search space: 6155844718148
effective search space used: 6155844718148
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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