ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags28c04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0002A19, complete sequence Length = 139052 Score = 77.8 bits (39), Expect = 3e-11 Identities = 102/123 (82%) Strand = Plus / Plus Query: 272 gacctcgacgtttaggtttggcatggttgccgcgagggacctgcagccacccagggtgat 331 |||||||| ||| ||||||| |||| |||| || || ||| |||| || |||||||||| Sbjct: 46818 gacctcgatgttgaggtttgccatgcttgctgcaagagacttgcaaccccccagggtgac 46877 Query: 332 gtcgcacgacgacatccaaagagagcgcatcgcctcgtacctgtgcatgcctgcaagaag 391 | |||||||||| ||| || |||||||| ||||||||| ||||||||||||||||| Sbjct: 46878 attacacgacgacaaccagagtgagcgcattgcctcgtactgatgcatgcctgcaagaag 46937 Query: 392 cgc 394 ||| Sbjct: 46938 cgc 46940 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 168 gagacgaatccaggggcatcacccctcggcccggcgagtgtcctgtagacatacagcttc 227 |||| |||| |||| |||||||||||||| || || | ||||||||| | ||||| |||| Sbjct: 46699 gagatgaattcaggcgcatcacccctcggtccagcaactgtcctgtaaatatacaacttc 46758 Query: 228 tccaccttctttgcatc 244 | ||||||||||||||| Sbjct: 46759 ttcaccttctttgcatc 46775
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 77.8 bits (39), Expect = 3e-11 Identities = 102/123 (82%) Strand = Plus / Plus Query: 272 gacctcgacgtttaggtttggcatggttgccgcgagggacctgcagccacccagggtgat 331 |||||||| ||| ||||||| |||| |||| || || ||| |||| || |||||||||| Sbjct: 17886224 gacctcgatgttgaggtttgccatgcttgctgcaagagacttgcaaccccccagggtgac 17886283 Query: 332 gtcgcacgacgacatccaaagagagcgcatcgcctcgtacctgtgcatgcctgcaagaag 391 | |||||||||| ||| || |||||||| ||||||||| ||||||||||||||||| Sbjct: 17886284 attacacgacgacaaccagagtgagcgcattgcctcgtactgatgcatgcctgcaagaag 17886343 Query: 392 cgc 394 ||| Sbjct: 17886344 cgc 17886346 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 168 gagacgaatccaggggcatcacccctcggcccggcgagtgtcctgtagacatacagcttc 227 |||| |||| |||| |||||||||||||| || || | ||||||||| | ||||| |||| Sbjct: 17886105 gagatgaattcaggcgcatcacccctcggtccagcaactgtcctgtaaatatacaacttc 17886164 Query: 228 tccaccttctttgcatc 244 | ||||||||||||||| Sbjct: 17886165 ttcaccttctttgcatc 17886181
>dbj|AK105629.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-D04, full insert sequence Length = 2170 Score = 77.8 bits (39), Expect = 3e-11 Identities = 102/123 (82%) Strand = Plus / Minus Query: 272 gacctcgacgtttaggtttggcatggttgccgcgagggacctgcagccacccagggtgat 331 |||||||| ||| ||||||| |||| |||| || || ||| |||| || |||||||||| Sbjct: 1829 gacctcgatgttgaggtttgccatgcttgctgcaagagacttgcaaccccccagggtgac 1770 Query: 332 gtcgcacgacgacatccaaagagagcgcatcgcctcgtacctgtgcatgcctgcaagaag 391 | |||||||||| ||| || |||||||| ||||||||| ||||||||||||||||| Sbjct: 1769 attacacgacgacaaccagagtgagcgcattgcctcgtactgatgcatgcctgcaagaag 1710 Query: 392 cgc 394 ||| Sbjct: 1709 cgc 1707 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 168 gagacgaatccaggggcatcacccctcggcccggcgagtgtcctgtagacatacagcttc 227 |||| |||| |||| |||||||||||||| || || | ||||||||| | ||||| |||| Sbjct: 1948 gagatgaattcaggcgcatcacccctcggtccagcaactgtcctgtaaatatacaacttc 1889 Query: 228 tccaccttctttgcatc 244 | ||||||||||||||| Sbjct: 1888 ttcaccttctttgcatc 1872
>dbj|AK072358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056H23, full insert sequence Length = 2987 Score = 77.8 bits (39), Expect = 3e-11 Identities = 102/123 (82%) Strand = Plus / Minus Query: 272 gacctcgacgtttaggtttggcatggttgccgcgagggacctgcagccacccagggtgat 331 |||||||| ||| ||||||| |||| |||| || || ||| |||| || |||||||||| Sbjct: 1831 gacctcgatgttgaggtttgccatgcttgctgcaagagacttgcaaccccccagggtgac 1772 Query: 332 gtcgcacgacgacatccaaagagagcgcatcgcctcgtacctgtgcatgcctgcaagaag 391 | |||||||||| ||| || |||||||| ||||||||| ||||||||||||||||| Sbjct: 1771 attacacgacgacaaccagagtgagcgcattgcctcgtactgatgcatgcctgcaagaag 1712 Query: 392 cgc 394 ||| Sbjct: 1711 cgc 1709 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 168 gagacgaatccaggggcatcacccctcggcccggcgagtgtcctgtagacatacagcttc 227 |||| |||| |||| |||||||||||||| || || | ||||||||| | ||||| |||| Sbjct: 1950 gagatgaattcaggcgcatcacccctcggtccagcaactgtcctgtaaatatacaacttc 1891 Query: 228 tccaccttctttgcatc 244 | ||||||||||||||| Sbjct: 1890 ttcaccttctttgcatc 1874
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 77.8 bits (39), Expect = 3e-11 Identities = 102/123 (82%) Strand = Plus / Plus Query: 272 gacctcgacgtttaggtttggcatggttgccgcgagggacctgcagccacccagggtgat 331 |||||||| ||| ||||||| |||| |||| || || ||| |||| || |||||||||| Sbjct: 17979943 gacctcgatgttgaggtttgccatgcttgctgcaagagacttgcaaccccccagggtgac 17980002 Query: 332 gtcgcacgacgacatccaaagagagcgcatcgcctcgtacctgtgcatgcctgcaagaag 391 | |||||||||| ||| || |||||||| ||||||||| ||||||||||||||||| Sbjct: 17980003 attacacgacgacaaccagagtgagcgcattgcctcgtactgatgcatgcctgcaagaag 17980062 Query: 392 cgc 394 ||| Sbjct: 17980063 cgc 17980065 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 168 gagacgaatccaggggcatcacccctcggcccggcgagtgtcctgtagacatacagcttc 227 |||| |||| |||| |||||||||||||| || || | ||||||||| | ||||| |||| Sbjct: 17979824 gagatgaattcaggcgcatcacccctcggtccagcaactgtcctgtaaatatacaacttc 17979883 Query: 228 tccaccttctttgcatc 244 | ||||||||||||||| Sbjct: 17979884 ttcaccttctttgcatc 17979900
>emb|AL118506.27|HSJ591C20 Human DNA sequence from clone RP4-591C20 on chromosome 20 Contains the C20orf135 gene for chromosome 20 open reading frame 135, the TPD52L2 gene for tumor protein D52-like protein 2, the DNAJC5 gene for member 5 of DnaJ (Hsp40) homolog subfamily C, the URKL1 gene for uridine kinase-like 1, the gene for a novel protein (KIAA1196), the C20orf136 gene for chromosome 20 open reading frame 136, the 5' end of the C20orf14 gene for chromosome 20 open reading frame 14 and twelve CpG islands, complete sequence Length = 139505 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 306 agggacctgcagccacccaggg 327 |||||||||||||||||||||| Sbjct: 92561 agggacctgcagccacccaggg 92582
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 tacagcttctccaccttcttt 239 ||||||||||||||||||||| Sbjct: 2460906 tacagcttctccaccttcttt 2460926 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,630,845 Number of Sequences: 3902068 Number of extensions: 2630845 Number of successful extensions: 39513 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39471 Number of HSP's gapped (non-prelim): 42 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
